Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0061340 | OGI:99058190 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg462:265945-267988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaagacgagcgaaattgtcaaatggttcttcctatttctgaagacagagagagcgatgcttatgcggatcgagttccttgtggagctcattgccgttctgttcctgctgatgtcgttcttggacatgttccgtcgccggtcacgcaactcggccatcaagaacagcttactgatcctcgacgccgtatgcgattccacgctgatttacacgattgggctgatgcagaacgcgccgttcaagaatgacctgtttccagtgtgggcgctcgtgctggttaacctccggagcagcgtctgcttcatctcggcatacggcatccctgaccaagagaaccgccgcatttctgaggcagcaagggtgatggcacttcttggggttgccttcctgaacagcacattcaacagcgagctaaagcatcctatctgggcactctgggcaatgctgcagttcagaagcttctacctcgtatgggcttacattcgtgctacagagtccttcttgcatggatggagctcaccacttctggcagcatatatgggcacctccgatgttgttgctgcgaatggggatccgatcacaatgcaggggtacaggtacttcgtctctggagatcagaagcagaaaataagtgtgaagccacctatgtacaagttcagcctaactgcgccggaacgcaagaagagaatgctcgtcacgcttgacaaggcttggctgcctagtgagcagcagaattcagccggcaacgacaacgatccagaaaacgaaggtgtggtcagttcgactgacatccggacaccacagatgaaagacatgtgcctatctttcgcactgtaccggctactccgttgcaggttcgacgacttgagcctgccacgcgacagcgttgtccacaccagaagattggtcagtgaaatcatcggcagaagcagcacggacctggctgcgagaataagcgaatacagcgagaggagcttcaggattgtgaggtccgagctagcattcctcaacgactacttctacacgaggtaccccgtcctcttctggcgtggcttcccactcatcgctttcatcctttggcttggaatcgatctccacagaatctacaggcccaagagggagagaccgcccacgtcatacacggcaccaacgttgatatcatcatcacatgggtgttcatggccattatggtgttgaaggagctttggaagatgctagctacatgctttcggactggaccaaggtgatggttctgtgcgaatacactgctgggagcctacaacgtttcccgcgatggttttgcaagctctttctctggttcttgtgcaccccaagatccacaatcgtccaccgttgcacaagaagatcgatcagtacgagttccttcagtcgtttatttacagcccttggatgtggaacactctctactatgtaaccctgggcttggtccggaagcgaagtgatggctcccggaagacgtaaaacatgccattttaaggtcactcagctcgctgaactcgagaaagattttctggaggataagataccatctttggagacgaatttcccaagtttcatgtcaatgtttaagttatttccaacatgctcccacgccatcctcgtgtggcatatagcaacaagcctgtgtgagattgagattgagctggctcagcactacaacacatgcctgactaattcagaggtgctgcgtgcagtcaaggccgccatgaaatgttgctcctcgcagccctacgtcgtgaaggaagagaggattgagggcgccttgcgagccaactacgtagtcgcaagctgtctatcaagatactgcgcctatctgctcatttcagagcccgatttgctgccagacacctacttgacctctacggagatattcgcgagcgccgtggctgaggcttcagatgttctcaagggctctgacaacatgcagaaaactgatgcgtcatggggatgtcgtaaacgacgagaacacgaacagacgccaccccaatcagatacttcagagaagtgcacaacttgctaa
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| CDS seq | atggcgaagacgagcgaaattgtcaaatggttcttcctatttctgaagacagagagagcgatgcttatgcggatcgagttccttgtggagctcattgccgttctgttcctgctgatgtcgttcttggacatgttccgtcgccggtcacgcaactcggccatcaagaacagcttactgatcctcgacgccgtatgcgattccacgctgatttacacgattgggctgatgcagaacgcgccgttcaagaatgacctgtttccagtgtgggcgctcgtgctggttaacctccggagcagcgtctgcttcatctcggcatacggcatccctgaccaagagaaccgccgcatttctgaggcagcaagggtgatggcacttcttggggttgccttcctgaacagcacattcaacagcgagctaaagcatcctatctgggcactctgggcaatgctgcagttcagaagcttctacctcgtatgggcttacattcgtgctacagagtccttcttgcatggatggagctcaccacttctggcagcatatatgggcacctccgatgttgttgctgcgaatggggatccgatcacaatgcaggggtacaggtacttcgtctctggagatcagaagcagaaaataagtgtgaagccacctatgtacaagttcagcctaactgcgccggaacgcaagaagagaatgctcgtcacgcttgacaaggcttggctgcctagtgagcagcagaattcagccggcaacgacaacgatccagaaaacgaaggtgtggtcagttcgactgacatccggacaccacagatgaaagacatgtgcctatctttcgcactgtaccggctactccgttgcaggttcgacgacttgagcctgccacgcgacagcgttgtccacaccagaagattggtcagtgaaatcatcggcagaagcagcacggacctggctgcgagaataagcgaatacagcgagaggagcttcaggattgtgaggtccgagctagcattcctcaacgactacttctacacgaggtaccccgtcctcttctggcgtggcttcccactcatcgctttcatcctttggcttggaatcgatctccacagaatctacaggcccaagagggagagaccgcccacctacatgctttcggactggaccaaggtgatggttctgtgcgaatacactgctgggagcctacaacgtttcccgcgatggttttgcaagctctttctctggttcttgtgcaccccaagatccacaatcgtccaccgttgcacaagaagatcgatcatgatggctcccggaagacgtaaaacatgccattttaaggtcactcagctcgctgaactcgagaaagattttctggaggataagataccatctttggagacgaatttcccaagtttcatgtcaatgtttaagttatttccaacatgctcccacgccatcctcgtgtggcatatagcaacaagcctgtgtgagattgagattgagctggctcagcactacaacacatgcctgactaattcagaggtgctgcgtgcagtcaaggccgccatgaaatgttgctcctcgcagccctacgtcgtgaaggaagagaggattgagggcgccttgcgagccaactacgtagtcgcaagctgtctatcaagatactgcgcctatctgctcatttcagagcccgatttgctgccagacacctacttgacctctacggagatattcgcgagcgccgtggctgaggcttcagatgttctcaagggctctgacaacatgcagaaaactgatgcgtcatggggatgtcgtaaacgacgagaacacgaacagacgccaccccaatcagatacttcagagaagtgcacaacttgctaa
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| Protein seq | MAKTSEIVKWFFLFLKTERAMLMRIEFLVELIAVLFLLMSFLDMFRRRSRNSAIKNSLLILDAVCDSTLIYTIGLMQNAPFKNDLFPVWALVLVNLRSSVCFISAYGIPDQENRRISEAARVMALLGVAFLNSTFNSELKHPIWALWAMLQFRSFYLVWAYIRATESFLHGWSSPLLAAYMGTSDVVAANGDPITMQGYRYFVSGDQKQKISVKPPMYKFSLTAPERKKRMLVTLDKAWLPSEQQNSAGNDNDPENEGVVSSTDIRTPQMKDMCLSFALYRLLRCRFDDLSLPRDSVVHTRRLVSEIIGRSSTDLAARISEYSERSFRIVRSELAFLNDYFYTRYPVLFWRGFPLIAFILWLGIDLHRIYRPKRERPPTYMLSDWTKVMVLCEYTAGSLQRFPRWFCKLFLWFLCTPRSTIVHRCTRRSIMMAPGRRKTCHFKVTQLAELEKDFLEDKIPSLETNFPSFMSMFKLFPTCSHAILVWHIATSLCEIEIELAQHYNTCLTNSEVLRAVKAAMKCCSSQPYVVKEERIEGALRANYVVASCLSRYCAYLLISEPDLLPDTYLTSTEIFASAVAEASDVLKGSDNMQKTDASWGCRKRREHEQTPPQSDTSEKCTTC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0061340 | OsLiXu_Ung0061340.01 | ChrUN-Ctg462 | 265945 | 267988 | + | NAM | ||
| CDS seq | atggcgaagacgagcgaaattgtcaaatggttcttcctatttctgaagacagagagagcgatgcttatgcggatcgagttccttgtggagctcattgccgttctgttcctgctgatgtcgttcttggacatgttccgtcgccggtcacgcaactcggccatcaagaacagcttactgatcctcgacgccgtatgcgattccacgctgatttacacgattgggctgatgcagaacgcgccgttcaagaatgacctgtttccagtgtgggcgctcgtgctggttaacctccggagcagcgtctgcttcatctcggcatacggcatccctgaccaagagaaccgccgcatttctgaggcagcaagggtgatggcacttcttggggttgccttcctgaacagcacattcaacagcgagctaaagcatcctatctgggcactctgggcaatgctgcagttcagaagcttctacctcgtatgggcttacattcgtgctacagagtccttcttgcatggatggagctcaccacttctggcagcatatatgggcacctccgatgttgttgctgcgaatggggatccgatcacaatgcaggggtacaggtacttcgtctctggagatcagaagcagaaaataagtgtgaagccacctatgtacaagttcagcctaactgcgccggaacgcaagaagagaatgctcgtcacgcttgacaaggcttggctgcctagtgagcagcagaattcagccggcaacgacaacgatccagaaaacgaaggtgtggtcagttcgactgacatccggacaccacagatgaaagacatgtgcctatctttcgcactgtaccggctactccgttgcaggttcgacgacttgagcctgccacgcgacagcgttgtccacaccagaagattggtcagtgaaatcatcggcagaagcagcacggacctggctgcgagaataagcgaatacagcgagaggagcttcaggattgtgaggtccgagctagcattcctcaacgactacttctacacgaggtaccccgtcctcttctggcgtggcttcccactcatcgctttcatcctttggcttggaatcgatctccacagaatctacaggcccaagagggagagaccgcccacctacatgctttcggactggaccaaggtgatggttctgtgcgaatacactgctgggagcctacaacgtttcccgcgatggttttgcaagctctttctctggttcttgtgcaccccaagatccacaatcgtccaccgttgcacaagaagatcgatcatgatggctcccggaagacgtaaaacatgccattttaaggtcactcagctcgctgaactcgagaaagattttctggaggataagataccatctttggagacgaatttcccaagtttcatgtcaatgtttaagttatttccaacatgctcccacgccatcctcgtgtggcatatagcaacaagcctgtgtgagattgagattgagctggctcagcactacaacacatgcctgactaattcagaggtgctgcgtgcagtcaaggccgccatgaaatgttgctcctcgcagccctacgtcgtgaaggaagagaggattgagggcgccttgcgagccaactacgtagtcgcaagctgtctatcaagatactgcgcctatctgctcatttcagagcccgatttgctgccagacacctacttgacctctacggagatattcgcgagcgccgtggctgaggcttcagatgttctcaagggctctgacaacatgcagaaaactgatgcgtcatggggatgtcgtaaacgacgagaacacgaacagacgccaccccaatcagatacttcagagaagtgcacaacttgctaa
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| Protein seq | MAKTSEIVKWFFLFLKTERAMLMRIEFLVELIAVLFLLMSFLDMFRRRSRNSAIKNSLLILDAVCDSTLIYTIGLMQNAPFKNDLFPVWALVLVNLRSSVCFISAYGIPDQENRRISEAARVMALLGVAFLNSTFNSELKHPIWALWAMLQFRSFYLVWAYIRATESFLHGWSSPLLAAYMGTSDVVAANGDPITMQGYRYFVSGDQKQKISVKPPMYKFSLTAPERKKRMLVTLDKAWLPSEQQNSAGNDNDPENEGVVSSTDIRTPQMKDMCLSFALYRLLRCRFDDLSLPRDSVVHTRRLVSEIIGRSSTDLAARISEYSERSFRIVRSELAFLNDYFYTRYPVLFWRGFPLIAFILWLGIDLHRIYRPKRERPPTYMLSDWTKVMVLCEYTAGSLQRFPRWFCKLFLWFLCTPRSTIVHRCTRRSIMMAPGRRKTCHFKVTQLAELEKDFLEDKIPSLETNFPSFMSMFKLFPTCSHAILVWHIATSLCEIEIELAQHYNTCLTNSEVLRAVKAAMKCCSSQPYVVKEERIEGALRANYVVASCLSRYCAYLLISEPDLLPDTYLTSTEIFASAVAEASDVLKGSDNMQKTDASWGCRKRREHEQTPPQSDTSEKCTTC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g31290 | SBH | 0.0 | 0.000000 | 0.050495 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012910 | SBH | 0.0 | 1.012394 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013120 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012700 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012870 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0273100 | SBH | 0.004278 | 0.015438 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0293900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
