Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0033370 | OGI:06039690 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg243:487939-494315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatgagcgctcctcctcctcgcgtttgctgccaccaccaccacacgggactcacactcctcctcgcgtgtgctactgccggtctgccgccaccacgcgccgctccgcctcaatccaccgctgcccccgccggcgcgactcgctccttctccctcctcctcctcacgtgtactgctgccgccgcctcactccaccactgcctccgccggagccgatttcttctccagccgccttcggagccgtggtattccccattcaccgcggctggagccgaggtcgtcccttccgccaccgccgctgcactccactactgcccccaccagagcccaggtcttccccagccaccaccggacccgtggtcttccccatccttcgccaccggagccgaggtcgtccccttccgcgcccgcacgcacattctgctgccgctgctccagtgacgcgcggccacgaccaccggtgatggcgacgtgtgggtttgcagcaacacctccttactccgcctcaagaaccgtcgtcatcactcggtgtcggctgtcatcaccaatcggtcgtcgtccgctaccccaggactcgatctgcgtcgcctccaaccggattggctgctccaagctcgagtgactgtaggggatgaagagcgtgatgccggatctggcccaccggcggcgacggatccgacaactcgatggccctaggcggcaggctggatgttagaaacccaaatgggctgcctgtgggctgtcaaccactttcaaagcaaggcccaagcaagcaaatcaggagcacatataaacagcaggagcagcatcagagaggagatcgaacagagaacaacagaaccggttgaggggcttctcggcggcgacggcggtggcggcgatctggaaccgggcttggttccttgtcgatctttactctccctcttcttctacttgtctagaagctactagaaccttctagcctttgtatccttccattttccacctcaaaacccctccactattgtaacagactcggttgttccttgtgttggatttggtactcctactcctgaaattgcattgttgagtgggttttctaacaaatctggtatcagagccaccaaaccccaccaaattcactaagcaagcatccatggaaggtgaggataagttggatttgattttgaggcggatggaggagttcgaacggaggtaggtggaggcagatcagaggagagctgaataccagtctctcaaggcggcggtagaatcgtggatgcctgaaatccagaagaatgctgaagacctatagtttttggttggggatgagcagtccaaggtgacgctcaccacctgttcgacaaagtgccccaatggcagcagcccgagcagaacagcgagatccatctacgacgacgaggggtctactccgacgatcatcctggagcttggggatggtgaggacaagattcatgacccttacatcgtcgccaaggactctcttgaggtcacgcccaccatgtgttcgatgaaatgctccatccccgacaccgagtccaatctcaccatggttgcggaggtgacctacgctagcacagccactgtctctatggagttggtagctgctcaggaagccattgatgccacgtacagcgacacctctgaccattccaaggtgatgcacaccaagtgtttgacggttgtcctcgatgctattggtgacaccggtcaagctatggttgtgttccagacctggacagatgcattcaaggacgttccgacctccgttcagttcatggactttttctcatcaagtatgatggctaacatcaagtggaacacaccaatacccattaagtattcggtgcagttccttgggcatgacatgttggctacaaaccctcttgatgttaactcatggccacctccttggtcagatggagtgattagaggtagagacttaaggccttcgccatggccgggattcaatttctgtgggacggtggaacacttgatgccaccatggccacccccaactcagccaatgcctctaatgtatccatcaaaatttggccttgtgtttacaatagatggagtacacattaattggaatcttgttgttgcagtgcataagattttttggagtgatgatcaaatcaatgagacatgtaccaagcatcagtagtgagctggatgacatccaagggaaatccactatgatatttattgatgttacaatccctgaaggatgtaatccaaagaaatcaggctctgcgacaacagaaacaatattcaactcattctcagaactattagatgtgcacttgactactattgaaatgcttgtctccaaaagaagccaagaagttcgttgttggcagggagctcttgagttgcaagtcagtgtgctcttctggttactggcaaggaacatcaatcctcctaaatttgaagtacaagtactggagtttttattgagggtgctcattggcagcttaagtgaaaaatactctggtaatactattgatcttgaggtgtgcttttcgaaaataggtatatgtttacacagagatgtccttaagttcccaatttcacaatcaacaaatgcctgcattacaattttgtgtgatcgaaatgctgctttcagttttgacacaagcatggagtggaatagtgatacaagaaaaatcatacaagaaacaatgagcttactggagcattcagtgatgatttttaccagcatgctggacctacattggtctgtaattaatacagaaaagtggacttcaggatcattaccatcctcgtgtattgctcttgctgacaagtacaagacttcaagttttgccatggtctgttgcagtaaactgaatcactctcacaaaacaataattgtgcacttactgatcaggaacaagctcaagacatggatatctgaaatgattggaagaaagatcgtgttgatgctaagttcacaattgtttgtcagctatcaagatcacttcaatctgggacacatattcttgacctttattctgcagaggagcacatttctgacaatttccttaatgttatcatgtggtgttcagttcctatcaagaatctacataaacagtgggaccccggtggctctggtgaaactttgcatcggcttggggacaagccgaaatttaaggagaggagattgttaggaacccaaatgggctgcctgtgggctgtcaaccactttcaaagcaaggcccaagaaagcaaatcaggagcacatataaacagcaggagcagcaccagagaggagatcgaacagagaacaacagaaccggttgaggggcttctcggcggagacggcggcggcggcgacctggaaccgggcttggttccttgtcgatctttactctccctcttcttctacttgtctagaagctagtagaacctactagcctttgtatccttccattttccacctcaaaacccctcctctattgtaacagactcggttgttccttgtgttggatttggtactcctactcctgaaattgcattgttgagtgggtctctaacactggaataagtcaggtatgcaaccttttgattagtaagtttgttaatgcacacgaagtcacttcaaagaggaaaagttaacggcagatgaagtacacatgaagttcctagacttagttgaatctttgcaattgcatttgctgcctttttctggttttctttgatatacacatctaatggtcaacgaccctgttcctcacaatttctcaaaagctgcttctaactctatgctatttcatagaagtgaaatctattaaagctcccattgttccagatggtggaaaatctgagtctgaggtgaaaagacaaacttggtatgctaTtttttttttatcattatcgatttgggttcttgctgttcatcaagttgtgtataatctcccttctacccagatcatacatttatgttgtcaacttgagcttcttgccacaggacatacatgatttttaatacgtttgttgagcgttatttgtgtgatatttaagtgcaaatgccagaacactaatttcaggaagttacaattgcaaaaagctgatagcatacaattttttgggtggattatgcatttgctacacatggacaaaatagtggaatcacatgaaatggtcgtccattctgaccacggtcaatcacatatggttccttttcctttatatatatgagttcattcatgcatgtctaggtctttcttgttgactgccaaacaattcatggaaacagtaggaccctttttttatataaaattgaactggtgatggacagacatatccatttgaatatacataattctgttcttttcttcatatataatggttctcttgaaattatataatggttctctcttgaaaatcactgaaatacataactcttttgctttgaacctttcaatcatttgtcaagttatggtaagttgtatacattttgtaacttgagtacttttcacttttacagaaaggataccatatcacgttagggtacatttcttaaacaggtatgtttagtatgacgtatattatgggcaaacatgataaattccagtgtatttaatattttgtgtgataaaccatgtgaaacgtgcattgcacatgcataaacttggaaatgcttcaattccacacaaaagcaggttcttggtcatcctccaccaactttgttccatctgagttttcccctgcacaagcttctacattgtccaaagatactacttgaaataatctcagtcaagtattatttgattgatatagactgtagtaatgttctgctagccttattttcatccttggttatttcataagtgcagagaaggttttatggtgatgtggtacctacagtcttccttctaaacaatgttctgctgctcacgtggatcttcaacttggaaaataaatcatgtatgtaccattttcctttgtaccttcacccgaaacttattcagttagtttgcctctccatagtgaatcggagtcaagttcaatggttgtttaaatactaatcaatgatgattaacttataccctttaactagattttattcagctgtactccatctctaacctttgttcagtccagctgattagtcctaggttgatccattgtacaataggaacatgtgctcactcgatgaactggtgccaagaattggacaagattctctcgcttgccaccactatcctgtcggtaggcaactatatttctataatttttttttacatttttcatccttgatcttgataattgtcctgtagttgggtcagattaaccgttcctttttacccagcaaatgaccatattgcatagatttagtttttcttatactgaaattgatgaggtggttattatccttagttcttctaccttcaaatttcatttgttttccctttatgagaattattcggttgtccttctcctaataaaaagtgctttctgaagatgataacataaggtgatgcaaatgtaataaaagaaggtttgttggaaccatgccaccctaattttgcaaaatttgagatatgccacccgtatctcaatgacatgtagtacccacatgagtcaatgacatgcgggttagggtggcatatcacaaattttgcaaaatttgtgtggcatggttcaaattttcccataaaagaatgtaattgcatgaactgatttgatcaaagcacaaaacatgagtgcaattgatcaccatctgctcaaatttcactcctctgctcaaaactactcacttctagacagtagatccatcagttaagcgtgttaatattccttcccagtagcttctattttacagattggttctctctttctgaattcatgcatcaaatatcacatttttctttagtttactaaaagtcttaaaatgtataagttctgttaggaaattttcagctatctgtttagtcaataatgtacagcgaaactgaccctttcgaaatttccatattaTtttacttaatgtctttttccatataagtctcaaaattttggttcaagctgaatatatgtttctctccattgttaatgtgaactaacaagaataatatgtacttcattcagggatttggcgagaggtgcggagatgagagtgacggaaaaggcgacgagagcggcgacgatctcggcggcgtttgctcgcgcgcgctcgacggaaaaggtgattcaatttgccagttatcaaaaaaaatgtacttcattcaatatatattgacgtgctttgcacgtgaaaaatcaccttttgtggagtgcggcggcggctggggatgacctcggctctatcagggggcagcgctggactgcagcggatgtggaagacctcggctctgtcggggtctgcgcttga
