Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0037870 | OGI:99040910 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg280:129692-132260 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCCACCGCCGCCGCCGCCGCCGTGCAGCCCGTGCTCCCCTCCTCCTCCGCCTCAACCGGAGGCCAGCAGCATGGTGTACTCACGGCTGACCGCGTGGCGGGGCTGCTCACCGGCTGCGCGACCCTCCGCCGAACCGGCGAGCTCCACGCCGCGGCGGTCCGCGCCGGCGTCGACGGCGACCGGGCGGTGGGCTTCCGCCTCCAGCGCGCCTACGCCGCATCCGGCCGCCTCGACCTCGCCGTCACGCTCCTCCGCCTCACGCCCGACCCCACCACCGTGTTCTACACCTCCGCCATCCACGCCCACTCCTCCCGCGGCCTCCACCTCGCCGCGCTCGCGCTGCTCTCCGAGATGCTGGGTAGGGGGCTCATCCCCACCTCGCACACCCTCTCCTCCTCCCTCCCCGCCTGCCACGGCCTCGCCCTTGGCCGCGCCCTTCACGCCTACGCCTTCAAGCTGGCGCTCGCCGGCGACTCCTACGTCGCCACCGCGCTGCTCGGCATGTACGCGCGCGGGGGCGACGCCGACGCCGCGCGCGCGCTGTTCGACGAAATGCCCGACCCGCACGTCGTGCCAGTCACGGCGATGCTCACCTGCTACGCCAAGATGGGGGCGCTCGACGACGCGCGCGAGCTGTTCGACGGGATGCCCAGCAAGGACTTCATCTGCTGGAACGCCATGATCGACGGCTACACGCAGCACGGGAGGCCGAACGAGGCGCTCCGGTTGTTCCGGTGGATGCTGCGGTCAGGTGTCGATCCCGATGAGGTGGCCATCATTCTTGCGCTCTCTGCAGTCGCGCAGCTCGGCACGGCAGAGTCCGGGAGGTGGCTTCATTCCTATGTCAAGAACAGCCGGCGAGTTCAGCTCAATGCCAGGGTTGGCACGGCGCTCATTGACATGTACTGCAAGTGTGGCAGCCTGGAGGACGCCGTGTCAGTGTTCAACAGCATCGGCGACAAAGACATCGTCGTCTGGAACGCCATGATCAACGGCTACGCGATGCACGGAGATAGCAGGAAGGCACTGGAGATGTTTTCGCAGCTGCGGTCACAAGGCCTCTGGCCAACTGACATCACCTTCATCGGCTTGCTCAATGCCTGCAGCCATTCTGGGCTTGTCGACGAAGGCCGCCAATTCTTCCAATCAATGGAGGAGGAGTACGCCATTGTCCCCAAGATCGAGCACTACGGTTGCATGGTCGATCTCCTCGGCCGTGCCGGGCTCATAGAAGAAGCATTCCACCTTGTCCACAGCATGACGATCGCCCCTGACACCGTCATGTGGGTGTCACTGCTCGCCGCGTGCCGGCTTCACAAGAACATGGCGTTAGGCCAGCAGATCGCCGACTATCTCGTCGCCGGTGGACTTGCCAACTCCGGTATGTACATCCTCCTGTCGAACATCTACGCGGCTGTTGGTAACTGGGAAGAAGTTGCAAGAGTAAGGTCCATGATGAAGGCCAGTGGCATCCAGAAGGAGCCCGGGTGCAGCGCCATCGAGGTCGGCCGCAAGGTCTACGAGTTCGTCGCCGGCGACATGAGCCATCCTCGCACCGATGAGATATACGCCATGCTGGAGAAGATGAACGGGATTGTGAAAGAGCAGGGACATGTTCCACAGACCGAGCTGGTGCTACATGATCTGGATGAGGTGACCAAGGAGAAGGCATTGGCAGTTCACAGCGAGAAGCTCGCCGTTGCGTTTGGGCTCATAAGCACGGCGCCCGGGGAGACGATCAAGATCGTCAAGAACCTGAGGGCGTGCGCCGATTGCCATGCCGTGCTGAAGCTGATATCGAAGATCACTGGGAGGAAGATCGTGTTCAGGGACAGGAACAGGTTTCACCATTTCGTTGATGGGTCATGCACTTGTGGAGATTACTGGTGATGCCGCCATGGCGTCTCACAGCTCATAGGATTGATTTGGTTTTAGCATTGCTACTAGATTTTGGTAGAATAGAATGAAGTGTTGATGTTTGGCTTTGCTAAAAATCGAGTTAGTATAGGTTACATTTTACAGTCTGCTTCCGGCTTTCCTGATCATGTTTGCAGCCATGTTGGGAAATCGGAGGCAGGCATCTTATTATAGAAAACAAAATCAAGTTGTACCATTCAAAGTGTAATTCTAAGCATCATTCTACAATTTCATGCGCCAAGGAGCCAACAAACTAGCATCAAAACATCTACCAGTCCACAGCAGCTAGCACAACCTGTTCCATGGCAAGGATCAGTTGGCACATTCACACCTGACCTGAGGGTATTCATTCCATAATAATTAAAAGTTAGTAACAGGATACTCACAAAGAACCAAAGGAGTTTTATTCTAACGCAAAACTCCACAATAAATTTGTTGGTTTGTCTGTAATTGTCCAATTCAATTACATACTCCATCCATCCCTTATATTTTAGGATGGAGAGTACCAAGGCTTTTGCAGCTTCTAACATTATGTGGTCTGCCTTTCTCTTAATCTTTTTCACGCCATCGTGAGAATTTCATAGTACAGTTTTGTGTGTATTTGAGTTTACTTTTATTTTTTTGTATGATTATTTTTTAGTATATTTGA
