Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0055530 | OGI:10008110 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg422:1573910-1575182 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttctcccacaaacaaagcatcataccctgagatggagctcatcgtatcatctatcacaggtgatctcaccagtcgattaatctcctttctgatgaacaagtttttagataatctctactccggggaaaaggtaaaaaggctggagcaactccttcaaagagttcacatggttgtcgaggaggcagatgggcgatacatcaccaaccgttgtatgctcacacatctgaagacgatagtcgcagcgatgtacagtggctaccatgtgctggataccatcaagtacatgaagaacaacaaaggtgcgaatgatctggtaaataactcatctgccttgtcttttgccactcctctcaaacgatctcgcactactactatttgtcctgaaacaaagaacaaattcagtatggagttacaaggcgcactgaaaaatatagagactgtaattggtgatatcaatgagtttgtcatccttctgaccggatgtgagcgcatgtcccataggccctatgatacctatctttacatcgacaatttcatgtttggtcgacatgtggaaaagcaacatctaattaacttcttgctggagaacaacaatattggtcctccacctctgctaccaattatcggtggtcgtggagttgggaagaaaacacttgttgcacatgtatgcaacgatgatagggttcgatctcatttcttttttattttccatatcaatggagagaaccttggggaaattaccgaaaataaaaatatgtcagaaaggacattggtaattgttgagtttgtttcagatgtagatgacaacgactggggaacatttcattcatctcttatcagccttaacagaggaaacaaagtgataatcttgactagaattaagaaattggagagatttggaactgtcaggcccattactcttgacagaatggtgcatgaggagtacatatacctattgaagacgctcacatttggaagcgcaaaccctatggactatccacaacttattccaatagtggaagaattcgcagtgctattaggaggcagactcatcccagccaacatacttggatatgtattgagaaataatttgaatgttcatttctggctttccagattgaaagggatccgatttgtagtcaagaagaacttgtctatgtccggtagccatccaaacgaactttttgatcaaggccatccagcacatttgacagactacatattgtaccctgctagcacctcaactgattctcccaagaacgatttaccttag
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| CDS seq | atggagctcatcgtatcatctatcacaggtgatctcaccagtcgattaatctcctttctgatgaacaagtttttagataatctctactccggggaaaaggtaaaaaggctggagcaactccttcaaagagttcacatggttgtcgaggaggcagatgggcgatacatcaccaaccgttgtatgctcacacatctgaagacgatagtcgcagcgatgtacagtggctaccatgtgctggataccatcaagtacatgaagaacaacaaaggtgcgaatgatctggtaaataactcatctgccttgtcttttgccactcctctcaaacgatctcgcactactactatttgtcctgaaacaaagaacaaattcagtatggagttacaaggcgcactgaaaaatatagagactgtaattggtgatatcaatgagtttgtcatccttctgaccggatgtgagcgcatgtcccataggccctatgatacctatctttacatcgacaatttcatgtttggtcgacatgtggaaaagcaacatctaattaacttcttgctggagaacaacaatattggtcctccacctctgctaccaattatcggtggtcgtggagttgggaagaaaacacttgttgcacatgtatgcaacgatgatagggttcgatctcatttcttttttattttccatatcaatggagagaaccttggggaaattaccgaaaataaaaatatgtcagaaaggacattggtaattgttgagtttgtttcagatgtagatgacaacgactggggaacatttcattcatctcttatcagccttaacagaggaaacaaagtgataatcttgactagaattaagaaattggagagatttggaactgtcaggcccattactcttgacagaatggtgcatgaggagtacatatacctattgaagacgctcacatttggaagcgcaaaccctatggactatccacaacttattccaatagtggaagaattcgcagtgctattaggaggcagactcatcccagccaacatacttggatatgtattgagaaataatttgaatgttcatttctggctttccagattgaaagggatccgatttgtagtcaagaagaacttgtctatgtccggtagccatccaaacgaactttttgatcaaggccatccagcacatttgacagactacatattgtaccctgctagcacctcaactgattctcccaagaacgatttaccttag
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| Protein seq | MELIVSSITGDLTSRLISFLMNKFLDNLYSGEKVKRLEQLLQRVHMVVEEADGRYITNRCMLTHLKTIVAAMYSGYHVLDTIKYMKNNKGANDLVNNSSALSFATPLKRSRTTTICPETKNKFSMELQGALKNIETVIGDINEFVILLTGCERMSHRPYDTYLYIDNFMFGRHVEKQHLINFLLENNNIGPPPLLPIIGGRGVGKKTLVAHVCNDDRVRSHFFFIFHINGENLGEITENKNMSERTLVIVEFVSDVDDNDWGTFHSSLISLNRGNKVIILTRIKKLERFGTVRPITLDRMVHEEYIYLLKTLTFGSANPMDYPQLIPIVEEFAVLLGGRLIPANILGYVLRNNLNVHFWLSRLKGIRFVVKKNLSMSGSHPNELFDQGHPAHLTDYILYPASTSTDSPKNDLP |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0055530 | OsLiXu_Ung0055530.01 | ChrUN-Ctg422 | 1573910 | 1575182 | + | NAM | ||
