Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLiXu_Ung0040450 | OGI:99042530 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg297:85329-87589 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ctagatcattctgtcagtgcggtccgcttgatgatgcacctgcaagtaaaccaatattagcatattatagtgttaagtaaggtctcaaataatgtgagaaaactatcctaacaaaaaggtacagttacaaaccggcttgattcttatctcgtgttgaacgatgtgcttgatgtcccagtcgtcgaccttgcatttcatctatatacattgggattctgttgtgtctccgtcgaccccgttgtattaacctcttgtcaggcataataactggaccaatatatggtggccactcattttgatttccatatggatgaaattgacctgcccaagtgcttgccagtgttgacgaagagtaatatggatggataaattgattctcattgaaatttctatccttgcaaacagcaagggcatgagcgcatggtattccagtgaggtttggctttaggcattcgcacataggaggagtatcattgtgtataattactttatacttgaaatctcttcgaacatatgcagtatgatttccttgcactactgcaactcgctcacggtcaaccttgacctcatactcatcaccttcatcaccataagaagtcacgtgcatggatccagccttattccctcgctttactaacaaattctcaacccgatgggaccacattttctctgaatctgcaagttcaagagcagattttcttctatcaacaaaccattctaagcatttattaaatgtttcctccactattgctgtcacaggtaatctccttgagtacttgaacacattatttaatgattcagaaccattacttgtcattataccccaacggtaaccaccatccatgcattgaaacacctctcaggtttctcaggctcatctttatcctcctgtcgatattttccaacactttttagataatcaattgcatttggacaactttgtgtaattgcatccatgccttctacaaacctgcgtggtttcttcttctttacagcccacttgaatgtttttatcacatcatcatttttacatcgcttgtacagattctcagcaatacgttgggaacaaaatcgatgcacacactcaccaccaatttcgttccatccgatatgtggctgcttgaatacccactttatagccttgtgacgatcagaacaacacacatgaaattaccaaaaccaatcacctcttttcttagccatctcataaaccaaccccaattgtcactatcctccttttccacgattgcaaaagcaagtggtagtaacctattttcagcatcatatccacatgctatcaacaacctgccccgatacctaccagataaaaaagaagcatccacactaattaccggtcgaaggtatgggacagattcaatgcatggcccaaaagcccaggccaaacatttgaatgattggtgtccttcaggagatgtaggatttgatagaagttgatattttgtacccggattagatgctttcattgcctccaacaacggtgtgacaagtgcatatgattcttcccaactaccaaacaattgaactatggccaactctcgaccacgccacaacttgttgtactttggtttcacatttttatatctttgtcgaaccaactgacgtatgcttaatatactcaactccaaattctcctttagatcatcacgtatcacatcagcaatgaccgctgctgttagctgtgcatgatcaaatcggtcagcaggtgcacgacatgtgtggggaaattggcaagtttgtattttccaacttgaaccaatttttgttgtttttgcatatagcttccacttgcaagtactatctttgcacttgaaatctagtcttgatttgttgcttgtagatacccttacttccatattattactaatgtgaaattcatttactgcaaactgtaggtgttgcttggagtaaaaaattcgacctttggccaatggactctcaaagtgtctctttgaaccaaagaaacaatcatcagctcttgtctgacgcaacacagaaatgtcatgaaaggcacttacggggtgcttaccagacctacccatgagtggctgcgattttgcagaattaaccaatgcaatactatcattcatattctcttcgtcttcgctaccctcctccacatcttcctggtcttcatcctcgtcaatattgccttcattgtctgtctcttctccaacataagcctcctcttcaacatttgtttgcaccacattcctagcattatgaccatcaagggaaggcat
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CDS seq | atgccttcccttgatggtcataatgctaggaatgtggtgcaaacaaatgttgaagaggaggcttatgttggagaagagacagacaatgaaggcaatattgacgaggatgaagaccaggaagatgtggaggagggtagcgaagacgaagagaatatgaatgatagtattgcattggttaattctgcaaaatcgcagccactcatgggtaggtctggtaagcaccccgtaagtgcctttcatgacatttctgtgttgcgtcagacaagagctgatgattgtttctttggttcaaagagacactttgagagtccattggccaaaggtcgaattttttactccaagcaacacctacagtttgcagtaaatgaatttcacattagtaataatatggaagtaagggtatctacaagcaacaaatcaagactagatttcaagtgcaaagatagtacttgcaagtggaagctatatgcaaaaacaacaaaaattggttcaagttggaaaatacaaacttgccaatttccccacacatgtcgtgcacctgctgaccgatttgatcatgcacagctaacagcagcggtcattgctgatgtgatacgtgatgatctaaaggagaatttggagttgagtatattaagcatacgtcagttgccacatatcggatggaacgaaattggtggtgagtgtgtgcatcgattttgttcccaacgtattgctgagaatctgtacaagcgatgtaaaaatgatgatgtgataaaaacattcaagtgggctgtaaagaagaagaaaccacgcaggtttgtagaaggcatggatgcaattacacaaagttgtccaaatgcaattgattatctaaaaagtgttggaaaatatcgacaggaggataaagatgagcctgagaaacctgagaggagattacctgtgacagcaatagtggaggaaacatttaataaatgcttagaatggtttgttgatagaagaaaatctgctcttgaacttgcagattcagagaaaatgtggtcccatcgggttgagaatttgttagtaaagcgagggaataaggctggatccatgcacgtgacttcttatggtgatgaaggtgatgagtatgaggtcaaggttgaccgtgagcgagttgcagtagtgcaaggaaatcatactgcatatgttcgaagagatttcaagtataaagtaattatacacaatgatactcctcctatgtgcgaatgcctaaagccaaacctcactggaataccatgcgctcatgcccttgctgtgcatcatcaagcggaccgcactgacagaatgatctag
