Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0032320 | OGI:06032320 | 2/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg237:293651-295596 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagaacctgttttgcttctgcggcgacaccacgggaagggggtcggaccgtcgaagagggcatcgatggctgactggtgtgttctgacatatcgcccaccgcttccgatgtaatccctggtgttcctctactctatgccctacccctttccgttgccgcttcccatctaatccccaatcatccggtactttggtcactaacaatgtgtcttttagcttcgtcagttcagcaacacaatccgtcggcgctcaggtatttctgtgtctccagcttttctcaaacagcgtcgtgttgaggggattggtctggatgtggcgttgccttcttacgcagaacatttactcattgccaggcattaaagtgcttgggttcatatatcatcaaaaacacctcacgagcatggggagcaatactggattgaattgatcacctatatatattctatatttttacgcaactaatgctgtaattcataggggaaggcttaagctaacttgtctttgttgttttgtctcttgtacctagctaatgcacaagtaataatgatttacagtgaacgagcttgttgcttcagtttttcgggaaccttgaaccattattcaaatgatctcttttttgctctgctcctcatgtcagagatttttttttcggtgagatcacttattattttaatcaattaatatcgatgatcagctgaacaacgtggttatattccaggacctaatggaacttttgttggtgtgcactgaacgcccgcagaacttattttcttgtcaatcaatatagttgatgtgtgtgagtctgacacacacaagcacaccatccagatcgacctgaatgtaacctcggtttcttttgctcaattttttcatagagatggggattgtgcatttctgttcatgaaggaacaacgtttctaattttcttttctcagcaatacgtggagcgtgaagtcgctgttattctatccttcaaatcgaagttatagtattatacatattttatctattcttcatacattgtgcctgtagaatttgcaaggaaattatattcaaagaccttgttgcctatgctgtgcagagctcgttgttacttgttcgactaatggtttttttactctttggatctaacaagcgaccgaaaaactccaaatgatcatggtgaatcttcttgtcatttatgttgccttgggtgctacaatctaaattttccgttgaaatgacaaagaaatagcaatttagtgacataatacctaattcattagcaagaaccagcactcttccctttaagttttgtttgtcatgaattaggttgccttgatgcatggagcaattgaacacttttggtataacacacatgactgctaagctcgtgagcattttcttgttggcaccttgtctctggcaccttatctctaaggatgataagatcctggaattagtgacctgatatgatctagctctcttgtagctatgcggctatgcatattgcagtagaggaaatagagctcaatgtatgtctccgcttgccgattccaccatttccccacttttggtgttggttctatgtaagtaacactaccgacaaatttatggggatttcctttcctgtttcagcttatatgggaatgtgggataattccggtgagcccgacacggtgagggataggatactgttggagctcgagcaggagttccttgaggtctacaggacaaaaatcgacaaggtgaaccagagccgggtgcagctgaggcaggccattgccgaggccgagcagagcttgctgacatctgttcgtccatgggtgaaaccgcccatgcacgttagactggtttgtttctacctccaccaggtaaacgaggtactgtacgattagatcaaacgatgtaagttgagttcttgtggaacaatgctgataggcgaaggaagaaaaggagatttag
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| CDS seq | atggagaacctgttttgcttctgcggcgacaccacgggaagggggtcggaccgtcgaagagggcatcgatggctgactgcttatatgggaatgtgggataattccggtgagcccgacacggtgagggataggatactgttggagctcgagcaggagttccttgaggtctacaggacaaaaatcgacaaggtgaaccagagccgggtgcagctgaggcaggccattgccgaggccgagcagagcttgctgacatctgttcgtccatgggtgaaaccgcccatgcacgttagactggtttgtttctacctccaccaggcgaaggaagaaaaggagatttag |
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| Protein seq | MENLFCFCGDTTGRGSDRRRGHRWLTAYMGMWDNSGEPDTVRDRILLELEQEFLEVYRTKIDKVNQSRVQLRQAIAEAEQSLLTSVRPWVKPPMHVRLVCFYLHQAKEEKEI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0032320 | OsLiXu_Ung0032320.01 | ChrUN-Ctg237 | 293651 | 295596 | + | NAM | ||
| CDS seq | atggagaacctgttttgcttctgcggcgacaccacgggaagggggtcggaccgtcgaagagggcatcgatggctgactgcttatatgggaatgtgggataattccggtgagcccgacacggtgagggataggatactgttggagctcgagcaggagttccttgaggtctacaggacaaaaatcgacaaggtgaaccagagccgggtgcagctgaggcaggccattgccgaggccgagcagagcttgctgacatctgttcgtccatgggtgaaaccgcccatgcacgttagactggtttgtttctacctccaccaggcgaaggaagaaaaggagatttag
More
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| Protein seq | MENLFCFCGDTTGRGSDRRRGHRWLTAYMGMWDNSGEPDTVRDRILLELEQEFLEVYRTKIDKVNQSRVQLRQAIAEAEQSLLTSVRPWVKPPMHVRLVCFYLHQAKEEKEI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009320 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009220 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0224700 | SBH | 0 | 0.5230365 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009360 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0242600 | SBH | 0 | 17.251445 | 0.091721 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009150 | SBH | 0.0 | 0.316345 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012350 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
