Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0056950 | OGI:99054780 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg428:50-2810 | ||||||||
| Gene Symbol | RLR1, OsRLR1 | ||||||||||
| DNA seq | atcagaggccttgcattcgacattgaggatgttatcgatgagttcacctacaagttgggagaagatcgcgaaggcatgtttctgctgaaggcattcaggaggatcagacagatcaagacatggtatcggttggccaacagtctgcaggatatcaaagttagcctcaagagtgctgcagagaggaggtgcagatatgacctgaagggtgttcgaagggagaggaaactgatgcggttagggagcttgaatcagagatctacagaatcagtacatttcaagagggaagctgatcttgtggggattgctgagaacaaacagctgttgatggattggttgaaagatgaggagcagcagcacatgataattactgtatggggtatgggcggtgtcggttaaaacgacacttgttgctcatgtttacagtgctatcaagactgactttgatacttgtgcttggatcacagtgtctaatagctatgaagccgatgatttgctgaaacaaatgttgcggagttccggaagaatgaccgcaagaaggagttcccaaaggatgtcgatgtcacagattatagaagcctggttgagacaatccgactttacctggagaagaaaaggtatgtttgttttagatgacgtgtggagtgtgaatgtttggtttgatatcaaagatgcattttctggtgggaaacatgggcggataattttacatctaggatctatgaggtcgctctactcgctcctgaaagccaaaagattaaccttcaacccttacaaaatcactatgcatgggaccttttttgtaaagaggcattttggaagtctgaaaacaggagttgtccagtagaattgcacccttgggcccaaaggtttgttgacaagtgcaagggcttgccaatcgctatagtgtgcatagggcgcctcctttcattcaagagtgcaaatttgttggagtgggagaatgtgtacagaaatcttgagatgcagtttaccaacaattacatccttgacatgaacataatcctgaaggttagtttggaagacttgccacacaacatgaagaattgcttcctctattgctccatgttcccagaaaattatgtgatgcaaaggaagtggttagtacggctttggattgcagaaggatttattgaagagagtgagcacaagacgctggaggaggtagcagaggattacttgaccgaacttattaacagatgtttgttagtggaggtcaagaggaatgagtctggatatattgatgatttccagatgcatgatatatttcgtgttttagctcttagcaaggcacgagaagagaacttttgctttgtcttagactacacaagactcatcttattggcaaagcacgccgtttgtcgattcaaaggggggatatctcacaaattgcagaaaatgtgccacatctgcggtcattgcttgttttccacaattcacttagtttcaattcacttcgtttgtttgcaaggtctgtgaagttactgtctgtcctgaatctgcaagatagttcaattgagagtctacccaatgatgtgtttgatttgtttaacttacgttttctgggccttagacgaactaatattgcatatatctcaagatcaattgggagacttcaaaatttggtcgtgttggatgcttggaaaagcaaaattatgaacctaccagaggaaattataaggctatctaagttgacacatcttattgtgactgtgaaaccagtgattacttctatgaattttgttccttctgttggcatacctgcacctactggtttatggtctttgggatgtttgcagaccttattactgatggaagctagttctgaaatggtcttttaccttggtgctctggtgaatttgagatcatttcgcatcagcaaagtacaaggccgccattgtgccaagctgtttgtggcaatcaccaatatgtttcatcttgtccgcctcgggatacacgcaaacgacaatcaggaggttctacaacttgaagcattgaaaccatctccgttacttcagaagcttatcttgcagggggcattagataaagaatcattgcctcagttcttcatgtcaatcagtaaactgaaaagcctcaccattctacggcttgtctggtcgaaactcgacgaagaagacttctactatcttgaggaattacagcagctagtgaagcttcagctttatgatgcatataatggcaagaggctgtctttccaggcaacatcatttccaaagctcaggatactgaagatctggggagctcctcacctcagtctgatcaagatagaaagaggggccatgtcaagcatggttgatcttaagctcctgctctgccctgaattgaagttgttgcctcgcggcattgagcatgtgaccactctcgaagagatgactttggattctacagcagaggagcttgtgggcagggttaggaagaagaatgaggccaggatttctcatgtcaagagagtttatgttgggttcatcagaaatggtgagctggctgcagaaaggatacaataaatcgatgtctatctagacaatgtcatgtatcttttcaactatgattttcctattttgtacatttataattttgtattggtcttatgatgtaatccagacaatgccattttccttttcagatatagtttcttatctgtaagtatttgtacatatttgtgacatataaacatgttttgggttttattgtcaatatatgaatgtatacaaataagattcttccc
