Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0060420 | OGI:99057400 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg451:180188-183455 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttactgccctaaaattgcttctcttgccatatctgctcctactggcatcagcttcatgtactcaaggattgcctttcagcaataacactgatctggatgccttgctaggattcaaggcaggtctaagacatcagtcagatgcactggcttcatggaacataacaagaagctactgtcagtggtctggtgtcatctgcagtcataggcataagcaaagggtactagcactgaatctcacctcgactgggctccatggctacatatccgcttccattgggaatctcacatatttgagaagtctagatcttagttgcaatcaactttatggtgaaatccctttgacgattggtcggctgtcgaagttgtcatatctcgacttgtcaaacaattcattccaaggtgaaattccttggacaattggccagctaccgcagttatcctacctgtacctgtcaaacaattcacttcaaggcgagatcactgatgaactaaggaactgcactaaccttgctagcatcaaacttgacttaaacagcctgaacggaaaaatccctgattggtttggaggttttccgaagctcaattccatttcactagggaagaacatcttcaccgggatcatcccgcaatcacttggcaacctctcggcgctgtcggaacttttcctcaatgagaatcacctcactggcccaatccctgaggcccttggcaagatcagcagtcttgagaggttggcactgcaagtaaatcatctgtcaggcaccattccaagaacactcctcaacctttcctcgctgatccacattggcctgcaggagaatgagttgcatggaagattgccttccgatttgggcaatggcctaccaaaaatccagtacttcatcattgccttgaaccatttcacaggaagcatcccaccttcaatagcaaatgcaaccaacatgcgctccatagacctctcttctaacaacttcaccggaatcatacctccggagattggaatgctctgcctgaaatacctgatgctgcaaagaaaccagctgaaggcaaccagtgtcaaggactggaggttcgtcacgttattgacaaattgcacaagacttcgtgctgtgacaatacaaaacaacaggcttggtggagcactgccaaactctatcaccaacctatcagcacagctcgaactcctggatatcggatttaacaaaatttcaggtaaaataccagatggtattaacaacttcctcaaattaattaagttgggtctctctaacaatcgtttcagtggtccgatacctgacagcataggaaggcttgaaacactgcagtacttgacactagaaaataacctattgtctgggatcataccatcctcactcggaaacttaacgcaactgcagcaactctctctagataacaatagcttggaggggccattgccagcaagcattgggaacctgcaacaacttatcatcgcaaccttttcaaacaataaacttagagatcaattacctggagagatttttaatcttccatccttgtcgtacgttctggatctgtcaaggaatcattttagcggttctcttccatcagcagtaggtggtctcacaaaacttacatacttatacatgtacagtaacaacttttctgggttgctaccaaatagtctcagcaactgtcagagcttgatggaacttcatttggacgataacttctttaatggtaccattcctgtatcagtgagcaaaatgcgaggattagtactgctaaatttgaccaaaaatagtttttttggtgcaattcctcaggacttaggactcatggatggactgaaagagctatatctttcacacaataatctatctgcacaaatcccagagaacatggaaaacatgacatcattatattggcttgacatatcctttaataaccttgatggccaagtcccagcacatggagtgtttgccaatttgacagggtttaagtttgatgggaatgataagctttgtggtggtattggtgagcttcatttgccttcatgcccaaccaaacccatgggacatagtcgaagtatactcctagtcactcaaaaagtggttattccgactgctgttacaatctttgtgtgctttatcctggcagctgttgccttctctatacggaagaaactaaggccttcatccatgcgaacaacggtagcccctctgccagatggcgtgtatcctcgagtatcctattatgaactgtttcaatcaacgaatggcttcaatgtcaacaatttggttggcactggacggtatggatctgtttataaggggacaatgctgctcaaaaagtcagaaactactgtagctatcaaggttttcaatcttgaacaatctggttcttccaaaagttttgtggctgagtgtaacgcaattagcaaaatccgccatcgcaacttgattggtgtcataacttgctgttcttgctctggcttgaatcaaaatgactttaaagccatagtattcaagttcatgcctcacggaaaccttgataaatggttacatccggaggtacactcatcagatccagttaaagttctaacactaatgcagagattgagcattgcttctgatatcgccgctgcactagattatttgcacaacagctgccgtccaacaatagttcactgtgatttcaagcccagcaacattcttcttggggaggacatggttgcgcatgttggagaccttggccttgccaagattctcactgacccagaaggagagcaattgatcaactcaaagagttctgtagggctaatgggaacaattggatatattgctccaggtactcaatactttttttcaacaaatcttatggtttgagccatgcaatacttaattatcatgtttatgcactgcagaatatgctgaatgtggtcaaatttctccatctggtgatgtatatagctttggtatagtgctccttgagatgtttacagggaaggcgcctacaaatgacatgtttactgatggattgacattgcagaagtatgcagaaatggcatatccagcacgactgatcgatattgttgacccccatctgctatcaattgagaacacattgggagaaatcaactgcgtcatgagctcagtcacaagactcgcactggtatgcagtaggatgaaaccaactgagaggctgcgcatgagagatgttgcagatgagatgcagacaataatggcttcttatgttacagaaatagacaaagtttctctatga
More
|
||||||||||
| CDS seq | atgtttactgccctaaaattgcttctcttgccatatctgctcctactggcatcagcttcatgtactcaaggattgcctttcagcaataacactgatctggatgccttgctaggattcaaggcaggtctaagacatcagtcagatgcactggcttcatggaacataacaagaagctactgtcagtggtctggtgtcatctgcagtcataggcataagcaaagggtactagcactgaatctcacctcgactgggctccatggctacatatccgcttccattgggaatctcacatatttgagaagtctagatcttagttgcaatcaactttatggtgaaatccctttgacgattggtcggctgtcgaagttgtcatatctcgacttgtcaaacaattcattccaaggtgaaattccttggacaattggccagctaccgcagttatcctacctgtacctgtcaaacaattcacttcaaggcgagatcactgatgaactaaggaactgcactaaccttgctagcatcaaacttgacttaaacagcctgaacggaaaaatccctgattggtttggaggttttccgaagctcaattccatttcactagggaagaacatcttcaccgggatcatcccgcaatcacttggcaacctctcggcgctgtcggaacttttcctcaatgagaatcacctcactggcccaatccctgaggcccttggcaagatcagcagtcttgagaggttggcactgcaagtaaatcatctgtcaggcaccattccaagaacactcctcaacctttcctcgctgatccacattggcctgcaggagaatgagttgcatggaagattgccttccgatttgggcaatggcctaccaaaaatccagtacttcatcattgccttgaaccatttcacaggaagcatcccaccttcaatagcaaatgcaaccaacatgcgctccatagacctctcttctaacaacttcaccggaatcatacctccggagattggaatgctctgcctgaaatacctgatgctgcaaagaaaccagctgaaggcaaccagtgtcaaggactggaggttcgtcacgttattgacaaattgcacaagacttcgtgctgtgacaatacaaaacaacaggcttggtggagcactgccaaactctatcaccaacctatcagcacagctcgaactcctggatatcggatttaacaaaatttcaggtaaaataccagatggtattaacaacttcctcaaattaattaagttgggtctctctaacaatcgtttcagtggtccgatacctgacagcataggaaggcttgaaacactgcagtacttgacactagaaaataacctattgtctgggatcataccatcctcactcggaaacttaacgcaactgcagcaactctctctagataacaatagcttggaggggccattgccagcaagcattgggaacctgcaacaacttatcatcgcaaccttttcaaacaataaacttagagatcaattacctggagagatttttaatcttccatccttgtcgtacgttctggatctgtcaaggaatcattttagcggttctcttccatcagcagtaggtggtctcacaaaacttacatacttatacatgtacagtaacaacttttctgggttgctaccaaatagtctcagcaactgtcagagcttgatggaacttcatttggacgataacttctttaatggtaccattcctgtatcagtgagcaaaatgcgaggattagtactgctaaatttgaccaaaaatagtttttttggtgcaattcctcaggacttaggactcatggatggactgaaagagctatatctttcacacaataatctatctgcacaaatcccagagaacatggaaaacatgacatcattatattggcttgacatatcctttaataaccttgatggccaagtcccagcacatggagtgtttgccaatttgacagggtttaagtttgatgggaatgataagctttgtggtggtattggtgagcttcatttgccttcatgcccaaccaaacccatgggacatagtcgaagtatactcctagtcactcaaaaagtggttattccgactgctgttacaatctttgtgtgctttatcctggcagctgttgccttctctatacggaagaaactaaggccttcatccatgcgaacaacggtagcccctctgccagatggcgtgtatcctcgagtatcctattatgaactgtttcaatcaacgaatggcttcaatgtcaacaatttggttggcactggacggtatggatctgtttataaggggacaatgctgctcaaaaagtcagaaactactgtagctatcaaggttttcaatcttgaacaatctggttcttccaaaagttttgtggctgagtgtaacgcaattagcaaaatccgccatcgcaacttgattggtgtcataacttgctgttcttgctctggcttgaatcaaaatgactttaaagccatagtattcaagttcatgcctcacggaaaccttgataaatggttacatccggaggtacactcatcagatccagttaaagttctaacactaatgcagagattgagcattgcttctgatatcgccgctgcactagattatttgcacaacagctgccgtccaacaatagttcactgtgatttcaagcccagcaacattcttcttggggaggacatggttgcgcatgttggagaccttggccttgccaagattctcactgacccagaaggagagcaattgatcaactcaaagagttctgtagggctaatgggaacaattggatatattgctccagaatatgctgaatgtggtcaaatttctccatctggtgatgtatatagctttggtatagtgctccttgagatgtttacagggaaggcgcctacaaatgacatgtttactgatggattgacattgcagaagtatgcagaaatggcatatccagcacgactgatcgatattgttgacccccatctgctatcaattgagaacacattgggagaaatcaactgcgtcatgagctcagtcacaagactcgcactggtatgcagtaggatgaaaccaactgagaggctgcgcatgagagatgttgcagatgagatgcagacaataatggcttcttatgttacagaaatagacaaagtttctctatga
More
|
||||||||||
| Protein seq | MFTALKLLLLPYLLLLASASCTQGLPFSNNTDLDALLGFKAGLRHQSDALASWNITRSYCQWSGVICSHRHKQRVLALNLTSTGLHGYISASIGNLTYLRSLDLSCNQLYGEIPLTIGRLSKLSYLDLSNNSFQGEIPWTIGQLPQLSYLYLSNNSLQGEITDELRNCTNLASIKLDLNSLNGKIPDWFGGFPKLNSISLGKNIFTGIIPQSLGNLSALSELFLNENHLTGPIPEALGKISSLERLALQVNHLSGTIPRTLLNLSSLIHIGLQENELHGRLPSDLGNGLPKIQYFIIALNHFTGSIPPSIANATNMRSIDLSSNNFTGIIPPEIGMLCLKYLMLQRNQLKATSVKDWRFVTLLTNCTRLRAVTIQNNRLGGALPNSITNLSAQLELLDIGFNKISGKIPDGINNFLKLIKLGLSNNRFSGPIPDSIGRLETLQYLTLENNLLSGIIPSSLGNLTQLQQLSLDNNSLEGPLPASIGNLQQLIIATFSNNKLRDQLPGEIFNLPSLSYVLDLSRNHFSGSLPSAVGGLTKLTYLYMYSNNFSGLLPNSLSNCQSLMELHLDDNFFNGTIPVSVSKMRGLVLLNLTKNSFFGAIPQDLGLMDGLKELYLSHNNLSAQIPENMENMTSLYWLDISFNNLDGQVPAHGVFANLTGFKFDGNDKLCGGIGELHLPSCPTKPMGHSRSILLVTQKVVIPTAVTIFVCFILAAVAFSIRKKLRPSSMRTTVAPLPDGVYPRVSYYELFQSTNGFNVNNLVGTGRYGSVYKGTMLLKKSETTVAIKVFNLEQSGSSKSFVAECNAISKIRHRNLIGVITCCSCSGLNQNDFKAIVFKFMPHGNLDKWLHPEVHSSDPVKVLTLMQRLSIASDIAAALDYLHNSCRPTIVHCDFKPSNILLGEDMVAHVGDLGLAKILTDPEGEQLINSKSSVGLMGTIGYIAPEYAECGQISPSGDVYSFGIVLLEMFTGKAPTNDMFTDGLTLQKYAEMAYPARLIDIVDPHLLSIENTLGEINCVMSSVTRLALVCSRMKPTERLRMRDVADEMQTIMASYVTEIDKVSL |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0060420 | OsLiXu_Ung0060420.01 | ChrUN-Ctg451 | 180188 | 183455 | + | NAM | ||
