Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0040100 | OGI:99042230 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg295:275986-278477 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctgcggttcccaaatagcaaacacgtcttttggcgtcagtttattctaaactcatgcatgtttgctgcaatagtgatgctggttctcatgtttgatccagactctcgattagagatgatcgtgatcgatatatgtgctgcaatcatactgtcatttggcaacttacatatcccagcagcactcgtgcgtgtcagcctcgcggggtatcgccttgcagaacataactacttcggtgttgatgaccaaaaaaattttggtgaatctctaaccatcttctatagcatggtgcttggccaaggaatactttacatcgttgcaggcatactggaggtcttctcgttcatccctcggagaaccctcgtccgccgtggtggattcacaggccaatggggagttgaatctgtcaatctgtactacacatacgccttcgagaaaaacatggaaggaggtgtatttgctgcaaagaggatcagcctcagcaactttgccatggattctataaattctgacttgtccaagaaacagctgtatgggatccggatgatgcacatttttctgcagagagatccgaccagggcacagctactggagaaactgaccacttcaacgcagaccatggcaaggttaatcagcatgctgggctggactagcagaaatgatcatacaactatcaggttatatgccgccaaggtaactgccgagcttgcaaagagcctccgagttgtaactgtccctgggacgatgtaccttgtttctacactcctggatactgacagaaaaccaaaaagaagacacccacttctggatgaagatgatgatcgagatcctttatttgttgatacagtagaaagtcaggagaaaagccaggatgcagctggtgatcaagggcaaaaacaagggtcagctggggacactgatatcatgctgaaaacaccaacccgatcaacgcacttgaacaacccaagatccacatacaaatgttgggaggggatatcagagtgctagtcaattcccaaggagcaaccactgacagacgatgatcttcttcctgcactaggcatgtcaattgtttatagccttgctggttgtgatcaaaataactctgtggaaatcgacagagtaactgacctgatccccaaaatcattggattcacaagcttcacaagtgcaacagtgaattccgaagaacagaaggttctcttaaagtcatcactgaaggtgttgcagaggctcacaagcattgaaggagaaattggcataacactaaggcacaagatatcaaaacatcccttcctgttgagaaaccttgcagagatcttgggtgacaacagcataacaccagaattaaggaagctcgtggcagaaatcctcagaaatcttgccattgacagagatgcaaggcaggagattgggcaaatacaggtgctcattaccaggctgatgaaggcattcctcaattgcaacggaccatctagtacaaatgctgattgcttgctgccaaaggtcgctgggcaagcattggcaatgctagcatcagaaaatgtggataactgcttggttatgtcgaaggaaccagagttcattaacaaactaagaaatatgatcctaatccatgatgataataaatacatatatgtggcagcaagcttgttacgtaatctatgcatgcatgctcaacccgagctcatggaatcagacctaaagggactatctcacatcttgccagcggtaagccctgataatcttggtgtatagcattattagaggtgtttagcatgctatatcatttgtacatttggtatctgttagttattgtcaaaatttatcttttctttttttttcttttgtaaaagttgacatctatttactacttcctccgtttcatattataagactttctagttaatgaatcatctatataaatatgggcaatgctagaaagtcttataacctgaaacggaggtagtactaaactatataagtataactacagtttgtccaactatgtttatcatgctacatgacattgttgattccactacaggtgttggaaagaataatggatgctgaaggaccagaactagaaatcctcattggacttagttcacagatatgcaaagtccttcctaaagaattttcccaagaactagagcacagacagattaagcgaagattcattgagaggctagtggacttactgaatgcaaacatgaaaccaagtgctcattgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaataccagatgatggacgcactgtcaattgtagaattgacgtcctcaagggctgagaactacatggttttcttgggtgacacaggcttcatggaatgcagaaaacctctcttggctctagtggacaggacaaaagaactgatgggtcgtcagtggctgcaaggcatcaacagtgcctactga
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| CDS seq | atgtttgctgcaatagtgatgctggttctcatgtttgatccagactctcgattagagatgatcgtgatcgatatatgtgctgcaatcatactgtcatttggcaacttacatatcccagcagcactcgtgcgtgtcagcctcgcggggtatcgccttgcagaacataactacttcggtgttgatgaccaaaaaaattttggtgaatctctaaccatcttctatagcatggtgcttggccaaggaatactttacatcgttgcaggcatactggaggtcttctcgttcatccctcggagaaccctcgtccgccgtggtggattcacaggccaatggggagttgaatctgtcaatctgtactacacatacgccttcgagaaaaacatggaaggaggtgtatttgctgcaaagaggatcagcctcagcaactttgccatggattctataaattctgacttgtccaagaaacagctgtatgggatccggatgatgcacatttttctgcagagagatccgaccagggcacagctactggagaaactgaccacttcaacgcagaccatggcaaggttaatcagcatgctgggctggactagcagaaatgatcatacaactatcaggttatatgccgccaaggtaactgccgagcttgcaaagagcctccgagttgtaactgtccctgggacgatgtaccttgtttctacactcctggatactgacagaaaaccaaaaagaagacacccacttctggatgaagatgatgatcgagatcctttatttgttgatacagtagaaagtcaggagaaaagccaggatgcagctggtgatcaagggcaaaaacaaggccttgctggttgtgatcaaaataactctgtggaaatcgacagagtaactgacctgatccccaaaatcattggattcacaagcttcacaagtgcaacagtgaattccgaagaacagaaggttctcttaaagtcatcactgaaggtgttgcagaggctcacaagcattgaaggagaaattggcataacactaaggcacaagatatcaaaacatcccttcctgttgagaaaccttgcagagatcttgggtgacaacagcataacaccagaattaaggaagctcgtggcagaaatcctcagaaatcttgccattgacagagatgcaaggcaggagattgggcaaatacaggtgctcattaccaggctgatgaaggcattcctcaattgcaacggaccatctagtacaaatgctgattgcttgctgccaaaggtcgctgggcaagcattggcaatgctagcatcagaaaatgtggataactgcttggttatgtcgaaggaaccagagttcattaacaaactaagaaatatgatcctaatccatgatgataataaatacatatatgtggcagcaagcttgttacgtaatctatgcatgcatgctcaacccgagctcatggaatcagacctaaagggactatctcacatcttgccagcgatatgcaaagtccttcctaaagaattttcccaagaactagagcacagacagattaagcgaagattcattgagaggctagtggacttactgaatgcaaacatgaaaccaagtgctcattgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaataccagatgatggacgcactgtcaattgtagaattgacgtcctcaagggctgagaactacatggttttcttgggtgacacaggcttcatggaatgcagaaaacctctcttggctctagtggacaggacaaaagaactgatgggtcgtcagtggctgcaaggcatcaacagtgcctactga
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| Protein seq | MFAAIVMLVLMFDPDSRLEMIVIDICAAIILSFGNLHIPAALVRVSLAGYRLAEHNYFGVDDQKNFGESLTIFYSMVLGQGILYIVAGILEVFSFIPRRTLVRRGGFTGQWGVESVNLYYTYAFEKNMEGGVFAAKRISLSNFAMDSINSDLSKKQLYGIRMMHIFLQRDPTRAQLLEKLTTSTQTMARLISMLGWTSRNDHTTIRLYAAKVTAELAKSLRVVTVPGTMYLVSTLLDTDRKPKRRHPLLDEDDDRDPLFVDTVESQEKSQDAAGDQGQKQGLAGCDQNNSVEIDRVTDLIPKIIGFTSFTSATVNSEEQKVLLKSSLKVLQRLTSIEGEIGITLRHKISKHPFLLRNLAEILGDNSITPELRKLVAEILRNLAIDRDARQEIGQIQVLITRLMKAFLNCNGPSSTNADCLLPKVAGQALAMLASENVDNCLVMSKEPEFINKLRNMILIHDDNKYIYVAASLLRNLCMHAQPELMESDLKGLSHILPAICKVLPKEFSQELEHRQIKRRFIERLVDLLNANMKPSAHCPGIRRVILEQSIYMMECNSHYANCFNEYQMMDALSIVELTSSRAENYMVFLGDTGFMECRKPLLALVDRTKELMGRQWLQGINSAY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0040100 | OsLiXu_Ung0040100.01 | ChrUN-Ctg295 | 275986 | 278477 | + | NAM | ||
| CDS seq | atgtttgctgcaatagtgatgctggttctcatgtttgatccagactctcgattagagatgatcgtgatcgatatatgtgctgcaatcatactgtcatttggcaacttacatatcccagcagcactcgtgcgtgtcagcctcgcggggtatcgccttgcagaacataactacttcggtgttgatgaccaaaaaaattttggtgaatctctaaccatcttctatagcatggtgcttggccaaggaatactttacatcgttgcaggcatactggaggtcttctcgttcatccctcggagaaccctcgtccgccgtggtggattcacaggccaatggggagttgaatctgtcaatctgtactacacatacgccttcgagaaaaacatggaaggaggtgtatttgctgcaaagaggatcagcctcagcaactttgccatggattctataaattctgacttgtccaagaaacagctgtatgggatccggatgatgcacatttttctgcagagagatccgaccagggcacagctactggagaaactgaccacttcaacgcagaccatggcaaggttaatcagcatgctgggctggactagcagaaatgatcatacaactatcaggttatatgccgccaaggtaactgccgagcttgcaaagagcctccgagttgtaactgtccctgggacgatgtaccttgtttctacactcctggatactgacagaaaaccaaaaagaagacacccacttctggatgaagatgatgatcgagatcctttatttgttgatacagtagaaagtcaggagaaaagccaggatgcagctggtgatcaagggcaaaaacaaggccttgctggttgtgatcaaaataactctgtggaaatcgacagagtaactgacctgatccccaaaatcattggattcacaagcttcacaagtgcaacagtgaattccgaagaacagaaggttctcttaaagtcatcactgaaggtgttgcagaggctcacaagcattgaaggagaaattggcataacactaaggcacaagatatcaaaacatcccttcctgttgagaaaccttgcagagatcttgggtgacaacagcataacaccagaattaaggaagctcgtggcagaaatcctcagaaatcttgccattgacagagatgcaaggcaggagattgggcaaatacaggtgctcattaccaggctgatgaaggcattcctcaattgcaacggaccatctagtacaaatgctgattgcttgctgccaaaggtcgctgggcaagcattggcaatgctagcatcagaaaatgtggataactgcttggttatgtcgaaggaaccagagttcattaacaaactaagaaatatgatcctaatccatgatgataataaatacatatatgtggcagcaagcttgttacgtaatctatgcatgcatgctcaacccgagctcatggaatcagacctaaagggactatctcacatcttgccagcgatatgcaaagtccttcctaaagaattttcccaagaactagagcacagacagattaagcgaagattcattgagaggctagtggacttactgaatgcaaacatgaaaccaagtgctcattgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaataccagatgatggacgcactgtcaattgtagaattgacgtcctcaagggctgagaactacatggttttcttgggtgacacaggcttcatggaatgcagaaaacctctcttggctctagtggacaggacaaaagaactgatgggtcgtcagtggctgcaaggcatcaacagtgcctactga
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| Protein seq | MFAAIVMLVLMFDPDSRLEMIVIDICAAIILSFGNLHIPAALVRVSLAGYRLAEHNYFGVDDQKNFGESLTIFYSMVLGQGILYIVAGILEVFSFIPRRTLVRRGGFTGQWGVESVNLYYTYAFEKNMEGGVFAAKRISLSNFAMDSINSDLSKKQLYGIRMMHIFLQRDPTRAQLLEKLTTSTQTMARLISMLGWTSRNDHTTIRLYAAKVTAELAKSLRVVTVPGTMYLVSTLLDTDRKPKRRHPLLDEDDDRDPLFVDTVESQEKSQDAAGDQGQKQGLAGCDQNNSVEIDRVTDLIPKIIGFTSFTSATVNSEEQKVLLKSSLKVLQRLTSIEGEIGITLRHKISKHPFLLRNLAEILGDNSITPELRKLVAEILRNLAIDRDARQEIGQIQVLITRLMKAFLNCNGPSSTNADCLLPKVAGQALAMLASENVDNCLVMSKEPEFINKLRNMILIHDDNKYIYVAASLLRNLCMHAQPELMESDLKGLSHILPAICKVLPKEFSQELEHRQIKRRFIERLVDLLNANMKPSAHCPGIRRVILEQSIYMMECNSHYANCFNEYQMMDALSIVELTSSRAENYMVFLGDTGFMECRKPLLALVDRTKELMGRQWLQGINSAY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.178642 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0655201 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46130 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0655201 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025980 | SBH | 0.054827 | 2.017351 | 2.157070 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026020 | SBH | 0.0 | 0.226117 | 0.143747 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025870 | SBH | 0.000000 | 1.057909 | 0.927255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025640 | SBH | 0.016138 | 0.021481 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025900 | SBH | 0.692038 | 5.127905 | 3.575799 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0448400 | SBH | 1.407637 | 4.526718 | 2.4060825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026380 | SBH | 0.214887 | 0.064095 | 0.180715 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0460600 | SBH | 1.587676 | 4.826501 | 5.8579895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025660 | SBH | 0.085432 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026090 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025740 | SBH | 0.000000 | 8.166391 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025700 | SBH | 0.0 | 2.736874 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025800 | SBH | 0.0 | 0.000000 | 0.273119 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025590 | SBH | 0.000000 | 2.429490 | 0.877654 |