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| CDS seq | atgtttctgctgaaggcattcaggaggatcagacagatcaagacatggtatcggttggccaacagtctgcaggatatcaaagttagcctcaagagtgctgcagagaggaggtgcagatatgacctgaagggtgttcgaagggagaggaaactgatgcggttagggagcttgaatcagagatctacagaatcagtacatttcaagagggaagctgatcttgtggggattgctgagaacaaacagctgttgatggattggttgaaagatgaggagcagcagcacatgataattactttccggaagaatgaccgcaagaaggagttcccaaaggatgtcgatgtcacagattatagaagcctggttgagacaatccgactttacctggagaagaaaagatgcattttctggtgggaaacatgggcggataattttacatctaggatctatgaggtcgctctactcgctcctgaaagccaaaagattaaccttcaacccttacaaaatcactatgcatgggaccttttttgtaaagaggcattttggaagtctgaaaacaggagttgtccagtagaattgcacccttgggcccaaaggtttgttgacaagtgcaagggcttgccaatcgctatagtgtgcatagggcgcctcctttcattcaagagtgcaaatttgttggagtgggagaatgtgtacagaaatcttgagatgcagtttaccaacaattacatccttgacatgaacataatcctgaaggttagtttggaagacttgccacacaacatgaagaattgcttcctctattgctccatgttcccagaaaattatgtgatgcaaaggaagtggttagtacggctttggattgcagaaggatttattgaagagagtgagcacaagacgctggaggaggtagcagaggattacttgaccgaacttattaacagatgtttgttagtggaggtcaagaggaatgagtctggatatattgatgatttccagatgcatgatatatttcgtgttttagctcttagcaaggcacgagaagagaacttttgctttgtcttagactacacaagactcatcttattggcaaagcacgccgtttgtcgattcaaaggggggatatctcacaaattgcagaaaatgtgccacatctgcggtcattgcttgttttccacaattcacttagtttcaattcacttcgtttgtttgcaagatagttcaattgagagtctacccaatgatgtgtttgatttgtttaacttacgttttctgggccttagacgaactaatattgcatatatctcaagatcaattgggagacttcaaaatttggtcgtgttggatgcttggaaaagcaaaattatgaacctaccagaggaaattataaggctatctaagttgacacatcttattgtgactgtgaaaccagtgattacttctatgaattttgttccttctgttggcatacctgcacctactggtttatggtctttgggatgtttgcagaccttattactgatggaagctagttctgaaatggtcttttaccttggtgctctggtgaatttgagatcatttcgcatcagcaaagtacaaggccgccattgtgccaagctgtttgtggcaatcaccaatatgtttcatcttgtccgcctcgggatacacgcaaacgacaatcaggaggttctacaacttgaagcattgaaaccatctccgttacttcagaagcttatcttgcagggggcattagataaagaatcattgcctcagttcttcatgtcaatcagtaaactgaaaagcctcaccattctacggcttgtctggtcgaaactcgacgaagaagacttctactatcttgaggaattacagcagctagtgaagcttcagctttatgatgcatataatggcaagaggctgtctttccaggcaacatcatttccaaagctcaggatactgaagatctggggagctcctcacctcagtctgatcaagatagaaagaggggccatgtcaagcatggttgatcttaagctcctgctctgccctgaattgaagttgttgcctcgcggcattgagcatgtgaccactctcgaagagatgactttggattctacagcagaggagcttgtgggcagggttaggaagaagaatgaggccaggatttctcatgtcaagagagtttatgttgggttcatcagaaatggtgagctggctgcagaaaggatacaataa