| CDS seq | atgtttactgccctaaaattgcttctcttgccatatctgctcctactggcatcagcttcatgtactcaaggattgcctttcagcaataacactgatctggatgccttgctaggattcaaggcaggtctaagacatcagtcagatgcactggcttcatggaacataacaagaagctactgtcagtggtctggtgtcatctgcagtcataggcataagcaaagggtactagcactgaatctcacctcgactgggctccatggctacatatccgcttccattgggaatctcacatatttgagaagtctagatcttagttgcaatcaactttatggtgaaatccctttgacgattggtcggctgtcgaagttgtcatatctcgacttgtcaaacaattcattccaaggtgaaattccttggacaattggccagctaccgcagttatcctacctgtacctgtcaaacaattcacttcaaggcgagatcactgatgaactaaggaactgcactaaccttgctagcatcaaacttgacttaaacagcctgaacggaaaaatccctgattggtttggaggttttccgaagctcaattccatttcactagggaagaacatcttcaccgggatcatcccgcaatcacttggcaacctctcggcgctgtcggaacttttcctcaatgagaatcacctcactggcccaatccctgaggcccttggcaagatcagcagtcttgagaggttggcactgcaagtaaatcatctgtcaggcaccattccaagaacactcctcaacctttcctcgctgatccacattggcctgcaggagaatgagttgcatggaagattgccttccgatttgggcaatggcctaccaaaaatccagtacttcatcattgccttgaaccatttcacaggaagcatcccaccttcaatagcaaatgcaaccaacatgcgctccatagacctctcttctaacaacttcaccggaatcatacctccggagattggaatgctctgcctgaaatacctgatgctgcaaagaaaccagctgaaggcaaccagtgtcaaggactggaggttcgtcacgttattgacaaattgcacaagacttcgtgctgtgacaatacaaaacaacaggcttggtggagcactgccaaactctatcaccaacctatcagcacagctcgaactcctggatatcggatttaacaaaatttcaggtaaaataccagatggtattaacaacttcctcaaattaattaagttgggtctctctaacaatcgtttcagtggtccgatacctgacagcataggaaggcttgaaacactgcagtacttgacactagaaaataacctattgtctgggatcataccatcctcactcggaaacttaacgcaactgcagcaactctctctagataacaatagcttggaggggccattgccagcaagcattgggaacctgcaacaacttatcatcgcaaccttttcaaacaataaacttagagatcaattacctggagagatttttaatcttccatccttgtcgtacgttctggatctgtcaaggaatcattttagcggttctcttccatcagcagtaggtggtctcacaaaacttacatacttatacatgtacagtaacaacttttctgggttgctaccaaatagtctcagcaactgtcagagcttgatggaacttcatttggacgataacttctttaatggtaccattcctgtatcagtgagcaaaatgcgaggattagtactgctaaatttgaccaaaaatagtttttttggtgcaattcctcaggacttaggactcatggatggactgaaagagctatatctttcacacaataatctatctgcacaaatcccagagaacatggaaaacatgacatcattatattggcttgacatatcctttaataaccttgatggccaagtcccagcacatggagtgtttgccaatttgacagggtttaagtttgatgggaatgataagctttgtggtggtattggtgagcttcatttgccttcatgcccaaccaaacccatgggacatagtcgaagtatactcctagtcactcaaaaagtggttattccgactgctgttacaatctttgtgtgctttatcctggcagctgttgccttctctatacggaagaaactaaggccttcatccatgcgaacaacggtagcccctctgccagatggcgtgtatcctcgagtatcctattatgaactgtttcaatcaacgaatggcttcaatgtcaacaatttggttggcactggacggtatggatctgtttataaggggacaatgctgctcaaaaagtcagaaactactgtagctatcaaggttttcaatcttgaacaatctggttcttccaaaagttttgtggctgagtgtaacgcaattagcaaaatccgccatcgcaacttgattggtgtcataacttgctgttcttgctctggcttgaatcaaaatgactttaaagccatagtattcaagttcatgcctcacggaaaccttgataaatggttacatccggaggtacactcatcagatccagttaaagttctaacactaatgcagagattgagcattgcttctgatatcgccgctgcactagattatttgcacaacagctgccgtccaacaatagttcactgtgatttcaagcccagcaacattcttcttggggaggacatggttgcgcatgttggagaccttggccttgccaagattctcactgacccagaaggagagcaattgatcaactcaaagagttctgtagggctaatgggaacaattggatatattgctccagaatatgctgaatgtggtcaaatttctccatctggtgatgtatatagctttggtatagtgctccttgagatgtttacagggaaggcgcctacaaatgacatgtttactgatggattgacattgcagaagtatgcagaaatggcatatccagcacgactgatcgatattgttgacccccatctgctatcaattgagaacacattgggagaaatcaactgcgtcatgagctcagtcacaagactcgcactggtatgcagtaggatgaaaccaactgagaggctgcgcatgagagatgttgcagatgagatgcagacaataatggcttcttatgttacagaaatagacaaagtttctctatga
