Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0056750 | OGI:10013400 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg427:91792-96382 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaattaaactgaaatttctatacaaacaggacttcgaacgaccatataagttcaattaaggtctgaaataattaaacatgtgaaaaacataaactgaattagacatggcacatttgaaatgcatcattacaatttagaaacagggacatggtattcagagcatcactatacatttcaaaaagagcaaccttacaatcaccctaatgagcatcgtaattcaaacttgtggcctattcggttaacaaattatgagcagtctcagttattgtttttcatcccagctagtgtgtactttggtcctctctgcaacaaaaggaaatccattgaattggtgcctaaaagggatttcttagcttcactggttgctatacttccatacatacctataatgcaaaaaaaataaaaatgaaaaatccatctcccaaactgaactgaattatattagacaaagtaatcatacaagtgtggaagcttaacacccaaacctaaaatctagcaaacactgcaattcgtattaaattataaagatttaaatttctgagagaacaatgcaacttacctatttcacttcctgtggggcttttcttttagcataagctctatacctccatgaagattttatggggagatagtaatcaactaattgtcatccctttatataattatgctcgggaaatccttaatgaatacccccctgcctctgatggttagtgagatcttgcatgaagcttggaagctcccttagattggggcattgctcaatcaataaataccgaagagaacccgaggcagaacaaagagtgtcaggaagacgctctagctttggaagtccaatgatctgcaatgatcgaagactccatagcccatccatggcctcctctggatgcatcaaatccagctccgggcaattgtcgatgaacagctctcgcagactggagaggtgtgtcatgctggctgggagagaaggaagctttgggcaatcactgatccacagcatctgtagggcagtcaacgagccaatcccttctgacagtgatgttagttcactacatgagtgaagctgcagggatgttagtgaagcccagccacgaagtcctgcttctggcaactgcttttgcttcgatgtcaaactcaggtacctgaggctgattaacttgtttacatctctcggcaactcgattagttggtcacttcgataaagatcaagtgtctgaaggtttatgagcttgcatagggaattgggaaggtattttatggttttgttccaggtgaggtcaagatacctcaagtgcttcaaatttccaattgaatctgggagttcgtcaattctaactccggatataatcaatacacgtagaagcaataacttggacagcagcacttccagaaattttttgcttaaagaaccatgattacacgaactaataaaagttcgagcttttcttgctttgattaaatgcctgggaaattcttgctcgtgtgtgaaatccttaaggtcccatactagatgcctgactgtttctgagacttgttgcccttcacagttcacaacagctaggtctgtgtccaaaacatatctaccaagatcatgtacaatgtcatgtaacttgcaatgtggcatgcttccatcaaaagtaattagagagtcttgaaaaagggaacttcctatcaattcaataatgtactgattaccaacatctatttcttcactcaatttgttcgagttcagtagcccatgtgccatccaaaacatgattatgcatcttctgtaatattcgaagtccttaggaaatatggataaataggaaagacatggtttaagggcagctggaagagcattgtaacttaactttagcactggcattatatctctgtcaccttgtacaattttgcacaagtggtcttctttaacgcgtagccattgagtttcatcacgcatggtaaatagtagagaacccaatgattttattgccagtggtactccagcacacttcttcacaatggactctccaattttcaacaaccacggatatttattttcctcaccttgtctgaatgcaactctggtaaaaatttgcatgcactcatgaaaagggagtgcacccaccttgtacgggtctgaggtaccaaccatagatgcaacaacattttcgcgtgtagtaacaattatcacactaccccttgcaccacttgacaacaaattcctcagctctctccattcatttacatcacgagtccacagatcatccaataccaggaaataatttccattctgcagaattcccctgagcttattttgtaaatgttccaagtttagatgcttgcaactctcaccactggcagactcgattatatcttgtagtatatttttcagattaaatttattagagacacaggcccacatcatcttgctgaacctctccctgatttgttgatcatgatacaccatatttgctagttcagttttcccaatgcctccaagcccaagcagaggaagcacaaaaatatcatgatgttctgctgctcttagtatcttactaacaatctcatctctagcatcatcccttccaattatatcaggttgatacacaaaagaatatgattctctttctggttcttcagaacactgaccacccactgtccaatcggtcagtccaaagtcctttttactagcggctatttcgttaagcttttcatgaacttctcttattctgctgctccatttcttcttccttttgagcaattttcttctcaatttcaatcgagaaatatgtacacaattggtttgagtaaccacatctttgctaactctgcgcttcaaagtttcagttgacgcatcgtccaaaatgtcatctatgtcatacatgacatctttcagttttcgcagccattccttgagtgcactagaagtactctgcttcctctctgcgtctagaagaactccactaatagcttgcaacgaattctgtagcttccccagttcttgatgcacacttctgtctgatttaatccccatcaaaccgtgttcactaacaaacaaaattatttttccaataattgacacggcaaaacttgacagaagtacttcggccatagttgtaagaactgagccttctgaaaaaaagtaaaatatgtgacagacctgtggatgccatacaatataggccactcgataaggaaggaaaatgaatcagcacatgacttttaaggctaaatagtgaacttttgttagaaatgggtgatttcatagaaaaagatattatataagattcaagaacacttgcgttatatttgtaaagattaattgattgacacaaaaacaaatactaaaaaggaacttggtatcaaattaatagagaagaaatagagacccaagttgagtccaagaggtttctgaactttggtgatggtggtgtacatccacacctctcaccaattgatctgggcttagtccctatctgcatgccttatggcaaatatatactatgaactaaattacctgttacctgtgccatgtagctgctagtggtcaaaatttgttaggggatgatgactgttatattatgatccgaattagactggtaattccacttccaaatatgaagttctacttctagtccaattctggatgatgtagctcgtataatataacccttaagagacatagtgcaagacaatgctaaatataaagagcaaacaagttccatttaacatcctcaacatagtggttattattttgtaaacatcagcccccaaacgcacacaagggcacgaatttccttattgcatagtcacctaaaatcctgtatcactaaaccagaaattgcaattcaataaagcagaatctgattacagtagagctttactgaaacttctgttatatatgtatgaaaatcatgctctaatagtataccttttggtgtttgcaggtgctcatagtgcagttagccaaaagaaatatgatttagaaaatgaatgcctcaattacaagagaattaggtggtaaataatctaaattctccaattacaaatacaaaaaaagaaatactctaaaaaaactcagattcatcctcctccctcttccatgttgcttttcacctgggaacctagaatcctgcccctgtgagctgtgatatctttttgaggcatttccacaaacaggtcacaggcaatagaaaaatcctaaatggctttaacagcaaaggtaacaagaaaagcctaccagcaatacaatttacaggaatgatcgacttagagatagggagaaagatagcaagacggagagatgagagatcgatctcaccagtcaccagccctgaacccctcgcctgcttccgcagcctcgctgtcagcaatctccagagagaaacggaagaagattttcagggatcgagcgggcaggtgatgcagattggcctcgccgtggaagcctgatgccaaattgctccatcctctgatgtcaaatcgcgtaaaaattatatataaggaagagaattggcctacggtaagatgagaaaagccgagagcggacagcggtgggtttagcacaattctatgtgcgcatgcccttggtaagttggtatgtcgtaa
