Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0030870 | OGI:06026000 | 12/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg231:327864-329656 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagctggtagctgttgaagatgccatcggcgcaacctacaccaacaatcacaaccatcccaaggtgatgcccgccaagtgttcgatgaattgttccacccctaacctcaccgtggctgcgatggtttcgtgcacgtccacttctctggcctccatttgtcaggacatcacatgcaccaccgacatcgacgcccttgtttgtcccaaggagacacacatcaagtgttcgacattgagcctcgacgtcaagggtggcatccatgaccaagctgaggtcatgttccaggccatgacggctgcgtccaggtagttccagcatatgtccagtctatggacaacttctcatcaaggatgaatgccaaccgcaagctggccacattgacacccgcaagatgttcagtgaaatggcatggtccgcacaagcactttgatgtcaatccatggccacctccaaactttaacgcatcagattcgagcaggtggtttggaatcctgattgacaagcattttccactaggggaaccactgaaacacttacatatcatgttggtgccattagtgtgggatcctggtgatagcaaagttcacctacacaagattttgttgaatgattggcttcaatgccaatactttcacctgggagataattgctggaacattgagcttgttatcagtgtcggagttcctgaagagttgtgtgtgtgggtcagctatatagcagttgctaagaaggaagcatgtgtggatcagaacaagggggtatcatatagtgaagaaatgagattctggtgtgaattgtattcacattgctatatatctgctcgactaattgggaaggggaactacatcctggagccatctaaagatcaaccaacttgtttgggtccacagaattttgagaaaggttcattcctattcactactattgatgatgttgataggtataatcttgacattggtactgtagtaagattatttgctgggaatttgaaggagttagtgaaacatggaagggggtttgacattggaatttctatcatgcaagagcaaattgatggacaaggaattcatatggtttggtttccaggagtaaaatgctcatttaaattgaggttgaacacttgttgggtcatttgtcatttggagcctgtctctatgatctttgtccttgctccactaaaatgtggttcttttcttgaggcatggagtccagaaaatgcacccttacttgatgagagctgggttgaactgaagcaattgcagtcatgtgttcagattgaacagcacaagtatgctggactagcatctgagcctacaacctttggtttccacattaaaatctcaagggaattagcatgtgtgcatgctgatttatttcagactgctctagttatccagccacaaaggaattcctgcactaatataaagattcatgatgttttagttgagctctccttcattaaacaagagcattccaagttattaaaattgttccaatatctgcacatactagctctgttgggttggacattgattgctaaaatggaggtgcatctggactttaatggggctccaccttgtttacttaTtgctgccgctagaatatctgcacaaggacatacaagcacactagggctcttgaaaggtgaatcaatttcaatgctacagatacagtgggatctagaattcagtgctattatgtgcttcagctacatattattggtctattatactgaagaatggttttggccgatggaaaatgaaaggaataaagaaaagtgcaatcaataa
More
|
||||||||||
| CDS seq | atggagctggtagctgttgaagatgccatcggcgcaacctacaccaacaatcacaaccatcccaaggtgatgcccgccaagtgttcgatgaattgttccacccctaacctcaccgtggctgcgatggtttcgtgcacgtccacttctctggcctccatttgtcaggacatcacatgcaccaccgacatcgacgcccttgtttgtcccaaggagacacacatcaagtgttcgacattgagcctcgacgtcaagggtggcatccatgaccaagctgaggtcatgttccaggccatgacggctgcgtccaggatgaatgccaaccgcaagctggccacattgacacccgcaagatgttcagtgaaatggcatggtccgcacaagcactttgatgtcaatccatggccacctccaaactttaacgcatcagattcgagcaggtggtttggaatcctgattgacaagcattttccactaggggaaccactgaaacacttacatatcatgttggtgccattagtgtgggatcctggtgatagcaaagttcacctacacaagattttgttgaatgattggcttcaatgccaatactttcacctgggagataattgctggaacattgagcttgttatcagtgtcggagttcctgaagagttgtgtgtgtgggtcagctatatagcagttgctaagaaggaagcatgtgtggatcagaacaagggggtatcatatagtgaagaaatgagattctggtgtgaattgtattcacattgctatatatctgctcgactaattgggaaggggaactacatcctggagccatctaaagatcaaccaacttgtttgggtccacagaattttgagaaaggttcattcctattcactactattgatgatgttgataggtataatcttgacattggtactgtagtaagattatttgctgggaatttgaaggagttagtgaaacatggaagggggtttgacattggaatttctatcatgcaagagcaaattgatggacaaggaattcatatggtttggtttccaggagtaaaatgctcatttaaattgaggttgaacacttgttgggtcatttgtcatttggagcctgtctctatgatctttgtccttgctccactaaaatgtggttcttttcttgaggcatggagtccagaaaatgcacccttacttgatgagagctgggttgaactgaagcaattgcagtcatgtgttcagattgaacagcacaagtatgctggactagcatctgagcctacaacctttggtttccacattaaaatctcaagggaattagcatgtgtgcatgctgatttatttcagactgctctagttatccagccacaaaggaattcctgcactaatataaagattcatgatgttttagttgagctctccttcattaaacaagagcattccaagttattaaaattgttccaatatctgcacatactagctctgttgggttggacattgattgctaaaatggaggtgcatctggactttaatggggctccaccttgtttacttaTtgctgccgctagaatatctgcacaaggacatacaagcacactagggctcttgaaaggtgaatcaatttcaatgctacagatacagtgggatctagaattcagtgctattatgtgcttcagctacatattattggtctattatactgaagaatggttttggccgatggaaaatgaaaggaataaagaaaagtgcaatcaataa
More
|
||||||||||
| Protein seq | MELVAVEDAIGATYTNNHNHPKVMPAKCSMNCSTPNLTVAAMVSCTSTSLASICQDITCTTDIDALVCPKETHIKCSTLSLDVKGGIHDQAEVMFQAMTAASRMNANRKLATLTPARCSVKWHGPHKHFDVNPWPPPNFNASDSSRWFGILIDKHFPLGEPLKHLHIMLVPLVWDPGDSKVHLHKILLNDWLQCQYFHLGDNCWNIELVISVGVPEELCVWVSYIAVAKKEACVDQNKGVSYSEEMRFWCELYSHCYISARLIGKGNYILEPSKDQPTCLGPQNFEKGSFLFTTIDDVDRYNLDIGTVVRLFAGNLKELVKHGRGFDIGISIMQEQIDGQGIHMVWFPGVKCSFKLRLNTCWVICHLEPVSMIFVLAPLKCGSFLEAWSPENAPLLDESWVELKQLQSCVQIEQHKYAGLASEPTTFGFHIKISRELACVHADLFQTALVIQPQRNSCTNIKIHDVLVELSFIKQEHSKLLKLFQYLHILALLGWTLIAKMEVHLDFNGAPPCLLIAAARISAQGHTSTLGLLKGESISMLQIQWDLEFSAIMCFSYILLVYYTEEWFWPMENERNKEKCNQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0030870 | OsLiXu_Ung0030870.01 | ChrUN-Ctg231 | 327864 | 329656 | + | NAM | ||
| CDS seq | atggagctggtagctgttgaagatgccatcggcgcaacctacaccaacaatcacaaccatcccaaggtgatgcccgccaagtgttcgatgaattgttccacccctaacctcaccgtggctgcgatggtttcgtgcacgtccacttctctggcctccatttgtcaggacatcacatgcaccaccgacatcgacgcccttgtttgtcccaaggagacacacatcaagtgttcgacattgagcctcgacgtcaagggtggcatccatgaccaagctgaggtcatgttccaggccatgacggctgcgtccaggatgaatgccaaccgcaagctggccacattgacacccgcaagatgttcagtgaaatggcatggtccgcacaagcactttgatgtcaatccatggccacctccaaactttaacgcatcagattcgagcaggtggtttggaatcctgattgacaagcattttccactaggggaaccactgaaacacttacatatcatgttggtgccattagtgtgggatcctggtgatagcaaagttcacctacacaagattttgttgaatgattggcttcaatgccaatactttcacctgggagataattgctggaacattgagcttgttatcagtgtcggagttcctgaagagttgtgtgtgtgggtcagctatatagcagttgctaagaaggaagcatgtgtggatcagaacaagggggtatcatatagtgaagaaatgagattctggtgtgaattgtattcacattgctatatatctgctcgactaattgggaaggggaactacatcctggagccatctaaagatcaaccaacttgtttgggtccacagaattttgagaaaggttcattcctattcactactattgatgatgttgataggtataatcttgacattggtactgtagtaagattatttgctgggaatttgaaggagttagtgaaacatggaagggggtttgacattggaatttctatcatgcaagagcaaattgatggacaaggaattcatatggtttggtttccaggagtaaaatgctcatttaaattgaggttgaacacttgttgggtcatttgtcatttggagcctgtctctatgatctttgtccttgctccactaaaatgtggttcttttcttgaggcatggagtccagaaaatgcacccttacttgatgagagctgggttgaactgaagcaattgcagtcatgtgttcagattgaacagcacaagtatgctggactagcatctgagcctacaacctttggtttccacattaaaatctcaagggaattagcatgtgtgcatgctgatttatttcagactgctctagttatccagccacaaaggaattcctgcactaatataaagattcatgatgttttagttgagctctccttcattaaacaagagcattccaagttattaaaattgttccaatatctgcacatactagctctgttgggttggacattgattgctaaaatggaggtgcatctggactttaatggggctccaccttgtttacttaTtgctgccgctagaatatctgcacaaggacatacaagcacactagggctcttgaaaggtgaatcaatttcaatgctacagatacagtgggatctagaattcagtgctattatgtgcttcagctacatattattggtctattatactgaagaatggttttggccgatggaaaatgaaaggaataaagaaaagtgcaatcaataa
More
|
|||||||
| Protein seq | MELVAVEDAIGATYTNNHNHPKVMPAKCSMNCSTPNLTVAAMVSCTSTSLASICQDITCTTDIDALVCPKETHIKCSTLSLDVKGGIHDQAEVMFQAMTAASRMNANRKLATLTPARCSVKWHGPHKHFDVNPWPPPNFNASDSSRWFGILIDKHFPLGEPLKHLHIMLVPLVWDPGDSKVHLHKILLNDWLQCQYFHLGDNCWNIELVISVGVPEELCVWVSYIAVAKKEACVDQNKGVSYSEEMRFWCELYSHCYISARLIGKGNYILEPSKDQPTCLGPQNFEKGSFLFTTIDDVDRYNLDIGTVVRLFAGNLKELVKHGRGFDIGISIMQEQIDGQGIHMVWFPGVKCSFKLRLNTCWVICHLEPVSMIFVLAPLKCGSFLEAWSPENAPLLDESWVELKQLQSCVQIEQHKYAGLASEPTTFGFHIKISRELACVHADLFQTALVIQPQRNSCTNIKIHDVLVELSFIKQEHSKLLKLFQYLHILALLGWTLIAKMEVHLDFNGAPPCLLIAAARISAQGHTSTLGLLKGESISMLQIQWDLEFSAIMCFSYILLVYYTEEWFWPMENERNKEKCNQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g16140 | RBH | 0.325891 | 0.024659 | 0.045285 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006580 | SBH | 0.000000 | 0.000000 | 0.512906 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019830 | SBH | 1.378538 | 2.567137 | 2.327668 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006440 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011130 | RBH | 0.141049 | 0.0 | 0.630300 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0152100 | RBH | 0.515463 | 0.665861 | 0.5155465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0149100 | RBH | 0.8197075 | 0.624525 | 4.2110455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010960 | RBH | 0.025586 | 1.683969 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006520 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010890 | RBH | 0.0 | 1.151743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024840 | SBH | 0.069682 | 1.076814 | 0.286169 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024680 | SBH | 0.0 | 0.000000 | 0.0 |
