Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0042980 | OGI:99044610 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg316:212661-214581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagatgcacagataactcccgctggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctgggcagagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaacaacctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcagacgtccagcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattcagcacagccttgggtgaaacatttagcagagttgggtccacgggaagcttaacaatgaatgtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgagagcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttgggcagaaagctgtacttcatgatggggatgggttcctccttcgatggcgtccggacatggaacatcccattctcgaggttgctcaacacagtgctctgcaacgcggccttcttcattccagatgtgccctcaagacgaaatgagaactctgtctccttaccagccgccttctttggtggcaacgttcgcagaaagattgtacccttcaaaccaacccgtgcaagaatagactccttaaattctgcattgatctcctccacgatgtatagctcaggggctgtcatctcagtgctctttgtcaccaacaagttctccagcggggtaccaccaggtgcatttggtccctgtccagcactagtggctagcagctcaagaccagtgatgctcttatccttatggtccttctttgttgtggtaacaaactctgaagcatccaatccaccccaaacggcgcattgaacccttcaaatgcctcggccagtgaagcctcctcattgccaactcaattccaccatagtcaccctcaaacccttcaactccaataaatgttggcttagtcgcctcagctggtggcaaggtcgtgacctccaacccagcaagcgcagcggcgggatcagcaaccacaatggcggtctccttgttcttcttgaacccaccaaccaacgcctcctcaggcttgttaacaagttcactggctgcaaacggatccttctccacgggagctgcctcctccggtggaggctcatccccagtagccgcagcagccgcaggcgcaatgttagacgcggagaactcatcaccagcagcaagggtctcctgggggagctcgaacgaggcgcctgtgaagccatcgcgagcggcatggcgatcgtgggcgaggtgctcgacggcgggccagggatcagcgccacgagctttcgcctcggcgtcgggggaggaattcaccatgcgagcgaggttgtcgccatggatggtggcgaggatctgggagaggcggacggagccgacgccgtggaggacgaggtcgagggcgaggtagacctccgggtacttgcggtgcaccttctccggcgtgacgtcgacgccgcggcacgcggcgacgacgacggagacggcctggttgacggcgtcggcgacggcgaaggcgtggacggcgggggaggcgtggtcggaggaggtggtgacgccgagcacgtagatggagttgacgaggcggtacacgacgcggtactgcgactccaccccgaccacgagctgccccgacccggcggcgagcgggtcgtcgccgatggcctcgagcgtcgccgcggccgcggcggccgacgacgacgacaactgctgctgcttcccacgggcgaggtggaggcgggcgaggcggaaggaggagacggcggcgagggcgcgggagacggggaaccaggagcgggtctggaggaggatgtccgggccgttcaccggctggagggagatcgcgaggcatgccat
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| CDS seq | atggcatgcctcgcgatctccctccagccggtgaacggcccggacatcctcctccagacccgctcctggttccccgtctcccgcgccctcgccgccgtctcctccttccgcctcgcccgcctccacctcgcccgtgggaagcagcagcagttgtcgtcgtcgtcggccgccgcggccgcggcgacgctcgaggccatcggcgacgacccgctcgccgccgggtcggggcagctcgtggtcggggtggagtcgcagtaccgcgtcgtgtaccgcctcgtcaactccatctacgtgctcggcgtcaccacctcctccgaccacgcctcccccgccgtccacgccttcgccgtcgccgacgccgtcaaccaggccgtctccgtcgtcgtcgccgcgtgccgcggcgtcgacgtcacgccggagaaggtgcaccgcaagtacccggaggtctacctcgccctcgacctcgtcctccacggcgtcggctccgtccgcctctcccagatcctcgccaccatccatggcgacaacctcgctcgcatggtgaattcctcccccgacgccgaggcgaaagctcgtggcgctgatccctggcccgccgtcgagcacctcgcccacgatcgccatgccgctcgcgatggcttcacaggcgcctcgttcgagctcccccaggagacccttgctgctggtgatgagttctccgcgtctaacattgcgcctgcggctgctgcggctactggggatgagcctccaccggaggaggcagctcccgtggagaaggatccgtttgcagccagtgaacttgttaacaagcctgaggaggcgttggttggtgggttcaagaagaacaaggagaccgccattgtggttgctgatcccgccgctgcgcttgctgggttggaggtcacgaccttgccaccagctgaggcgactaagccaacatttattggagttgaagggtttgaggagtttgttaccacaacaaagaaggaccataaggataagagcatcactggtcttgagctgctagccactagtgctggacagggaccaaatgcacctggtggtaccccgctggagaacttgttggtgacaaagagcactgagatgacagcccctgagctatacatcgtggaggagatcaatgcagaatttaaggagtctattcttgcacgggttggtttgaagggtacaatctttctgcgaacgttgccaccaaagaaggcggctggtaaggagacagagttctcatttcgtcttgagggcacatctggaatgaagaaggccgcgttgcagagcactgtgttgagcaacctcgagaatgggatgttccatgtccggacgccatcgaaggaggaacccatccccatcatgaagtacagctttctgcccaagcactcacctctccctttgaggatgcgccttgtgaagcgacatagcggaacattgctctcagtgatgattcaatacgcatcaaacccaatgttgccacagccgctgagcaatgttacattcattgttaagcttcccgtggacccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagagagggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtctgagggctcggatgcctgtagatcaggactcaaaggatggtgagctagaggttgttgggatggtgaagtttgcttaccaagggccatttacattgtctggcatcaaactctgcccagccactgatggcacggctcagtttaatgaggctggccacaccttctccagcgggagttatctgtgcatctaa
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| Protein seq | MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLSSSSAAAAAATLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTSSDHASPAVHAFAVADAVNQAVSVVVAACRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDNLARMVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQETLAAGDEFSASNIAPAAAAATGDEPPPEEAAPVEKDPFAASELVNKPEEALVGGFKKNKETAIVVADPAAALAGLEVTTLPPAEATKPTFIGVEGFEEFVTTTKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMTAPELYIVEEINAEFKESILARVGLKGTIFLRTLPPKKAAGKETEFSFRLEGTSGMKKAALQSTVLSNLENGMFHVRTPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQYASNPMLPQPLSNVTFIVKLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELEVVGMVKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLCI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0042980 | OsLiXu_Ung0042980.01 | ChrUN-Ctg316 | 212661 | 214581 | - | NAM | ||