| CDS seq | atggagctcatcgtatcatctatcacaggtgatctcaccagtcgattaatctcctttctgatgaacaagtttttagataatctctactccggggaaaaggtaaaaaggctggagcaactccttcaaagagttcacatggttgtcgaggaggcagatgggcgatacatcaccaaccgttgtatgctcacacatctgaagacgatagtcgcagcgatgtacagtggctaccatgtgctggataccatcaagtacatgaagaacaacaaaggtgcgaatgatctggtaaataactcatctgccttgtcttttgccactcctctcaaacgatctcgcactactactatttgtcctgaaacaaagaacaaattcagtatggagttacaaggcgcactgaaaaatatagagactgtaattggtgatatcaatgagtttgtcatccttctgaccggatgtgagcgcatgtcccataggccctatgatacctatctttacatcgacaatttcatgtttggtcgacatgtggaaaagcaacatctaattaacttcttgctggagaacaacaatattggtcctccacctctgctaccaattatcggtggtcgtggagttgggaagaaaacacttgttgcacatgtatgcaacgatgatagggttcgatctcatttcttttttattttccatatcaatggagagaaccttggggaaattaccgaaaataaaaatatgtcagaaaggacattggtaattgttgagtttgtttcagatgtagatgacaacgactggggaacatttcattcatctcttatcagccttaacagaggaaacaaagtgataatcttgactagaattaagaaattggagagatttggaactgtcaggcccattactcttgacagaatggtgcatgaggagtacatatacctattgaagacgctcacatttggaagcgcaaaccctatggactatccacaacttattccaatagtggaagaattcgcagtgctattaggaggcagactcatcccagccaacatacttggatatgtattgagaaataatttgaatgttcatttctggctttccagattgaaagggatccgatttgtagtcaagaagaacttgtctatgtccggtagccatccaaacgaactttttgatcaaggccatccagcacatttgacagactacatattgtaccctgctagcacctcaactgattctcccaagaacgatttaccttag
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| Protein seq | MELIVSSITGDLTSRLISFLMNKFLDNLYSGEKVKRLEQLLQRVHMVVEEADGRYITNRCMLTHLKTIVAAMYSGYHVLDTIKYMKNNKGANDLVNNSSALSFATPLKRSRTTTICPETKNKFSMELQGALKNIETVIGDINEFVILLTGCERMSHRPYDTYLYIDNFMFGRHVEKQHLINFLLENNNIGPPPLLPIIGGRGVGKKTLVAHVCNDDRVRSHFFFIFHINGENLGEITENKNMSERTLVIVEFVSDVDDNDWGTFHSSLISLNRGNKVIILTRIKKLERFGTVRPITLDRMVHEEYIYLLKTLTFGSANPMDYPQLIPIVEEFAVLLGGRLIPANILGYVLRNNLNVHFWLSRLKGIRFVVKKNLSMSGSHPNELFDQGHPAHLTDYILYPASTSTDSPKNDLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.144796 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0134500 | SBH | 1.078637 | 0.625840 | 0.668965 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04510 | SBH | 0.311292 | 0.318033 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0134500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001730 | SBH | 0.0 | 1.031502 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001710 | SBH | 0.000000 | 0.0 | 0.136475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001680 | RBH | 0.0 | 0.0 | 0.260259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001640 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001650 | SBH | 0.362659 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0038000 | SBH | 0.055783 | 0.1966115 | 0.001675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001790 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0042200 | SBH | 1.153508 | 0.4686695 | 0.194644 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001680 | SBH | 0.053010 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001660 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001730 | SBH | 0.0 | 0.0 | 0.122930 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001610 | SBH | 0.0 | 2.513918 | 0.0 |
