Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0031540 | OGI:99036520 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg234:194246-197214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacagctccagcgccacgtagccccgcgtgccccgcatgccggtcatcgtcaggtgggtattgtcacggttgcagagcttggcaagccttggtgttagcatcctttgctccaattcaaatagcaaccatatatgcttcaacactcaaatatttggaggaacaaaagaagaaatgggggatacaagtcgctagtaacacaggaatgaggaggaggaggaagaagagaagtagatcgacgagggatgcccaccggccgcccaggtcaccgccgccgccgtgagcctcagctcgccaaattgatcaatcgatgcccccatgttttctgttgctgctcatatatgccggtagtggtgcttgcttgggcctgggctggaacatgactaaccgagcccatggtgcagcctagtagaggccctgacaatcccctcttcttaaaatttggcttgtccccaagccaatgaaagaaacctcttggatcccatggtacctttagtcctttaggctgcaaaaactttgcttccagcagataactaattgttgatataaaagctgcattccttggtaaaatctgaatttgctctgtgataagataaaaaaaatgcatgtttgatagattgcagaggctctgaaatcaccatcttagtctgaaagcttgcccaatggttgccactaaaatcttcatcttgtttcttgactaccaaacgatttctagcctccacatcccaaattaagttggcagctattgatttaatcacctggagcatggaaattgattcacatatagagagcttgagtgtgctcctatatccttgtgcaactcttctatggtacagtagagctgcagcattaaggaactgaagcagaaccccgccagagtccaaatgcacctccaagttccatgtcagatcaaaccgaaccattatgtctgaacaatgggacaagcttaatgacttgatatgctcttgcttagtgaaggaaagggcatttggaatagagtgaacttgtagcttggatagcaatgacctcaaagatccatcatgaattaatgcttttgggttaatacacatctgcccaggacttgcatcttcaaatatacattgcagctctttgttgctcaactgtctttccttcataatacgagcaaattccttagatataatatgagcaagttccatagattggctattcatatgatgcccttgcattgcaagaccatagacctctcttccctccatcccccatgccaaagaacttactagacttggtggaggccatggtttcaacccagccatctcctgtgttaaaatcacggttccaatgactaaaactccaatatcaaaaggctcccatgccaggaagcttactccagccggtggtggccatgggggcatcaatggtaaaccttccaaatataatttggatcctagccaatgcaaaggttgcaactcccatcgtctaatcactccacccaaccaaaaaggtggccatgaatttctcttagcattccccattagcagcttcttgtctttgggacatttcatcgaacacccactgggcagcaatggaataagatccatttcagccatcaaccatggcgagaagactttggatgatgcatcaggtactagaacgccctcgggcacacccatcatggtccgacacgtgaccctggtatggtctgcgccacccttgacatcaaggccaaccgtcgaacagttggcgggcatcaccttggtactatcaagggtgtcgatgtgggtgtcgtcgatggtgctgccagtagctaccatcttcattgatgactccacagaagtggcacaagtaaccacagcagccacagtgagatcaggcttggtgtcgaagctagaacatatcatcgaacacatagtgggcgtgaactcagaaaggtccttgatgacaatgaagggcatgtgatccttgccctcaccatcctcatgctccaggatgacagtcggagcagtcccctcgttgatgtagatggatctcgatattgtgctcgagctactatcattggggcattccatcaaacagttggtgtgcactggaaggggtggtgccattggtgttggagatgatgcacccttgaggatgacggtggttgccctgatggcagcaatcatttcctcggaaaccttgctcctacgaacctctatcttctccaacttttgaaatatctaattgatcttctcctcttgcatgcgcttggcctccatttgttcaaacttctccaatatccgatctagagctttgtctagccatttctcctttttgttcatggtagaattgatggggacaggcttaggatatcctctgattttctttgggcatctcagattggctaggcattccatcgaacaggttgtgggtgtcggtgttatgagcagcacccttgcccaaatctaacaaccacttgcatggggcgttgctgcagtactctcccatcaactccatgctagaaatcccatgaatcgacagctctgataccagattgttagcaccctttgctccaattcaaatagcaaccatatatgcttcaacactcaaatatttggaggaacaaaagaagaaatgggggatacaagtttctagtaacatagaaaggaggaggaggaggaagaagagaagtagatcgacaagggatgcccaccggccgcccaggtcgccgtcgtcgccgtgagcctcagctcgccaaattgatcaatcgatgcccccatgttttctgttgctgctcatatatgctggtagtggtgcttgcttgggcctaggctggaacatgactaaccgaacccatggtgcagcccagtagaggcccttacacttgggcgcgtagtacatcggcggtgagcagcaccttgcccagcttgatgttgtaatgcatgatccagtgctggaactcctcgtgcaggtacctcaccggccttgcacaccatgccaccgccgctgccat