| CDS seq | atggcatgcctcgcgatctccctccagccggtgaacggcccggacatcctcctccagacccgctcctggttccccgtctcccgcgccctcgccgccgtctcctccttccgcctcgcccgcctccacctcgcccgtgggaagcagcagcagttgtcgtcgtcgtcggccgccgcggccgcggcgacgctcgaggccatcggcgacgacccgctcgccgccgggtcggggcagctcgtggtcggggtggagtcgcagtaccgcgtcgtgtaccgcctcgtcaactccatctacgtgctcggcgtcaccacctcctccgaccacgcctcccccgccgtccacgccttcgccgtcgccgacgccgtcaaccaggccgtctccgtcgtcgtcgccgcgtgccgcggcgtcgacgtcacgccggagaaggtgcaccgcaagtacccggaggtctacctcgccctcgacctcgtcctccacggcgtcggctccgtccgcctctcccagatcctcgccaccatccatggcgacaacctcgctcgcatggtgaattcctcccccgacgccgaggcgaaagctcgtggcgctgatccctggcccgccgtcgagcacctcgcccacgatcgccatgccgctcgcgatggcttcacaggcgcctcgttcgagctcccccaggagacccttgctgctggtgatgagttctccgcgtctaacattgcgcctgcggctgctgcggctactggggatgagcctccaccggaggaggcagctcccgtggagaaggatccgtttgcagccagtgaacttgttaacaagcctgaggaggcgttggttggtgggttcaagaagaacaaggagaccgccattgtggttgctgatcccgccgctgcgcttgctgggttggaggtcacgaccttgccaccagctgaggcgactaagccaacatttattggagttgaagggtttgaggagtttgttaccacaacaaagaaggaccataaggataagagcatcactggtcttgagctgctagccactagtgctggacagggaccaaatgcacctggtggtaccccgctggagaacttgttggtgacaaagagcactgagatgacagcccctgagctatacatcgtggaggagatcaatgcagaatttaaggagtctattcttgcacgggttggtttgaagggtacaatctttctgcgaacgttgccaccaaagaaggcggctggtaaggagacagagttctcatttcgtcttgagggcacatctggaatgaagaaggccgcgttgcagagcactgtgttgagcaacctcgagaatgggatgttccatgtccggacgccatcgaaggaggaacccatccccatcatgaagtacagctttctgcccaagcactcacctctccctttgaggatgcgccttgtgaagcgacatagcggaacattgctctcagtgatgattcaatacgcatcaaacccaatgttgccacagccgctgagcaatgttacattcattgttaagcttcccgtggacccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagagagggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtctgagggctcggatgcctgtagatcaggactcaaaggatggtgagctagaggttgttgggatggtgaagtttgcttaccaagggccatttacattgtctggcatcaaactctgcccagccactgatggcacggctcagtttaatgaggctggccacaccttctccagcgggagttatctgtgcatctaa
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| Protein seq | MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLSSSSAAAAAATLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTSSDHASPAVHAFAVADAVNQAVSVVVAACRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDNLARMVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQETLAAGDEFSASNIAPAAAAATGDEPPPEEAAPVEKDPFAASELVNKPEEALVGGFKKNKETAIVVADPAAALAGLEVTTLPPAEATKPTFIGVEGFEEFVTTTKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMTAPELYIVEEINAEFKESILARVGLKGTIFLRTLPPKKAAGKETEFSFRLEGTSGMKKAALQSTVLSNLENGMFHVRTPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQYASNPMLPQPLSNVTFIVKLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELEVVGMVKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLCI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0243900 | SBH | 3.401847 | 2.308940 | 6.950071 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14620 | SBH | 2.171678 | 1.464370 | 1.689484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0243900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008350 | SBH | 0.751984 | 16.745945 | 9.814627 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008410 | SBH | 0.223915 | 5.582906 | 2.342755 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008500 | SBH | 1.458778 | 27.891726 | 24.602667 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008480 | SBH | 0.228972 | 0.838213 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008330 | SBH | 5.753333 | 38.434319 | 13.525705 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008330 | SBH | 0.333097 | 2.656051 | 1.357057 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0132500 | SBH | 5.653933 | 8.6566385 | 13.0471805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007960 | SBH | 0.114268 | 0.314479 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008050 | SBH | 0.251310 | 18.355740 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007870 | SBH | 2.166188 | 29.021410 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008570 | RBH | 0.291526 | 0.524867 | 0.617993 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008040 | SBH | 0.427077 | 15.199835 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008270 | SBH | 0.389821 | 8.906796 | 5.975908 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008130 | SBH | 0.874018 | 17.422680 | 8.653957 |