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| CDS seq | atgttagaaacccaaatgggctgcctgtgggctgtcaaccactttcaaagcaaggcccaagcaagcaaatcaggagcacatataaacagcaggagcagcatcagagaggagatcgaacagagaacaacagaaccggttgaggggcttctcggcggcgacggcgcgagatccatctacgacgacgaggggtctactccgacgatcatcctggagcttggggatggtgaggacaagattcatgacccttacatcgtcgccaaggactctcttgaggtcacgcccaccatgtgttcgatgaaatgctccatccccgacaccgagtccaatctcaccatggttgcggaggtgacctacgctagcacagccactgtctctatggagttggtagctgctcaggaagccattgatgccacgtacagcgacacctctgaccattccaaggtgatgcacaccaagtgtttgacggttgtcctcgatgctattggtgacaccggtcaagctatggttgtgttccagacctggacagatgcattcaaggacgttccgacctccgttcagttcatggactttttctcatcaagtatgatggctaacatcaagtggaacacaccaatacccattaagtattcggtgcagttccttgggcatgacatgttggctacaaaccctcttgatgttaactcatggccacctccttggtcagatggaagacttaaggccttcgccatggccgggattcaatttctgtgggacggtggaacacttgatgccaccatggccacccccaactcagccaatgcctctaattgcataagattttttggagtgatgatcaaatcaatgagacatgtaccaagcatcagtagtgagctggatgacatccaagggaaatccactatgatatttattgatgttacaatccctgaaggatgtaatccaaagaaatcaggctctgcgacaacagaaacaatattcaactcattctcagaactattagatgtgcacttgactactattgaaatgcttgtctccaaaagaagccaagaagttcgttgttggcagggagctcttgagttgcaagtcagtgtgctcttctggttactggcaaggaacatcaatcctcctaaatttgaagtacaagtactggagtttttattgagggtgctcattggcagcttaagtgaaaaatactctggtaatactattgatcttgagctatcaagatcacttcaatctgggacacatattcttgacctttattctgcagaggagcacatttctgacaatttccttaatggatttggcgagaggtgcggagatgagagtgacggaaaaggcgacgagagcggcgacgatctcggcggcgtttgctcgcgcgcgctcgacggaaaaggtgattcaatttgccagttatcaaaaaaaattgcggcggcggctggggatgacctcggctctatcagggggcagcgctggactgcagcggatgtggaagacctcggctctgtcggggtctgcgcttga
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| Protein seq | MLETQMGCLWAVNHFQSKAQASKSGAHINSRSSIREEIEQRTTEPVEGLLGGDGARSIYDDEGSTPTIILELGDGEDKIHDPYIVAKDSLEVTPTMCSMKCSIPDTESNLTMVAEVTYASTATVSMELVAAQEAIDATYSDTSDHSKVMHTKCLTVVLDAIGDTGQAMVVFQTWTDAFKDVPTSVQFMDFFSSSMMANIKWNTPIPIKYSVQFLGHDMLATNPLDVNSWPPPWSDGRLKAFAMAGIQFLWDGGTLDATMATPNSANASNCIRFFGVMIKSMRHVPSISSELDDIQGKSTMIFIDVTIPEGCNPKKSGSATTETIFNSFSELLDVHLTTIEMLVSKRSQEVRCWQGALELQVSVLFWLLARNINPPKFEVQVLEFLLRVLIGSLSEKYSGNTIDLELSRSLQSGTHILDLYSAEEHISDNFLNGFGERCGDESDGKGDESGDDLGGVCSRALDGKGDSICQLSKKIAAAAGDDLGSIRGQRWTAADVEDLGSVGVCA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0033370 | OsLiXu_Ung0033370.01 | ChrUN-Ctg243 | 487939 | 494315 | + | NAM | ||
| CDS seq | atgttagaaacccaaatgggctgcctgtgggctgtcaaccactttcaaagcaaggcccaagcaagcaaatcaggagcacatataaacagcaggagcagcatcagagaggagatcgaacagagaacaacagaaccggttgaggggcttctcggcggcgacggcgcgagatccatctacgacgacgaggggtctactccgacgatcatcctggagcttggggatggtgaggacaagattcatgacccttacatcgtcgccaaggactctcttgaggtcacgcccaccatgtgttcgatgaaatgctccatccccgacaccgagtccaatctcaccatggttgcggaggtgacctacgctagcacagccactgtctctatggagttggtagctgctcaggaagccattgatgccacgtacagcgacacctctgaccattccaaggtgatgcacaccaagtgtttgacggttgtcctcgatgctattggtgacaccggtcaagctatggttgtgttccagacctggacagatgcattcaaggacgttccgacctccgttcagttcatggactttttctcatcaagtatgatggctaacatcaagtggaacacaccaatacccattaagtattcggtgcagttccttgggcatgacatgttggctacaaaccctcttgatgttaactcatggccacctccttggtcagatggaagacttaaggccttcgccatggccgggattcaatttctgtgggacggtggaacacttgatgccaccatggccacccccaactcagccaatgcctctaattgcataagattttttggagtgatgatcaaatcaatgagacatgtaccaagcatcagtagtgagctggatgacatccaagggaaatccactatgatatttattgatgttacaatccctgaaggatgtaatccaaagaaatcaggctctgcgacaacagaaacaatattcaactcattctcagaactattagatgtgcacttgactactattgaaatgcttgtctccaaaagaagccaagaagttcgttgttggcagggagctcttgagttgcaagtcagtgtgctcttctggttactggcaaggaacatcaatcctcctaaatttgaagtacaagtactggagtttttattgagggtgctcattggcagcttaagtgaaaaatactctggtaatactattgatcttgagctatcaagatcacttcaatctgggacacatattcttgacctttattctgcagaggagcacatttctgacaatttccttaatggatttggcgagaggtgcggagatgagagtgacggaaaaggcgacgagagcggcgacgatctcggcggcgtttgctcgcgcgcgctcgacggaaaaggtgattcaatttgccagttatcaaaaaaaattgcggcggcggctggggatgacctcggctctatcagggggcagcgctggactgcagcggatgtggaagacctcggctctgtcggggtctgcgcttga
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| Protein seq | MLETQMGCLWAVNHFQSKAQASKSGAHINSRSSIREEIEQRTTEPVEGLLGGDGARSIYDDEGSTPTIILELGDGEDKIHDPYIVAKDSLEVTPTMCSMKCSIPDTESNLTMVAEVTYASTATVSMELVAAQEAIDATYSDTSDHSKVMHTKCLTVVLDAIGDTGQAMVVFQTWTDAFKDVPTSVQFMDFFSSSMMANIKWNTPIPIKYSVQFLGHDMLATNPLDVNSWPPPWSDGRLKAFAMAGIQFLWDGGTLDATMATPNSANASNCIRFFGVMIKSMRHVPSISSELDDIQGKSTMIFIDVTIPEGCNPKKSGSATTETIFNSFSELLDVHLTTIEMLVSKRSQEVRCWQGALELQVSVLFWLLARNINPPKFEVQVLEFLLRVLIGSLSEKYSGNTIDLELSRSLQSGTHILDLYSAEEHISDNFLNGFGERCGDESDGKGDESGDDLGGVCSRALDGKGDSICQLSKKIAAAAGDDLGSIRGQRWTAADVEDLGSVGVCA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.276273 | 0.0 | 0.077346 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0483500 | SBH | 4.810618 | 6.093283 | 2.130057 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g28840 | SBH | 2.723229 | 3.770041 | 0.548096 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0483500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014810 | SBH | 1.080534 | 1.913194 | 2.263543 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014540 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014790 | SBH | 2.497216 | 1.925266 | 4.348151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0014660 | SBH | 0.044130 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014750 | SBH | 2.035666 | 0.0 | 3.269727 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014230 | SBH | 0.0 | 0.000000 | 0.108737 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0014800 | SBH | 0.220273 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014740 | SBH | 0.549778 | 2.098531 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014440 | SBH | 7.783694 | 3.361647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015030 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014540 | SBH | 0.106032 | 2.088749 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014370 | SBH | 0.143181 | 1.587066 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014740 | RBH | 0.454488 | 0.0 | 3.883118 |