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| Protein seq | MFLLKAFRRIRQIKTWYRLANSLQDIKVSLKSAAERRCRYDLKGVRRERKLMRLGSLNQRSTESVHFKREADLVGIAENKQLLMDWLKDEEQQHMIITFRKNDRKKEFPKDVDVTDYRSLVETIRLYLEKKRCIFWWETWADNFTSRIYEVALLAPESQKINLQPLQNHYAWDLFCKEAFWKSENRSCPVELHPWAQRFVDKCKGLPIAIVCIGRLLSFKSANLLEWENVYRNLEMQFTNNYILDMNIILKVSLEDLPHNMKNCFLYCSMFPENYVMQRKWLVRLWIAEGFIEESEHKTLEEVAEDYLTELINRCLLVEVKRNESGYIDDFQMHDIFRVLALSKAREENFCFVLDYTRLILLAKHAVCRFKGGISHKLQKMCHICGHCLFSTIHLVSIHFVCLQDSSIESLPNDVFDLFNLRFLGLRRTNIAYISRSIGRLQNLVVLDAWKSKIMNLPEEIIRLSKLTHLIVTVKPVITSMNFVPSVGIPAPTGLWSLGCLQTLLLMEASSEMVFYLGALVNLRSFRISKVQGRHCAKLFVAITNMFHLVRLGIHANDNQEVLQLEALKPSPLLQKLILQGALDKESLPQFFMSISKLKSLTILRLVWSKLDEEDFYYLEELQQLVKLQLYDAYNGKRLSFQATSFPKLRILKIWGAPHLSLIKIERGAMSSMVDLKLLLCPELKLLPRGIEHVTTLEEMTLDSTAEELVGRVRKKNEARISHVKRVYVGFIRNGELAAERIQ |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056950 | OsLiXu_Ung0056950.01 | ChrUN-Ctg428 | 50 | 2810 | + | NAM | ||
| CDS seq | atgtttctgctgaaggcattcaggaggatcagacagatcaagacatggtatcggttggccaacagtctgcaggatatcaaagttagcctcaagagtgctgcagagaggaggtgcagatatgacctgaagggtgttcgaagggagaggaaactgatgcggttagggagcttgaatcagagatctacagaatcagtacatttcaagagggaagctgatcttgtggggattgctgagaacaaacagctgttgatggattggttgaaagatgaggagcagcagcacatgataattactttccggaagaatgaccgcaagaaggagttcccaaaggatgtcgatgtcacagattatagaagcctggttgagacaatccgactttacctggagaagaaaagatgcattttctggtgggaaacatgggcggataattttacatctaggatctatgaggtcgctctactcgctcctgaaagccaaaagattaaccttcaacccttacaaaatcactatgcatgggaccttttttgtaaagaggcattttggaagtctgaaaacaggagttgtccagtagaattgcacccttgggcccaaaggtttgttgacaagtgcaagggcttgccaatcgctatagtgtgcatagggcgcctcctttcattcaagagtgcaaatttgttggagtgggagaatgtgtacagaaatcttgagatgcagtttaccaacaattacatccttgacatgaacataatcctgaaggttagtttggaagacttgccacacaacatgaagaattgcttcctctattgctccatgttcccagaaaattatgtgatgcaaaggaagtggttagtacggctttggattgcagaaggatttattgaagagagtgagcacaagacgctggaggaggtagcagaggattacttgaccgaacttattaacagatgtttgttagtggaggtcaagaggaatgagtctggatatattgatgatttccagatgcatgatatatttcgtgttttagctcttagcaaggcacgagaagagaacttttgctttgtcttagactacacaagactcatcttattggcaaagcacgccgtttgtcgattcaaaggggggatatctcacaaattgcagaaaatgtgccacatctgcggtcattgcttgttttccacaattcacttagtttcaattcacttcgtttgtttgcaagatagttcaattgagagtctacccaatgatgtgtttgatttgtttaacttacgttttctgggccttagacgaactaatattgcatatatctcaagatcaattgggagacttcaaaatttggtcgtgttggatgcttggaaaagcaaaattatgaacctaccagaggaaattataaggctatctaagttgacacatcttattgtgactgtgaaaccagtgattacttctatgaattttgttccttctgttggcatacctgcacctactggtttatggtctttgggatgtttgcagaccttattactgatggaagctagttctgaaatggtcttttaccttggtgctctggtgaatttgagatcatttcgcatcagcaaagtacaaggccgccattgtgccaagctgtttgtggcaatcaccaatatgtttcatcttgtccgcctcgggatacacgcaaacgacaatcaggaggttctacaacttgaagcattgaaaccatctccgttacttcagaagcttatcttgcagggggcattagataaagaatcattgcctcagttcttcatgtcaatcagtaaactgaaaagcctcaccattctacggcttgtctggtcgaaactcgacgaagaagacttctactatcttgaggaattacagcagctagtgaagcttcagctttatgatgcatataatggcaagaggctgtctttccaggcaacatcatttccaaagctcaggatactgaagatctggggagctcctcacctcagtctgatcaagatagaaagaggggccatgtcaagcatggttgatcttaagctcctgctctgccctgaattgaagttgttgcctcgcggcattgagcatgtgaccactctcgaagagatgactttggattctacagcagaggagcttgtgggcagggttaggaagaagaatgaggccaggatttctcatgtcaagagagtttatgttgggttcatcagaaatggtgagctggctgcagaaaggatacaataa
