Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0033900 | OGI:06041240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg247:145837-151772 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacatgttctctatgtccctggtagtgaaagggattttatcttggccaccatgtaacttagatagtactcccataatgtagttctgtggcacgtggctctcttgcatcatgtccacgaattgcataaccatgtcgtcgcggttcttatgcacgcgcatgtgctttaccgtagatggagacggtgttagaggatggttgtgctgaagatcaaccacatcaaacaccatagaagttaccataccatcgacatagttatgcctcactttcacgtaagccttgcatcctgtcttctttgatgatctgtactgctctctatcacaatctacaaccttcgacacgtgcctcccctccctggtacagcaaacctcacggattactttcctcgaacgactcttctttatatcaaaactagcgtggtaagcatatttctggtaaaaattgtaggcttcatcgtaggttgcgaaagacatcccttcagtgggtaccatatgcggagcaacgaaagcaccctataggttttaaaaaaaatgcatagtatgtcaaaaatgtggagttaagggacatgaacaccgaagccataaaaaggactgtatagggctataagcatgtaagttaatgtatgactcattagcacataatataccaaattataagcggttgagctgtcgcaatcagtctttctcttcctttcttagtagcagatccaacatgactgtattaaaccttaagcaatcagggttaagctagctcattgcctgaaagtggagctcgtattatacaccactgaatcaagaattcggtaattgaggagctcgattagtcatactcaccaccacctgctctaggcccattgccagatctcagaacaagtcagcagggagagggagtttatctaagcaagaatggggtcggggccaatgcttcgttttggcttgatctatttcacaacaagtgaagtgggagattgacggtctgtttacagactgcaatcagctcgggaaaaaaagaaagaagtatctaactagagctcgctcctttagtatttaatagggaaattcccaccgaaaaagccatgaaatcacgttgaaaataaggcaagcaattagagttttacgtaaggaaaaatacctcgcagaggatcttatggcccaaccctttctatttttgttttttcctaattgcgcacccctaccttttattgatagttaatgccgggtcttttccttctgaataagattgttagtttctgctagagaggttgctccaaaaatagtaacctgctcctggttcacatgaacaaagtgtagtagaacggacttccatccttttttgaaggaaatgcatacattggggaattccgggctccggagaatcaaacttactttctctatttagctcttaagcctttttctaccgaccgaacatgaagaagctcacggaagaagtaagtcattacggttggcagggattgactttccgttgaaatattttcttacctgttgtatagaagtcttcgtttcagtcctcctagtggccattgctcctagtatgagtagttgtgatgggctgcgagttcccggggtgacgagcctttagcatccagattgggcaatacgagatagattgatttacttcgaggatagtctttcttttccaagtcactttcgtaaccatatttcctacggctaacacgtgtccggtccagcgggaacgcgcagcgcaaacgaacgtgagctgctttaccgaatatcccctgctggccattggggacctagtggtaaggccatgatccgcagcgcaggggaagggatcactcattcttctattggggacaggtgcacgaatgacaactccaaacgtcagacatctgccgcctatacctaccgtttaggtggcaccagcgagatccagctaaggtaaggaacttcgtgtcgcggctgctccactccgctgcggtcttttgaacagaacttcattgcctccccgcgcacgaaacgaatgggtgtagtgtcgtgggtcagttttggggcggggggcagagagagaccagaagaatgattcatttggatcaacgagccatttcgcgattcaatagaatgtttctctatccgtatctattctatcTttatatgacgggccataaaaaaaagaagtatttttttatggcatgtgagatgatcgcgcctagtagccacatatcagctgcgctcaatatgcgggatttccgttggatctgatctttcgctttgacgaattggcctctggggatgacagctcgatgacgatcatggcgtcaccagtggagcagatcgtgtgacatcagtgtcctccggcgacgccattgacttcaatgaagcagctatggtggtctattttcgggtagagccctcacactgacttgaagtttgctagccttaacattttagttgtgcgtggtttaagggtgttttggcatttgtttcggatctaggagtggagtaattaaaaactatcggccagtccgataaatcctacgtacgtttttccccttgataactcgcatgcaggtcacggtgtgggattcgtagaagttaaattttaactaagcagactggtgtattaaacagtggtgccacgtcaaagttaaaaaataacttttcattgtaactcgaagtagattattgtttttctcaagaacggagcatcatcccttagcgagactgtagcatgtgttgggcatagattcggatcaaaaagcgtggggcccatccagtaatcgcggcggatataaaaaaaagatatggagagttgatgcgataaaattgtgattacgttcttttccgtaatgacagtaagggggtactcgctgatgttggacgatgagttgtaagttattttttaactaaaaacgctaagctgtcaacacccaggccgtgatattgttgagtggctagtcaaTttttaactttatgccgagttgccgacacttggtgtccagaaattttaatgtagcatagttaaattttaacttgtatccttgtatactggctgctcactttgctcttatagaattattatttaccggttgagtattatttttactattatgtcatttgaaaggttgcgcagtatgcacaatacttaaggacttagggactacgggatatggttttggtacggccacataggattctgatactaaatttagtttagttaaataataactcgtatccatgaatgcacaccaaaacactttcatctggcactttttgtttaccacgtgagttaaaatttgctgaggatgcattattttgatatgcaagacagagaacttagctcatgttgttataatgtgctttagattttgaatgggcgtgatgatagtgtccgttaatttttaactggatggttttaaaagaatcgtactaactcacgcagcttccggcaacttgagttataatttagctcatacatcattgcaagggtcaaaagaaggacatggggcaggtgaatttttgccggcataacaaaatgatgagttcaatttccaacttcccagcatagtttatgtacaaacaaaagaaattgtccatgaaaactaaataataaggagcacatcatgaagcttgttcggaggcgtcaccaacagaaggaccgagaaacgccgcgatctcaggatggcgtggatcagctaagttgtgatcgctggatacaagctggaacaggatgcttgagcggacaatcgtcgagttggtctgtggtacaaaatggataaaaattttggaaaagatggtgaataatgagtagttactatgtggctaattgggaatgagattgtatatagcgtgttaccgggatgttgagggtctcgatgggttccctactgccgtcgtaagcctccatatatttcattacatagaaggcacagtcattagagcagatggccatccgtgcacagttcatcatgttcttcctgaatccaccaaacctgcaaaaacgttttggtactaccttgtgcagtgcatcactcagccgcttcacgatccgttttgacagtgcaccatgcatggtggtcgcttacaagtgttccaattagcgggtaattgtttgagtccattacgttgatccgcttatgtggaatgttgattgcgtgcagtgactagtggctattgtggaaaacatggaccataatctgataggagggaaccgaagttagcaaaaaaaaaaaaacaattacacacaattacacttgtatcatgcacattcctggggaaaaggaaataatggtttatacacaggggaatataattgctatgtgaactatactgttgagtgcttaccagctgagctttggatgtgtttatctgccggatgaattgttctaatctactatccaaagcatcggctgagaacggttgtgtgacaccgttatgctttattaagttgatgttcaataggtactgcaatgtgtgcaacaatgattggagttcaaaaaataaacttcaactggtacggaagaaagcggcaaaaaaggcaggggtgtgttaagaagtaatagaaattggagatgctttttgttaccaataaatttgttgggatgaatattctttttccaaaggtgtctggtttgatcgtcatatcatccttgaaaagcatagagctggaagcgtctatgaagagcccctcggtcaagttcccgttagaaaatgactcaaccacatcggaagcatatgccaccgaggagtcaatctccaaaagtttaacgctgtcataaattgaaattaaatgacgatcagcgtgaatgaataaatatctttgaggacatgttttaacagcaaacacgggaaaaaagggttgagaaatgtgtcccaaccttttgagacgatccacgtttttcaacatgaattccctgagctgtatgctggcagaaatgcgagttgtcggttgtgggttacccacaaccaccggtgagacaaatcgtgcgggcttttggataaaccgcttaggctacgcccatggcgtggagtttaccccttccgtatcgtcagtggtctcaacctttagctgtaattAaaaaaattgtcattatgaaaggggtgtgattttaagtaatgtatgaatcgaaagcgcaatggagtaataagatgttaatgtgcgtatgtgtcacatacctgaaataataggacttaaaatttcttggcaaaatagttataagctaacttctacaattttgagagccaaaaatttccgttttaacttcggtgagaccaacctaagcaatcgcataaataaaatttgagaaccaaataaagctttttcattcctaaccttgagcataaatgcaatcatacatgtgtgcatgcatctatattaatataaaaaggaggagttgtctccttgcaatgctacaagtgaaatcaacttacttaatcccatcgtccatccgccatctcatctgatctcatccattgatcctcctcgttgtaggaaatcaccaccaatcccaccgattcctctccaccgctctttctgcccgcgcgatgagtcgtccgcgtgaatcctgccacctcctcgctccgctcgaatccccgctgctgccgcagtgcaccactggaccagcgccaatccccgccgcctcctcgctcctcctctctctactcgaatcctcgctgccgccgcagtccaccgctggaccagcgccgccgctgccgcgcctccatcgccggaccacctcactcactgctgcacctcctcgagactccccgccacacgccaccgcatcgtgcccctccgctcccaggccggcgctcacctcgctcctctgttcaccatcgcaggggtcggtgagccggtgaaagcccccgtaagaccaaggattgtggcttccgtgacgaccccaactccattgtgccccacggttttgactccctctgcctgaacggtgacccttacccat