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| CDS seq | atggccgaagtacttctgtcaagttttgccgtgtcaattattggaaaaataattttgtttgttagtgaacacggtttgatggggattaaatcagacagaagtgtgcatcaagaactggggaagctacagaattcgttgcaagctattagtggagttcttctagacgcagagaggaagcagagtacttctagtgcactcaaggaatggctgcgaaaactgaaagatgtcatgtatgacatagatgacattttggacgatgcgtcaactgaaactttgaagcgcagagttagcaaagatgtggttactcaaaccaattgtgtacatatttctcgattgaaattgagaagaaaattgctcaaaaggaagaagaaatggagcagcagaataagagaagttcatgaaaagcttaacgaaatagccgctagtaaaaaggactttggactgaccgattggacagtgggtggtcagtgttctgaagaaccagaaagagaatcatattcttttgtgtatcaacctgatataattggaagggatgatgctagagatgagattgttagtaagatactaagagcagcagaacatcatgatatttttgtgcttcctctgcttgggcttggaggcattgggaaaactgaactagcaaatatggtgtatcatgatcaacaaatcagggagaggttcagcaagatgatgtgggcctgtgtctctaataaatttaatctgaaaaatatactacaagatataatcgagtctgccagtggtgagagttgcaagcatctaaacttggaacatttacaaaataagctcaggggaattctgcagaatggaaattatttcctggtattggatgatctgtggactcgtgatgtaaatgaatggagagagctgaggaatttgttgtcaagtggtgcaaggggtagtgtgataattgttactacacgcgaaaatgttgttgcatctatggttggtacctcagacccgtacaaggtgggtgcactcccttttcatgagtgcatgcaaatttttaccagagttgcattcagacaaggtgaggaaaataaatatccgtggttgttgaaaattggagagtccattgtgaagaagtgtgctggagtaccactggcaataaaatcattgggttctctactatttaccatgcgtgatgaaactcaatggctacgcgttaaagaagaccacttgtgcaaaattgtacaaggtgacagagatataatgccagtgctaaagttaagttacaatgctcttccagctgcccttaaaccatgtctttcctatttatccatatttcctaaggacttcgaatattacagaagatgcataatcatgttttggatggcacatgggctactgaactcgaacaaattgagtgaagaaatagatgttggtaatcagtacattattgaattgataggaagttccctttttcaagactctctaattacttttgatggaagcatgccacattgcaagttacatgacattgtacatgatcttggtagatatgttttggacacagacctagctgttgtgaactgtgaagggcaacaagtctcagaaacagtcaggcatctagtatgggaccttaaggatttcacacacgagcaagaatttcccaggcatttaatcaaagcaagaaaagctcgaacttttattagttcgtgtaatcatggttctttaagcaaaaaatttctggaagtgctgctgtccaagttattgcttctacgtgtattgattatatccggagttagaattgacgaactcccagattcaattggaaatttgaagcacttgaggtatcttgacctcacctggaacaaaaccataaaataccttcccaattccctatgcaagctcataaaccttcagacacttgatctttatcgaagtgaccaactaatcgagttgccgagagatgtaaacaagttaatcagcctcaggtacctgagtttgacatcgaagcaaaagcagttgccagaagcaggacttcgtggctgggcttcactaacatccctgcagcttcactcatgtagtgaactaacatcactgtcagaagggattggctcgttgactgccctacagatgctgtggatcagtgattgcccaaagcttccttctctcccagccagcatgacacacctctccagtctgcgagagctgttcatcgacaattgcccggagctggatttgatgcatccagaggaggccatggatgggctatggagtcttcgatcattgcagatcattggacttccaaagctagagcgtcttcctgacactctttgttctgcctcgggttctcttcggtatttattgattgagcaatgccccaatctaagggagcttccaagcttcatgcaagatctcactaaccatcagaggcaggggggtattcattaa
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| Protein seq | MAEVLLSSFAVSIIGKIILFVSEHGLMGIKSDRSVHQELGKLQNSLQAISGVLLDAERKQSTSSALKEWLRKLKDVMYDIDDILDDASTETLKRRVSKDVVTQTNCVHISRLKLRRKLLKRKKKWSSRIREVHEKLNEIAASKKDFGLTDWTVGGQCSEEPERESYSFVYQPDIIGRDDARDEIVSKILRAAEHHDIFVLPLLGLGGIGKTELANMVYHDQQIRERFSKMMWACVSNKFNLKNILQDIIESASGESCKHLNLEHLQNKLRGILQNGNYFLVLDDLWTRDVNEWRELRNLLSSGARGSVIIVTTRENVVASMVGTSDPYKVGALPFHECMQIFTRVAFRQGEENKYPWLLKIGESIVKKCAGVPLAIKSLGSLLFTMRDETQWLRVKEDHLCKIVQGDRDIMPVLKLSYNALPAALKPCLSYLSIFPKDFEYYRRCIIMFWMAHGLLNSNKLSEEIDVGNQYIIELIGSSLFQDSLITFDGSMPHCKLHDIVHDLGRYVLDTDLAVVNCEGQQVSETVRHLVWDLKDFTHEQEFPRHLIKARKARTFISSCNHGSLSKKFLEVLLSKLLLLRVLIISGVRIDELPDSIGNLKHLRYLDLTWNKTIKYLPNSLCKLINLQTLDLYRSDQLIELPRDVNKLISLRYLSLTSKQKQLPEAGLRGWASLTSLQLHSCSELTSLSEGIGSLTALQMLWISDCPKLPSLPASMTHLSSLRELFIDNCPELDLMHPEEAMDGLWSLRSLQIIGLPKLERLPDTLCSASGSLRYLLIEQCPNLRELPSFMQDLTNHQRQGGIH |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056750 | OsLiXu_Ung0056750.01 | ChrUN-Ctg427 | 91792 | 96382 | - | NAM | ||
| CDS seq | atggccgaagtacttctgtcaagttttgccgtgtcaattattggaaaaataattttgtttgttagtgaacacggtttgatggggattaaatcagacagaagtgtgcatcaagaactggggaagctacagaattcgttgcaagctattagtggagttcttctagacgcagagaggaagcagagtacttctagtgcactcaaggaatggctgcgaaaactgaaagatgtcatgtatgacatagatgacattttggacgatgcgtcaactgaaactttgaagcgcagagttagcaaagatgtggttactcaaaccaattgtgtacatatttctcgattgaaattgagaagaaaattgctcaaaaggaagaagaaatggagcagcagaataagagaagttcatgaaaagcttaacgaaatagccgctagtaaaaaggactttggactgaccgattggacagtgggtggtcagtgttctgaagaaccagaaagagaatcatattcttttgtgtatcaacctgatataattggaagggatgatgctagagatgagattgttagtaagatactaagagcagcagaacatcatgatatttttgtgcttcctctgcttgggcttggaggcattgggaaaactgaactagcaaatatggtgtatcatgatcaacaaatcagggagaggttcagcaagatgatgtgggcctgtgtctctaataaatttaatctgaaaaatatactacaagatataatcgagtctgccagtggtgagagttgcaagcatctaaacttggaacatttacaaaataagctcaggggaattctgcagaatggaaattatttcctggtattggatgatctgtggactcgtgatgtaaatgaatggagagagctgaggaatttgttgtcaagtggtgcaaggggtagtgtgataattgttactacacgcgaaaatgttgttgcatctatggttggtacctcagacccgtacaaggtgggtgcactcccttttcatgagtgcatgcaaatttttaccagagttgcattcagacaaggtgaggaaaataaatatccgtggttgttgaaaattggagagtccattgtgaagaagtgtgctggagtaccactggcaataaaatcattgggttctctactatttaccatgcgtgatgaaactcaatggctacgcgttaaagaagaccacttgtgcaaaattgtacaaggtgacagagatataatgccagtgctaaagttaagttacaatgctcttccagctgcccttaaaccatgtctttcctatttatccatatttcctaaggacttcgaatattacagaagatgcataatcatgttttggatggcacatgggctactgaactcgaacaaattgagtgaagaaatagatgttggtaatcagtacattattgaattgataggaagttccctttttcaagactctctaattacttttgatggaagcatgccacattgcaagttacatgacattgtacatgatcttggtagatatgttttggacacagacctagctgttgtgaactgtgaagggcaacaagtctcagaaacagtcaggcatctagtatgggaccttaaggatttcacacacgagcaagaatttcccaggcatttaatcaaagcaagaaaagctcgaacttttattagttcgtgtaatcatggttctttaagcaaaaaatttctggaagtgctgctgtccaagttattgcttctacgtgtattgattatatccggagttagaattgacgaactcccagattcaattggaaatttgaagcacttgaggtatcttgacctcacctggaacaaaaccataaaataccttcccaattccctatgcaagctcataaaccttcagacacttgatctttatcgaagtgaccaactaatcgagttgccgagagatgtaaacaagttaatcagcctcaggtacctgagtttgacatcgaagcaaaagcagttgccagaagcaggacttcgtggctgggcttcactaacatccctgcagcttcactcatgtagtgaactaacatcactgtcagaagggattggctcgttgactgccctacagatgctgtggatcagtgattgcccaaagcttccttctctcccagccagcatgacacacctctccagtctgcgagagctgttcatcgacaattgcccggagctggatttgatgcatccagaggaggccatggatgggctatggagtcttcgatcattgcagatcattggacttccaaagctagagcgtcttcctgacactctttgttctgcctcgggttctcttcggtatttattgattgagcaatgccccaatctaagggagcttccaagcttcatgcaagatctcactaaccatcagaggcaggggggtattcattaa