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| CDS seq | ATGTCCACCGCCGCCGCCGCCGCCGTGCAGCCCGTGCTCCCCTCCTCCTCCGCCTCAACCGGAGGCCAGCAGCATGGTGTACTCACGGCTGACCGCGTGGCGGGGCTGCTCACCGGCTGCGCGACCCTCCGCCGAACCGGCGAGCTCCACGCCGCGGCGGTCCGCGCCGGCGTCGACGGCGACCGGGCGGTGGGCTTCCGCCTCCAGCGCGCCTACGCCGCATCCGGCCGCCTCGACCTCGCCGTCACGCTCCTCCGCCTCACGCCCGACCCCACCACCGTGTTCTACACCTCCGCCATCCACGCCCACTCCTCCCGCGGCCTCCACCTCGCCGCGCTCGCGCTGCTCTCCGAGATGCTGGGTAGGGGGCTCATCCCCACCTCGCACACCCTCTCCTCCTCCCTCCCCGCCTGCCACGGCCTCGCCCTTGGCCGCGCCCTTCACGCCTACGCCTTCAAGCTGGCGCTCGCCGGCGACTCCTACGTCGCCACCGCGCTGCTCGGCATGTACGCGCGCGGGGGCGACGCCGACGCCGCGCGCGCGCTGTTCGACGAAATGCCCGACCCGCACGTCGTGCCAGTCACGGCGATGCTCACCTGCTACGCCAAGATGGGGGCGCTCGACGACGCGCGCGAGCTGTTCGACGGGATGCCCAGCAAGGACTTCATCTGCTGGAACGCCATGATCGACGGCTACACGCAGCACGGGAGGCCGAACGAGGCGCTCCGGTTGTTCCGGTGGATGCTGCGGTCAGGTGTCGATCCCGATGAGGTGGCCATCATTCTTGCGCTCTCTGCAGTCGCGCAGCTCGGCACGGCAGAGTCCGGGAGGTGGCTTCATTCCTATGTCAAGAACAGCCGGCGAGTTCAGCTCAATGCCAGGGTTGGCACGGCGCTCATTGACATGTACTGCAAGTGTGGCAGCCTGGAGGACGCCGTGTCAGTGTTCAACAGCATCGGCGACAAAGACATCGTCGTCTGGAACGCCATGATCAACGGCTACGCGATGCACGGAGATAGCAGGAAGGCACTGGAGATGTTTTCGCAGCTGCGGTCACAAGGCCTCTGGCCAACTGACATCACCTTCATCGGCTTGCTCAATGCCTGCAGCCATTCTGGGCTTGTCGACGAAGGCCGCCAATTCTTCCAATCAATGGAGGAGGAGTACGCCATTGTCCCCAAGATCGAGCACTACGGTTGCATGGTCGATCTCCTCGGCCGTGCCGGGCTCATAGAAGAAGCATTCCACCTTGTCCACAGCATGACGATCGCCCCTGACACCGTCATGTGGGTGTCACTGCTCGCCGCGTGCCGGCTTCACAAGAACATGGCGTTAGGCCAGCAGATCGCCGACTATCTCGTCGCCGGTGGACTTGCCAACTCCGGTATGTACATCCTCCTGTCGAACATCTACGCGGCTGTTGGTAACTGGGAAGAAGTTGCAAGAGTAAGGTCCATGATGAAGGCCAGTGGCATCCAGAAGGAGCCCGGGTGCAGCGCCATCGAGTATATTTGA
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| Protein seq | MSTAAAAAVQPVLPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASGRLDLAVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGRQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVHSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEYI |
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| Function | Pentatricopeptide repeat-containing protein ELI1, chloroplastic [UniProtKB/Swiss-Prot:Q9SZT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0037870 | OsLiXu_Ung0037870.01 | ChrUN-Ctg280 | 129692 | 132260 | + | NAM | ||
| CDS seq | ATGTCCACCGCCGCCGCCGCCGCCGTGCAGCCCGTGCTCCCCTCCTCCTCCGCCTCAACCGGAGGCCAGCAGCATGGTGTACTCACGGCTGACCGCGTGGCGGGGCTGCTCACCGGCTGCGCGACCCTCCGCCGAACCGGCGAGCTCCACGCCGCGGCGGTCCGCGCCGGCGTCGACGGCGACCGGGCGGTGGGCTTCCGCCTCCAGCGCGCCTACGCCGCATCCGGCCGCCTCGACCTCGCCGTCACGCTCCTCCGCCTCACGCCCGACCCCACCACCGTGTTCTACACCTCCGCCATCCACGCCCACTCCTCCCGCGGCCTCCACCTCGCCGCGCTCGCGCTGCTCTCCGAGATGCTGGGTAGGGGGCTCATCCCCACCTCGCACACCCTCTCCTCCTCCCTCCCCGCCTGCCACGGCCTCGCCCTTGGCCGCGCCCTTCACGCCTACGCCTTCAAGCTGGCGCTCGCCGGCGACTCCTACGTCGCCACCGCGCTGCTCGGCATGTACGCGCGCGGGGGCGACGCCGACGCCGCGCGCGCGCTGTTCGACGAAATGCCCGACCCGCACGTCGTGCCAGTCACGGCGATGCTCACCTGCTACGCCAAGATGGGGGCGCTCGACGACGCGCGCGAGCTGTTCGACGGGATGCCCAGCAAGGACTTCATCTGCTGGAACGCCATGATCGACGGCTACACGCAGCACGGGAGGCCGAACGAGGCGCTCCGGTTGTTCCGGTGGATGCTGCGGTCAGGTGTCGATCCCGATGAGGTGGCCATCATTCTTGCGCTCTCTGCAGTCGCGCAGCTCGGCACGGCAGAGTCCGGGAGGTGGCTTCATTCCTATGTCAAGAACAGCCGGCGAGTTCAGCTCAATGCCAGGGTTGGCACGGCGCTCATTGACATGTACTGCAAGTGTGGCAGCCTGGAGGACGCCGTGTCAGTGTTCAACAGCATCGGCGACAAAGACATCGTCGTCTGGAACGCCATGATCAACGGCTACGCGATGCACGGAGATAGCAGGAAGGCACTGGAGATGTTTTCGCAGCTGCGGTCACAAGGCCTCTGGCCAACTGACATCACCTTCATCGGCTTGCTCAATGCCTGCAGCCATTCTGGGCTTGTCGACGAAGGCCGCCAATTCTTCCAATCAATGGAGGAGGAGTACGCCATTGTCCCCAAGATCGAGCACTACGGTTGCATGGTCGATCTCCTCGGCCGTGCCGGGCTCATAGAAGAAGCATTCCACCTTGTCCACAGCATGACGATCGCCCCTGACACCGTCATGTGGGTGTCACTGCTCGCCGCGTGCCGGCTTCACAAGAACATGGCGTTAGGCCAGCAGATCGCCGACTATCTCGTCGCCGGTGGACTTGCCAACTCCGGTATGTACATCCTCCTGTCGAACATCTACGCGGCTGTTGGTAACTGGGAAGAAGTTGCAAGAGTAAGGTCCATGATGAAGGCCAGTGGCATCCAGAAGGAGCCCGGGTGCAGCGCCATCGAGTATATTTGA
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| Protein seq | MSTAAAAAVQPVLPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASGRLDLAVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGRQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVHSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEYI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.121667 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0113500 | SBH | 1.034146 | 1.065258 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02280 | SBH | 0.816305 | 0.848389 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0113500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000890 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000930 | SBH | 0.124690 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000860 | SBH | 0.000000 | 0.0 | 0.429377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000870 | SBH | 0.159968 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000880 | SBH | 3.948643 | 0.0 | 2.291019 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0012600 | SBH | 1.440026 | 0.4433605 | 0.3784315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000870 | SBH | 0.089071 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0010500 | SBH | 1.485635 | 0.1673525 | 1.651845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000930 | SBH | 0.053725 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000970 | SBH | 0.095124 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000960 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000900 | SBH | 0.074115 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000930 | SBH | 0.340949 | 0.401185 | 0.160055 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000940 | SBH | 0.534719 | 0.0 | 0.0 |