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Protein seq | MPSLDGHNARNVVQTNVEEEAYVGEETDNEGNIDEDEDQEDVEEGSEDEENMNDSIALVNSAKSQPLMGRSGKHPVSAFHDISVLRQTRADDCFFGSKRHFESPLAKGRIFYSKQHLQFAVNEFHISNNMEVRVSTSNKSRLDFKCKDSTCKWKLYAKTTKIGSSWKIQTCQFPHTCRAPADRFDHAQLTAAVIADVIRDDLKENLELSILSIRQLPHIGWNEIGGECVHRFCSQRIAENLYKRCKNDDVIKTFKWAVKKKKPRRFVEGMDAITQSCPNAIDYLKSVGKYRQEDKDEPEKPERRLPVTAIVEETFNKCLEWFVDRRKSALELADSEKMWSHRVENLLVKRGNKAGSMHVTSYGDEGDEYEVKVDRERVAVVQGNHTAYVRRDFKYKVIIHNDTPPMCECLKPNLTGIPCAHALAVHHQADRTDRMI |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLiXu_Ung0040450 | OsLiXu_Ung0040450.01 | ChrUN-Ctg297 | 85329 | 87589 | - | NAM | ||
CDS seq | atgccttcccttgatggtcataatgctaggaatgtggtgcaaacaaatgttgaagaggaggcttatgttggagaagagacagacaatgaaggcaatattgacgaggatgaagaccaggaagatgtggaggagggtagcgaagacgaagagaatatgaatgatagtattgcattggttaattctgcaaaatcgcagccactcatgggtaggtctggtaagcaccccgtaagtgcctttcatgacatttctgtgttgcgtcagacaagagctgatgattgtttctttggttcaaagagacactttgagagtccattggccaaaggtcgaattttttactccaagcaacacctacagtttgcagtaaatgaatttcacattagtaataatatggaagtaagggtatctacaagcaacaaatcaagactagatttcaagtgcaaagatagtacttgcaagtggaagctatatgcaaaaacaacaaaaattggttcaagttggaaaatacaaacttgccaatttccccacacatgtcgtgcacctgctgaccgatttgatcatgcacagctaacagcagcggtcattgctgatgtgatacgtgatgatctaaaggagaatttggagttgagtatattaagcatacgtcagttgccacatatcggatggaacgaaattggtggtgagtgtgtgcatcgattttgttcccaacgtattgctgagaatctgtacaagcgatgtaaaaatgatgatgtgataaaaacattcaagtgggctgtaaagaagaagaaaccacgcaggtttgtagaaggcatggatgcaattacacaaagttgtccaaatgcaattgattatctaaaaagtgttggaaaatatcgacaggaggataaagatgagcctgagaaacctgagaggagattacctgtgacagcaatagtggaggaaacatttaataaatgcttagaatggtttgttgatagaagaaaatctgctcttgaacttgcagattcagagaaaatgtggtcccatcgggttgagaatttgttagtaaagcgagggaataaggctggatccatgcacgtgacttcttatggtgatgaaggtgatgagtatgaggtcaaggttgaccgtgagcgagttgcagtagtgcaaggaaatcatactgcatatgttcgaagagatttcaagtataaagtaattatacacaatgatactcctcctatgtgcgaatgcctaaagccaaacctcactggaataccatgcgctcatgcccttgctgtgcatcatcaagcggaccgcactgacagaatgatctag
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Protein seq | MPSLDGHNARNVVQTNVEEEAYVGEETDNEGNIDEDEDQEDVEEGSEDEENMNDSIALVNSAKSQPLMGRSGKHPVSAFHDISVLRQTRADDCFFGSKRHFESPLAKGRIFYSKQHLQFAVNEFHISNNMEVRVSTSNKSRLDFKCKDSTCKWKLYAKTTKIGSSWKIQTCQFPHTCRAPADRFDHAQLTAAVIADVIRDDLKENLELSILSIRQLPHIGWNEIGGECVHRFCSQRIAENLYKRCKNDDVIKTFKWAVKKKKPRRFVEGMDAITQSCPNAIDYLKSVGKYRQEDKDEPEKPERRLPVTAIVEETFNKCLEWFVDRRKSALELADSEKMWSHRVENLLVKRGNKAGSMHVTSYGDEGDEYEVKVDRERVAVVQGNHTAYVRRDFKYKVIIHNDTPPMCECLKPNLTGIPCAHALAVHHQADRTDRMI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46650 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026500 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026550 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026370 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026130 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026380 | SBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0452900 | SBH | 0 | 0 | 0.018343 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026870 | SBH | 0.0 | 0.0 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0465500 | SBH | 0 | 0 | 0.004451 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026140 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026580 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026230 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026640 | RBH | 0.0 | 0.000000 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026160 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026280 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026070 | SBH | 0.0 | 0.0 | 0.0 |