More
|
|||||||
| Protein seq | MFTALKLLLLPYLLLLASASCTQGLPFSNNTDLDALLGFKAGLRHQSDALASWNITRSYCQWSGVICSHRHKQRVLALNLTSTGLHGYISASIGNLTYLRSLDLSCNQLYGEIPLTIGRLSKLSYLDLSNNSFQGEIPWTIGQLPQLSYLYLSNNSLQGEITDELRNCTNLASIKLDLNSLNGKIPDWFGGFPKLNSISLGKNIFTGIIPQSLGNLSALSELFLNENHLTGPIPEALGKISSLERLALQVNHLSGTIPRTLLNLSSLIHIGLQENELHGRLPSDLGNGLPKIQYFIIALNHFTGSIPPSIANATNMRSIDLSSNNFTGIIPPEIGMLCLKYLMLQRNQLKATSVKDWRFVTLLTNCTRLRAVTIQNNRLGGALPNSITNLSAQLELLDIGFNKISGKIPDGINNFLKLIKLGLSNNRFSGPIPDSIGRLETLQYLTLENNLLSGIIPSSLGNLTQLQQLSLDNNSLEGPLPASIGNLQQLIIATFSNNKLRDQLPGEIFNLPSLSYVLDLSRNHFSGSLPSAVGGLTKLTYLYMYSNNFSGLLPNSLSNCQSLMELHLDDNFFNGTIPVSVSKMRGLVLLNLTKNSFFGAIPQDLGLMDGLKELYLSHNNLSAQIPENMENMTSLYWLDISFNNLDGQVPAHGVFANLTGFKFDGNDKLCGGIGELHLPSCPTKPMGHSRSILLVTQKVVIPTAVTIFVCFILAAVAFSIRKKLRPSSMRTTVAPLPDGVYPRVSYYELFQSTNGFNVNNLVGTGRYGSVYKGTMLLKKSETTVAIKVFNLEQSGSSKSFVAECNAISKIRHRNLIGVITCCSCSGLNQNDFKAIVFKFMPHGNLDKWLHPEVHSSDPVKVLTLMQRLSIASDIAAALDYLHNSCRPTIVHCDFKPSNILLGEDMVAHVGDLGLAKILTDPEGEQLINSKSSVGLMGTIGYIAPEYAECGQISPSGDVYSFGIVLLEMFTGKAPTNDMFTDGLTLQKYAEMAYPARLIDIVDPHLLSIENTLGEINCVMSSVTRLALVCSRMKPTERLRMRDVADEMQTIMASYVTEIDKVSL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0374600 | SBH | 1.491331 | 0.000000 | 1.233228 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22860 | SBH | 1.008516 | 0.000000 | 0.317457 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0374600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008680 | SBH | 0.000000 | 2.435891 | 2.090224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008730 | SBH | 0.0 | 0.673813 | 1.387717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008600 | SBH | 0.931028 | 1.382466 | 2.908578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008920 | SBH | 0.107572 | 0.066610 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008760 | SBH | 1.638693 | 0.0 | 3.717686 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0205800 | SBH | 1.3293965 | 1.2528815 | 1.364983 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008720 | SBH | 0.256624 | 0.050250 | 0.270018 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0219500 | SBH | 2.3914775 | 4.486964 | 6.3143265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008510 | SBH | 0.187165 | 0.104116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008510 | SBH | 0.459251 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008920 | SBH | 3.933244 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008500 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009030 | SBH | 0.000000 | 1.245977 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008770 | SBH | 0.108627 | 0.718072 | 1.110094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008740 | SBH | 0.290839 | 0.893232 | 2.794286 |