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| CDS seq | atggcagcggcggtggcatggtgtgcaaggccggtgaggtacctgcacgaggagttccagcactggatcatgcattacaacatcaagctgggcaaggtgctgctcaccgccgatgtactacgcgcccaagtcttcgacaccaagcctgatctcactgtggctgctgtggttacttgtgccacttctgtggagtcatcaatgaagatggtagctactggcagcaccatcgacgacacccacatcgacacccttgatagtaccaaggtgatgcccgccaactgttcgacggttggccttgatgtcaagggtggcgcagaccataccagggtcacgtgtcggaccatgatgggtgtgcccgagggcgttctagtacctgatgcatcatccaaagtcttctcgccatggttgatggctgaaatggatcttattccattgctgcccagtgggtgttcgatgaaatgtcccaaagacaagaagctgctaatggggaatgctaagagaaattcatggccacctttttggttgggtggagtgattagacgatgggagttgcaacctttgcattggctaggatccaaattatatttggaaggtttaccattgatgcccccatggccaccaccggctggagtaagcttcctggcatgggagccttttgatattggagttttagtcattggaaccgtgattttaacacaggagatggctgggttgaaaccatggcctccaccaagtctagtaagttctttggcatgggggatggagggaagagaggtctatggtcttgcaatgcaagggcatcatatgaatagccaatctatggaacttgctcatattatatctaaggaatttgctcgtattatgaaggaaagacagttgagcaacaaagagctgcaatgtatatttgaagatgcaagtcctgggcagatgtgtattaacccaaaagcattaattcatgatggatctttgaggtcattgctatccaagctacaagttcactctattccaaatgccctttccttcactaagcaagagcatatcaagtcattaagcttgtcccattgttcagacataatggttcggtttgatctgacatggaacttggaggtgcatttggactctggcggggttctgcttcagttccttaatgctgcagctctactgtaccatagaagagttgcacaaggatataggagcacactcaagctctctatatgtgaatcaatttccatgctccaggtgattaaatcaatagctgccaacttaatttgggatgtggaggctagaaatcgtttggtagtcaagaaacaagatgaagattttagtggcaaccattgggcaagctttcagactaagatgcaaaggatgctaacaccaaggcttgccaagctctgcaaccgtgacaatacccacctgacgatgaccggcatgcggggcacgcggggctacgtggcgctggagctgtag
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| Protein seq | MAAAVAWCARPVRYLHEEFQHWIMHYNIKLGKVLLTADVLRAQVFDTKPDLTVAAVVTCATSVESSMKMVATGSTIDDTHIDTLDSTKVMPANCSTVGLDVKGGADHTRVTCRTMMGVPEGVLVPDASSKVFSPWLMAEMDLIPLLPSGCSMKCPKDKKLLMGNAKRNSWPPFWLGGVIRRWELQPLHWLGSKLYLEGLPLMPPWPPPAGVSFLAWEPFDIGVLVIGTVILTQEMAGLKPWPPPSLVSSLAWGMEGREVYGLAMQGHHMNSQSMELAHIISKEFARIMKERQLSNKELQCIFEDASPGQMCINPKALIHDGSLRSLLSKLQVHSIPNALSFTKQEHIKSLSLSHCSDIMVRFDLTWNLEVHLDSGGVLLQFLNAAALLYHRRVAQGYRSTLKLSICESISMLQVIKSIAANLIWDVEARNRLVVKKQDEDFSGNHWASFQTKMQRMLTPRLAKLCNRDNTHLTMTGMRGTRGYVALEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0031540 | OsLiXu_Ung0031540.01 | ChrUN-Ctg234 | 194246 | 197214 | - | NAM | ||