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| CDS seq | atgggtaagggtcaccgttcaggcagagggagtcaaaaccgtggggcacaatggagttggggtcgtcacggaagccacaatccttggtcttacgggggctttcaccggctcaccgacccctgcgatggtgaacagaggagcgaggtgagcgccggcctgggagcggaggggcacgatgcggtggcgtgtggcggggagtctcgaggaggtgcagcagtgagtgaggtggtccggcgatggaggcgcggcagcggcggcgctggtccagcggtggactgcggcggcagcgaggattcgagtagagagaggaggagcgaggaggcggcggggattggcgctggtccagtgctaaaggttgagaccactgacgatacggaagggcctaagcggtttatccaaaagcccgcacgatttgtctcaccggtggttgtgggtaacccacaaccgacaactcgcatttctgccagcatacagctcagggaattcatgttgaaaaacgtggatcgtctcaaaaggttgggacacatttctcaacccttttttcccgtgtttgctgttaaaacatgtcctcaaagatatttattcattcacgctgatcgtcatttaatttcaatttatgacagcgttaaacttttggagattgactcctcggtggcatatgcttccgatgtggttgagtcattttctaacgggaacttgaccgaggggctcttcatagacgcttccagctctatgcttttcaaggatgatatgacgatcaaaccagacacctttggaaaaagaatattcatcccaacaaatttattgtacctattgaacatcaacttaataaagcataacggtgtcacacaaccgttctcagccgatgctttggatagtagattagaacaattcatccggcagataaacacatccaaagctcagctggcttacgacggcagtagggaacccatcgagaccctcaacatcccgaccaactcgacgattgtccgctcaagcatcctgttccagcttgtatccagcgatcacaacttagctgatccacgccatcctgagatcgcggcgtttctcggtccttctgttgcggagtggagcagccgcgacacgaagttccttaccttagctggatctcgctggtgccacctaaacggtaggctcgtcaccccgggaactcgcagcccatcacaactactcatactaggagcaatggccactaggaggactgaaacgaagacttctatacaacagggtgctttcgttgctccgcatatggtacccactgaagggatgtctttcgcaacctacgatgaagcctacaatttttaccagaaatatgcttaccacgctagttttgatataaagaagagtcgttcgaggaaagtaatccgtgaggtttgctgtaccagggaggggaggcacgtgtcgaaggttgtagattgtgatagagagcagtacagatcatcaaagaagacaggatgcaaggcttacgtgaaagtgaggcataactatgtcgatggtatggtaacttctatggtgtttgatgtggttgatcttcagcacaaccatcctctaacaccgtctccatctacggtaaagcacatgcgcgtgcataagaaccgcgacgacatggttatgcaattcgtggacatgatgcaagagagccacgtgccacagaactacattatgggagtactatctaagttacatggtggccaagataaaatccctttcactaccagggacatagagaacatgtga
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| Protein seq | MGKGHRSGRGSQNRGAQWSWGRHGSHNPWSYGGFHRLTDPCDGEQRSEVSAGLGAEGHDAVACGGESRGGAAVSEVVRRWRRGSGGAGPAVDCGGSEDSSRERRSEEAAGIGAGPVLKVETTDDTEGPKRFIQKPARFVSPVVVGNPQPTTRISASIQLREFMLKNVDRLKRLGHISQPFFPVFAVKTCPQRYLFIHADRHLISIYDSVKLLEIDSSVAYASDVVESFSNGNLTEGLFIDASSSMLFKDDMTIKPDTFGKRIFIPTNLLYLLNINLIKHNGVTQPFSADALDSRLEQFIRQINTSKAQLAYDGSREPIETLNIPTNSTIVRSSILFQLVSSDHNLADPRHPEIAAFLGPSVAEWSSRDTKFLTLAGSRWCHLNGRLVTPGTRSPSQLLILGAMATRRTETKTSIQQGAFVAPHMVPTEGMSFATYDEAYNFYQKYAYHASFDIKKSRSRKVIREVCCTREGRHVSKVVDCDREQYRSSKKTGCKAYVKVRHNYVDGMVTSMVFDVVDLQHNHPLTPSPSTVKHMRVHKNRDDMVMQFVDMMQESHVPQNYIMGVLSKLHGGQDKIPFTTRDIENM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0033900 | OsLiXu_Ung0033900.01 | ChrUN-Ctg247 | 145837 | 151772 | - | NAM | ||
| CDS seq | atgggtaagggtcaccgttcaggcagagggagtcaaaaccgtggggcacaatggagttggggtcgtcacggaagccacaatccttggtcttacgggggctttcaccggctcaccgacccctgcgatggtgaacagaggagcgaggtgagcgccggcctgggagcggaggggcacgatgcggtggcgtgtggcggggagtctcgaggaggtgcagcagtgagtgaggtggtccggcgatggaggcgcggcagcggcggcgctggtccagcggtggactgcggcggcagcgaggattcgagtagagagaggaggagcgaggaggcggcggggattggcgctggtccagtgctaaaggttgagaccactgacgatacggaagggcctaagcggtttatccaaaagcccgcacgatttgtctcaccggtggttgtgggtaacccacaaccgacaactcgcatttctgccagcatacagctcagggaattcatgttgaaaaacgtggatcgtctcaaaaggttgggacacatttctcaacccttttttcccgtgtttgctgttaaaacatgtcctcaaagatatttattcattcacgctgatcgtcatttaatttcaatttatgacagcgttaaacttttggagattgactcctcggtggcatatgcttccgatgtggttgagtcattttctaacgggaacttgaccgaggggctcttcatagacgcttccagctctatgcttttcaaggatgatatgacgatcaaaccagacacctttggaaaaagaatattcatcccaacaaatttattgtacctattgaacatcaacttaataaagcataacggtgtcacacaaccgttctcagccgatgctttggatagtagattagaacaattcatccggcagataaacacatccaaagctcagctggcttacgacggcagtagggaacccatcgagaccctcaacatcccgaccaactcgacgattgtccgctcaagcatcctgttccagcttgtatccagcgatcacaacttagctgatccacgccatcctgagatcgcggcgtttctcggtccttctgttgcggagtggagcagccgcgacacgaagttccttaccttagctggatctcgctggtgccacctaaacggtaggctcgtcaccccgggaactcgcagcccatcacaactactcatactaggagcaatggccactaggaggactgaaacgaagacttctatacaacagggtgctttcgttgctccgcatatggtacccactgaagggatgtctttcgcaacctacgatgaagcctacaatttttaccagaaatatgcttaccacgctagttttgatataaagaagagtcgttcgaggaaagtaatccgtgaggtttgctgtaccagggaggggaggcacgtgtcgaaggttgtagattgtgatagagagcagtacagatcatcaaagaagacaggatgcaaggcttacgtgaaagtgaggcataactatgtcgatggtatggtaacttctatggtgtttgatgtggttgatcttcagcacaaccatcctctaacaccgtctccatctacggtaaagcacatgcgcgtgcataagaaccgcgacgacatggttatgcaattcgtggacatgatgcaagagagccacgtgccacagaactacattatgggagtactatctaagttacatggtggccaagataaaatccctttcactaccagggacatagagaacatgtga
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| Protein seq | MGKGHRSGRGSQNRGAQWSWGRHGSHNPWSYGGFHRLTDPCDGEQRSEVSAGLGAEGHDAVACGGESRGGAAVSEVVRRWRRGSGGAGPAVDCGGSEDSSRERRSEEAAGIGAGPVLKVETTDDTEGPKRFIQKPARFVSPVVVGNPQPTTRISASIQLREFMLKNVDRLKRLGHISQPFFPVFAVKTCPQRYLFIHADRHLISIYDSVKLLEIDSSVAYASDVVESFSNGNLTEGLFIDASSSMLFKDDMTIKPDTFGKRIFIPTNLLYLLNINLIKHNGVTQPFSADALDSRLEQFIRQINTSKAQLAYDGSREPIETLNIPTNSTIVRSSILFQLVSSDHNLADPRHPEIAAFLGPSVAEWSSRDTKFLTLAGSRWCHLNGRLVTPGTRSPSQLLILGAMATRRTETKTSIQQGAFVAPHMVPTEGMSFATYDEAYNFYQKYAYHASFDIKKSRSRKVIREVCCTREGRHVSKVVDCDREQYRSSKKTGCKAYVKVRHNYVDGMVTSMVFDVVDLQHNHPLTPSPSTVKHMRVHKNRDDMVMQFVDMMQESHVPQNYIMGVLSKLHGGQDKIPFTTRDIENM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.106648 | 0.0 | 0.448571 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g28260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015110 | SBH | 0.045071 | 0.0 | 0.549024 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0015080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015080 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015310 | SBH | 0.399305 | 1.271517 | 2.654288 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0238800 | RBH | 0.251747 | 0.226727 | 0.0658505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014800 | SBH | 0.000000 | 0.000000 | 0.211955 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0225900 | SBH | 0.12798 | 0.120412 | 0.4823625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015270 | SBH | 0.021745 | 0.068518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015230 | SBH | 0.045754 | 1.513820 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014950 | SBH | 0.637295 | 5.120687 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015570 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015010 | SBH | 0.028515 | 0.733965 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014900 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015210 | SBH | 0.451214 | 5.574862 | 3.626108 |