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| Protein seq | MAEVLLSSFAVSIIGKIILFVSEHGLMGIKSDRSVHQELGKLQNSLQAISGVLLDAERKQSTSSALKEWLRKLKDVMYDIDDILDDASTETLKRRVSKDVVTQTNCVHISRLKLRRKLLKRKKKWSSRIREVHEKLNEIAASKKDFGLTDWTVGGQCSEEPERESYSFVYQPDIIGRDDARDEIVSKILRAAEHHDIFVLPLLGLGGIGKTELANMVYHDQQIRERFSKMMWACVSNKFNLKNILQDIIESASGESCKHLNLEHLQNKLRGILQNGNYFLVLDDLWTRDVNEWRELRNLLSSGARGSVIIVTTRENVVASMVGTSDPYKVGALPFHECMQIFTRVAFRQGEENKYPWLLKIGESIVKKCAGVPLAIKSLGSLLFTMRDETQWLRVKEDHLCKIVQGDRDIMPVLKLSYNALPAALKPCLSYLSIFPKDFEYYRRCIIMFWMAHGLLNSNKLSEEIDVGNQYIIELIGSSLFQDSLITFDGSMPHCKLHDIVHDLGRYVLDTDLAVVNCEGQQVSETVRHLVWDLKDFTHEQEFPRHLIKARKARTFISSCNHGSLSKKFLEVLLSKLLLLRVLIISGVRIDELPDSIGNLKHLRYLDLTWNKTIKYLPNSLCKLINLQTLDLYRSDQLIELPRDVNKLISLRYLSLTSKQKQLPEAGLRGWASLTSLQLHSCSELTSLSEGIGSLTALQMLWISDCPKLPSLPASMTHLSSLRELFIDNCPELDLMHPEEAMDGLWSLRSLQIIGLPKLERLPDTLCSASGSLRYLLIEQCPNLRELPSFMQDLTNHQRQGGIH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.143032 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0161400 | SBH | 0.233407 | 0.0 | 0.285237 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07400 | RBH | 0.150264 | 0.0 | 0.069901 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0161400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003310 | RBH | 0.0 | 2.038005 | 0.591060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003520 | SBH | 0.749586 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003830 | SBH | 0.126337 | 0.054133 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003210 | RBH | 0.0 | 4.205642 | 0.512956 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0064600 | RBH | 0.151932 | 1.1586795 | 0.2345075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003430 | RBH | 0.0 | 0.0 | 0.191434 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0072400 | RBH | 0.2205365 | 0.4157265 | 1.611987 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003260 | RBH | 0.032501 | 0.006608 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003390 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003480 | RBH | 0.447288 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003700 | SBH | 0.340562 | 0.276391 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003440 | RBH | 0.147638 | 1.228037 | 0.000000 |