| CDS seq | atggcagcggcggtggcatggtgtgcaaggccggtgaggtacctgcacgaggagttccagcactggatcatgcattacaacatcaagctgggcaaggtgctgctcaccgccgatgtactacgcgcccaagtcttcgacaccaagcctgatctcactgtggctgctgtggttacttgtgccacttctgtggagtcatcaatgaagatggtagctactggcagcaccatcgacgacacccacatcgacacccttgatagtaccaaggtgatgcccgccaactgttcgacggttggccttgatgtcaagggtggcgcagaccataccagggtcacgtgtcggaccatgatgggtgtgcccgagggcgttctagtacctgatgcatcatccaaagtcttctcgccatggttgatggctgaaatggatcttattccattgctgcccagtgggtgttcgatgaaatgtcccaaagacaagaagctgctaatggggaatgctaagagaaattcatggccacctttttggttgggtggagtgattagacgatgggagttgcaacctttgcattggctaggatccaaattatatttggaaggtttaccattgatgcccccatggccaccaccggctggagtaagcttcctggcatgggagccttttgatattggagttttagtcattggaaccgtgattttaacacaggagatggctgggttgaaaccatggcctccaccaagtctagtaagttctttggcatgggggatggagggaagagaggtctatggtcttgcaatgcaagggcatcatatgaatagccaatctatggaacttgctcatattatatctaaggaatttgctcgtattatgaaggaaagacagttgagcaacaaagagctgcaatgtatatttgaagatgcaagtcctgggcagatgtgtattaacccaaaagcattaattcatgatggatctttgaggtcattgctatccaagctacaagttcactctattccaaatgccctttccttcactaagcaagagcatatcaagtcattaagcttgtcccattgttcagacataatggttcggtttgatctgacatggaacttggaggtgcatttggactctggcggggttctgcttcagttccttaatgctgcagctctactgtaccatagaagagttgcacaaggatataggagcacactcaagctctctatatgtgaatcaatttccatgctccaggtgattaaatcaatagctgccaacttaatttgggatgtggaggctagaaatcgtttggtagtcaagaaacaagatgaagattttagtggcaaccattgggcaagctttcagactaagatgcaaaggatgctaacaccaaggcttgccaagctctgcaaccgtgacaatacccacctgacgatgaccggcatgcggggcacgcggggctacgtggcgctggagctgtag
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| Protein seq | MAAAVAWCARPVRYLHEEFQHWIMHYNIKLGKVLLTADVLRAQVFDTKPDLTVAAVVTCATSVESSMKMVATGSTIDDTHIDTLDSTKVMPANCSTVGLDVKGGADHTRVTCRTMMGVPEGVLVPDASSKVFSPWLMAEMDLIPLLPSGCSMKCPKDKKLLMGNAKRNSWPPFWLGGVIRRWELQPLHWLGSKLYLEGLPLMPPWPPPAGVSFLAWEPFDIGVLVIGTVILTQEMAGLKPWPPPSLVSSLAWGMEGREVYGLAMQGHHMNSQSMELAHIISKEFARIMKERQLSNKELQCIFEDASPGQMCINPKALIHDGSLRSLLSKLQVHSIPNALSFTKQEHIKSLSLSHCSDIMVRFDLTWNLEVHLDSGGVLLQFLNAAALLYHRRVAQGYRSTLKLSICESISMLQVIKSIAANLIWDVEARNRLVVKKQDEDFSGNHWASFQTKMQRMLTPRLAKLCNRDNTHLTMTGMRGTRGYVALEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g18810 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011950 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011830 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011860 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011910 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012020 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0174600 | SBH | 0.008916 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011490 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0171100 | SBH | 0 | 0 | 0.0052655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012040 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011880 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011730 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011770 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011660 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012000 | SBH | 0.0 | 0.0 | 0.0 |