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| Protein seq | MFLLKAFRRIRQIKTWYRLANSLQDIKVSLKSAAERRCRYDLKGVRRERKLMRLGSLNQRSTESVHFKREADLVGIAENKQLLMDWLKDEEQQHMIITFRKNDRKKEFPKDVDVTDYRSLVETIRLYLEKKRCIFWWETWADNFTSRIYEVALLAPESQKINLQPLQNHYAWDLFCKEAFWKSENRSCPVELHPWAQRFVDKCKGLPIAIVCIGRLLSFKSANLLEWENVYRNLEMQFTNNYILDMNIILKVSLEDLPHNMKNCFLYCSMFPENYVMQRKWLVRLWIAEGFIEESEHKTLEEVAEDYLTELINRCLLVEVKRNESGYIDDFQMHDIFRVLALSKAREENFCFVLDYTRLILLAKHAVCRFKGGISHKLQKMCHICGHCLFSTIHLVSIHFVCLQDSSIESLPNDVFDLFNLRFLGLRRTNIAYISRSIGRLQNLVVLDAWKSKIMNLPEEIIRLSKLTHLIVTVKPVITSMNFVPSVGIPAPTGLWSLGCLQTLLLMEASSEMVFYLGALVNLRSFRISKVQGRHCAKLFVAITNMFHLVRLGIHANDNQEVLQLEALKPSPLLQKLILQGALDKESLPQFFMSISKLKSLTILRLVWSKLDEEDFYYLEELQQLVKLQLYDAYNGKRLSFQATSFPKLRILKIWGAPHLSLIKIERGAMSSMVDLKLLLCPELKLLPRGIEHVTTLEEMTLDSTAEELVGRVRKKNEARISHVKRVYVGFIRNGELAAERIQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0163040 | SBH | 0.718288 | 0.628594 | 0.570293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07978 | SBH | 0.513929 | 0.378763 | 0.199848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0163040 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003750 | SBH | 0.060541 | 0.418124 | 0.710716 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003720 | SBH | 0.224891 | 0.342706 | 0.717078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003640 | SBH | 0.536834 | 0.710475 | 1.576163 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003950 | SBH | 0.058470 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003730 | SBH | 5.502186 | 0.0 | 4.323135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0074900 | SBH | 3.8807655 | 1.908998 | 2.8953545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003840 | SBH | 0.083312 | 0.051115 | 0.291311 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0082600 | SBH | 2.4748485 | 1.2290075 | 5.4913455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003680 | SBH | 0.202723 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003710 | SBH | 0.340554 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003860 | SBH | 5.963431 | 2.012196 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003610 | RBH | 0.220226 | 0.0 | 0.549242 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003940 | SBH | 0.150499 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003820 | SBH | 0.049963 | 0.0 | 0.495752 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003840 | SBH | 0.942294 | 0.0 | 0.500264 |
