Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0028140 | OGI:99034070 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg219:283539-291059 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcccgcatatcttcataaagcatttagagcatcgacatacctgaaaagaagggcaaaggtttggttacttcgtaattcaaaggcaaatagtcatagagaattgatataactgaaagattacgggcctgttcattttgatgccattttcaaccataccattttttggtaaagttgcaaaaattttgggcacgtttaatttgttgccaaattttaataagtacatatgaaatcttaccaaaattttagcaatcttatcaaaatttggcaatgccaaaacttggtaaggttgaaaatgttagcgaagtgaacaagccctacttttctaagggcaagttttccgaggagaatcggcttcttgttgcatgggcatcgagattcacgatgtaggtgtcttcaggttgggcacaaaagcattaattagactatcagagcatcagaaaactttctgatacattatctaaaaaaacaaaactttctgaaattccgctgtatgctgtagctctacagaaacttgaggctaaaatttcccctaaaggctctatggtgagatttatatctattgttggaaaatggaaatgaatgattctcccatatatagcgacagggtcctaataagtaacagaacagtatagttaatatggtcaactagaaactattcacatggtcaactagaaactatcttgtaaagaatttttgtcctatgttctccaatatgaaattaaactactgtgaagaactagatgtctatatcagaattacacatcacaagcactcttcttctttatcaggtcattgaccgaagaaaaatcttcataatcaatatgtttcttaccatagaggcacgaaccaatgaaatcaccatagttaataacaccagcttaacccgcactacaacgcataaggaaagaaaggcttgtaataagaaaagaagcaagcaaaaattaggtttcaagccaattaaaactcctacatagataaagcctcacctgatagtcgtgtgatgtgatgtgaagtcatgtaacaatgtatctcatgttcctgacaagattagtgcatgagtgcaacagataagcaagaataattgaattgcaggggtttatactaagctggtttcattcacccccatcaggcagcaacatgctcacacaatctggaggaataatatatcagatcttctgcgttatcaaatcaccaataaaatctgtgagacaagaacaaagcagtttttttaccagtttgaattagtgcatcaaatacaactctaattttgaaattaaagtatctttaccaattgaaacatgaaagaacttacttaaaatatcacgtgaggttttgttgttttgcatcccagtgtcacagagtgaaatatgctatcttcaccatttgttcatctctgcaaagaaactatacaaattttatatgaagccataaagttgtaggttagacattgtagaaaatgacatgatagaacatcattcccatatgagctgtccaatcaactgcgatcaactaacctcggatgaaacaatcaaatactatgttctctaaagaacaaacttcgatcgcactacctaatgtgagcaatgaacaccacggtaatatcaccattgcttctcactgatgtaggcaaatctgacactaagtaaagcaaatactacttcagaacctcctgtgtgctttgttgtttaacaaatttccctctccgaggtccttttagatctctttgctatggcaagaccctgttttttcattttctccaatttttctttccttccttttatatcagctttaataacttcatccctgctttcttctgacaatagagctagtctggaaaacttctttggccatacttctccaagtcgctcatgtatatctttaaatacaggtacaagaccggctctcataaaatatccttcagtaagcttcattgagttcgttttaggaagagcgggagcatctttcaactcaaggtccaggcaaaaaggagagtctttcagccacatcttaagagagtaagccttcaccacaaagcgacctgaccgacttctgcatggtaggaaaggggagcccatttccaaaaggtaagccctgatagttttacgcaaggataccatgttatattccccctctcctgtgaccaatacaatagatttgggggattctggtgcaccctgcagtgaagcatcctatacaagcagagtatatcagatgtaatgtttaaaaagggagagttaagaaatcaacaaaacaaaagcccatccaaacaaaatattaactataaaggaaaacttgatacgtattaaattcattcgcaatacaaccattcaagctttttaggggaatattcaggttgccgctaattggtagattcaacaatatttgtgccctcgatatggacaaaaattaatttgtgcttcaagccgatagactagcaaaaaaggaggacaatgcttcatcatgttactgtcacaaaacctatcacgattctctacgtgaaaattgcatacaatgtcaaacaaaggtagaaatgcattagacactacaactgagataaatagcctacattccacacattttacttgtctgtagtcacttcattcttcttaatttatagttcatttgactcaaaagtgtgtgctgtactgtccatagtcatgacaatggcaaaaaaacaatacactataagtaaagctagtgaacaaactttactatttctccactcaaaacaagtttttaatctttgatttggtctctttcaatcaactaatgcaacaccatataaaaattaatattatttttaagacctacttgcatctgatcaagccacaatgttagagcaacaagagcagccccagcagacaacttgcgtaagtcagctccccaatctttttcttccactctgagccattcaccaagaaaatgattaatcaatacagtagaaacaatcgttccgctttggatttaccaatactcataatcataaggaaattaaacctagtcatctagaattacgtaagcaatttcaactcataaacaaaggcatgtgaagaaatggaaagtcccctaaaagatcaaggtaaggccaagtatcataaaaaatcatcagatattgtcctcatccccatccattccatccatggactgtcatcctcaccctcatgctctcctcccctctactgttcactagcaaggacttcctctcacgaagaggaaggtccctgccatgttgttgggacaatttgttccaacagatacaaataaaacgaagcAaaaaataagaccagaccatgttagtcaaacgtttcagctatcgtagtgttgaagaacacaccaatgtaagaatactatagcagattgactctttgagatgacacctagactcatattgctagccagttgcctgtctgggccatctgtgggccaaacatgttataagctaactacttgttttatagctcttgaatgtccagattaaaaaaataaaaataaaacatcaatgtatcttatggctggattttctggctcacttattttgcaattaatgttgttcacgaagtcactgtaatttatcggcttcttcgtgtgcacaggtgtgcatgtgaaccaaaagtggaactctgctagtgggtacctataatggtcaagtaaactggaaatgctgcatctggcatgctgaatctgaaaatagagcatagcctcaaatgaaaatcttcggagttagagattgttgcaaataccgaaagatattatgatggtatatgcttctttttacagccaattggaaaatccatgaagcggttgctcgacgttcaaatgcccataacaggtcttccagtgcatttacaaagttcaatgaagcagaatcttctagtgtcccaagtttttctagaaagctgtcaacctcagtaaacagagacgaagtcctctcagtaaggagcctgcagaagatgtaagatttaatcactgatgaagaaaaaaaatacggaacattatgaacataatcaagtacaatatcaacctaatgggaaggtcaaatccacaatcctgcaaagactttagaagaagaatggcatcatcagtctgctcgcacaaactagcagccctgatgaaacttgtccagacttgatgatctggttctacaccatctcttttcatttctaaaagctttgtgattccaagactgtagtcacgatttctcaagtaagcatcgagaacagtactgtatggtaaagtgctaatttccaaattagaagatttcaagctgttcaggactttctcagcttcgtctgggtgcccagaagtcccataagaagtcatgaggatatgcatagtagcgatggttggttcaatcccatcctctttcattgctgatagtaagtgctcggctttggaatggttgcgggcattcctatatattttcatcatcatgtggtagatagatctatttaaccgatatccctttgttctcatttcttcaaaaagcaggtcagcttgctcccagagtttagcttttccagatgcagcaagcaagattttgtaggattctaacttgggtgtcaaaccccgtttacccatttcatacaagagagtaaaaccttcttcaggcctaaagtttctactgtacatgactataagagtattatatgtatcctcatcaggctctaatccagcttccagaatactatgatatacttctattgtcctgtcaaagtttcctgtcccagtatacattaaaagaagggtattaagtaccacgagatctggtttgaatcctgctccctccatctctgcaaccatcaattcgacatctctgaatcgtttattatggcagagcaaggtgatcataattctgtagaggtgcatatttggcaagtatcctgcagccttcatcccattatatattttcattacctcgaatacatccccagcttttgcaaaagcttcaagcataaggagtactgtgcttttgctgatcttgatgtctaaatcttgaagctcctgaacaaccacatacaactcatccagcctgccatcaacaatcaatgctctcatcattccattaactgattcaacagttggtagaggaccctttttaatcataatgtcaaagattgcccttgcatgctcataaaggccactctcagcatatgcatgtattaaagcattccaaatccttctatcaacaccagattcctgcttcaatcctttcacaaaattttctgcctgctgccagagttttaacttaccatacgcttcaatcattgctactctgcatgaaagaatgttcaaggaaatatcagatcgcgcagcatcatccatcaattgataagccgtttctgggaaacccaatctgcagcatgtgtaaattatactctggtatatcttttgggaaggaactatgccaagaaactgcatatcgcagaacacttgacaagattcgggaaataactcagcctcctcaaggtaagtaatcaagtactcatacaagtcgcagtcttgaccaaaggatccacgttttaacatttgttttctactgtactcctgaatggcatcaacaatcttcccatttttgcacaaaagcatgatcgagcattcagatattaagttgtgggagttgggaacatgctgccggatccattcaagcaaagagagacctttttcatgcttacccattttttcatatgcgtctaaaatggacagtaggctcttaccgtcaggctcatatccttggaggcatgccctctttaacagactagcaccctgagaaatgcattcagccttgatgagtatactggatattactagtggattcatttcaaaaacggcctccatgtcttggataactccttcaatctcatcgtgttcatttccctttgcgagtgcagcaagcaagacctgatataaaccatcatctggcttatatccatccttgatcatagcccggtacagaaccatcagctttctagtctcatcagaccttgcaaaaacatctaacataaccaaataggctaaacgatcaggtttgacacctgactcaaccatacgatcaaatgtacgctccgcatcatcctgcctcccacttttggcgtatgcacatatcaaagcactgaaagttaacaaagttggctttaatcctgcatcagccatctcctccagcaccttccctgcctcagaaatcctatccatcttccctaaagaatcaaccaaaacagtataggtcacagcatctggagtgcagcctatagccctcatctcatcatacaacccaagagccaagtcaagcctgcccatctttccatacatatgaatcatggtattataagtaatcccatccttcctgaaaccagccttaaccaattcctcacacacacgctccaccctctccacatcgccttccttcgcgaaagcataaaggagcgagttgtatgtgactgcatccggctgaaaacccttctcaaccagctccttaaacatcagctcagcctcctgtgccttcccgcaccggccatgcatggagaccatggcattgtacgtccacaaatctggccgacactctgaagctatcatctcctcaaacaccgccactgcatcatccaaattagaaccttgtgagcaagcactgatgagggtgttgtaagtgatagcatccggtctcagcccagcttgccggacttcatgtaggagctcaagagcgacaccagcggccaaacacccagacttggccctggcattgataagggtattgaagctaacgaggtcaggctcgatgtcctggtcacgcattgcgtcaagcagctggcgcgcgtcgtcgaagcggccagaacgagcgtagacgcccatcatggcattgaacacctgcacggtggcaccctcgcgggcgaaccggaggaagacatcctccgcgagcgcgtcctggcgggcgcgcccgaggacgccgaggacgacggcgacgacgcgggggcccggggcacgcccgccgccgctcgcgacgagccactcgaaggcgtcgagcgcgcgccgccaggacgccacccccaccgcgcgcacgacgaacgcgagctcgtccggcgcggggcgcgcgccgtcgagcacgtccccgacgggcgcgccgggagccagcgccaggacgcggtccgcgaggcccgcgacgcgcgcgcgccagtcccgcgcccgccgcagcgcgagcttgctgagcttcttcaccctcccgcggtgcgcccgcgcgtcgagcggctcgagggcggcggcggaggcggcggccgacgagggccccgccgccgcctcctcctcctctcctccctccgagggcctcgccacgggcgcggcggggaagcgaggcgaggggaggtgggggaagcggaggtgtggccagcggacggaggggtcggcgagggggtagtcgaaatcatccggcgccgcggccgcggccgtggcgacggtggcgcggcggatgtggcgcgaggaggtggaggtggaggtggagaggaagggttgggaggcgacggccatgagaggcat
More
|
||||||||||
| CDS seq | atgcctctcatggccgtcgcctcccaacccttcctctccacctccacctccacctcctcgcgccacatccgccgcgccaccgtcgccacggccgcggccgcggcgccggatgatttcgactaccccctcgccgacccctccgtccgctggccacacctccgcttcccccacctcccctcgcctcgcttccccgccgcgcccgtggcgaggccctcggagggaggagaggaggaggaggcggcggcggggccctcgtcggccgccgcctccgccgccgccctcgagccgctcgacgcgcgggcgcaccgcgggagggtgaagaagctcagcaagctcgcgctgcggcgggcgcgggactggcgcgcgcgcgtcgcgggcctcgcggaccgcgtcctggcgctggctcccggcgcgcccgtcggggacgtgctcgacggcgcgcgccccgcgccggacgagctcgcgttcgtcgtgcgcgcggtgggggtggcgtcctggcggcgcgcgctcgacgccttcgagtggctcgtcgcgagcggcggcgggcgtgccccgggcccccgcgtcgtcgccgtcgtcctcggcgtcctcgggcgcgcccgccaggacgcgctcgcggaggatgtcttcctccggttcgcccgcgagggtgccaccgtgcaggtgttcaatgccatgatgggcgtctacgctcgttctggccgcttcgacgacgcgcgccagctgcttgacgcaatgcgtgaccaggacatcgagcctgacctcgttagcttcaatacccttatcaatgccagggccaagtctgggtgtttggccgctggtgtcgctcttgagctcctacatgaagtccggcaagctgggctgagaccggatgctatcacttacaacaccctcatcagtgcttgctcacaaggttctaatttggatgatgcagtggcggtgtttgaggagatgatagcttcagagtgtcggccagatttgtggacgtacaatgccatggtctccatgcatggccggtgcgggaaggcacaggaggctgagctgatgtttaaggagctggttgagaagggttttcagccggatgcagtcacatacaactcgctcctttatgctttcgcgaaggaaggcgatgtggagagggtggagcgtgtgtgtgaggaattggttaaggctggtttcaggaaggatgggattacttataataccatgattcatatgtatggaaagatgggcaggcttgacttggctcttgggttgtatgatgagatgagggctataggctgcactccagatgctgtgacctatactgttttggttgattctttagggaagatggataggatttctgaggcagggaaggtgctggaggagatggctgatgcaggattaaagccaactttgttaactttcagtgctttgatatgtgcatacgccaaaagtgggaggcaggatgatgcggagcgtacatttgatcgtatggttgagtcaggtgtcaaacctgatcgtttagcctatttggttatgttagatgtttttgcaaggtctgatgagactagaaagctgatggttctgtaccgggctatgatcaaggatggatataagccagatgatggtttatatcaggtcttgcttgctgcactcgcaaagggaaatgaacacgatgagattgaaggagttatccaagacatggaggccgtttttgaaatgaatccactagtaatatccagtatactcatcaaggctgaatgcatttctcagggtgctagtctgttaaagagggcatgcctccaaggatatgagcctgacggtaagagcctactgtccattttagacgcatatgaaaaaatgggtaagcatgaaaaaggtctctctttgcttgaatggatccggcagcatgttcccaactcccacaacttaatatctgaatgctcgatcatgcttttgtgcaaaaatgggaagattgttgatgccattcaggagtacagtagaaaacaaatgttaaaacgtggatcctttggtcaagactgcgacttgtatgagtacttgattacttaccttgaggaggctgagttatttcccgaatcttgtcaagtgttctgcgatatgcagtttcttggcatagttccttcccaaaagatataccagagtataatttacacatgctgcagattgggtttcccagaaacggcttatcaattgatggatgatgctgcgcgatctgatatttccttgaacattctttcatgcagagtagcaatgattgaagcgtatggtaagttaaaactctggcagcaggcagaaaattttgtgaaaggattgaagcaggaatctggtgttgatagaaggatttggaatgctttaatacatgcatatgctgagagtggcctttatgagcatgcaagggcaatctttgacattatgattaaaaagggtcctctaccaactgttgaatcagttaatggaatgatgagagcattgattgttgatggcaggctggatgagttgtatgtggttgttcaggagcttcaagatttagacatcaagatcagcaaaagcacagtactccttatgcttgaagcttttgcaaaagctggggatgtattcgaggtaatgaaaatatataatgggatgaaggctgcaggatacttgccaaatatgcacctctacagaattatgatcaccttgctctgccataataaacgattcagagatgtcgaattgatggttgcagagatggagggagcaggattcaaaccagatctcgtggtacttaatacccttcttttaatgtatactgggacaggaaactttgacaggacaatagaagtatatcatagtattctggaagctggattagagcctgatgaggatacatataatactcttatagtcatgtacagtagaaactttaggcctgaagaaggttttactctcttgtatgaaatgggtaaacggggtttgacacccaagttagaatcctacaaaatcttgcttgctgcatctggaaaagctaaactctgggagcaagctgacctgctttttgaagaaatgagaacaaagggatatcggttaaatagatctatctaccacatgatgatgaaaatatataggaatgcccgcaaccattccaaagccgagcacttactatcagcaatgaaagaggatgggattgaaccaaccatcgctactatgcatatcctcatgacttcttatgggacttctgggcacccagacgaagctgagaaagtcctgaacagcttgaaatcttctaatttggaaattagcactttaccatacagtactgttctcgatgcttacttgagaaatcgtgactacagtcttggaatcacaaagcttttagaaatgaaaagagatggtgtagaaccagatcatcaagtctggacaagtttcatcagggctgctagtttgtgcgagcagactgatgatgccattcttcttctaaagtctttgcaggattgtggatttgaccttcccattaggctccttactgagaggacttcgtctctgtttactgaggttgacagctttctagaaaaacttgggacactagaagattctgcttcattgaactttgtaaatgcactggaagacctgttatgggcatttgaacgtcgagcaaccgcttcatggattttccaattggctgtaaaaagaagcatataccatcataatatctttcgagtggaagaaaaagattggggagctgacttacgcaagttgtctgctggggctgctcttgttgctctaacattgtggcttgatcagatgcaagatgcttcactgcagggtgcaccagaatcccccaaatctattgtattggtcacaggagagggggaatataacatggtatccttgcgtaaaactatcagggcttaccttttggaaatgggctcccctttcctaccatgcagaagtcggtcaggtcgctttgtggtgaaggcttactctcttaagatgtggctgaaagactctcctttttgcctggaccttgagttgaaagatgctcccgctcttcctaaaacgaactcaatgaagcttactgaaggatattttatgagagccggtcttgtacctgtatttaaagatatacatgagcgacttggagaagtatggccaaagaagttttccagactagctctattgtcagaagaaagcagggatgaagttattaaagctgatataaaaggaaggaaagaaaaattggagaaaatgaaaaaacagggtcttgccatagcaaagagatctaaaaggacctcggagagggaaatttgttaa
More
|
||||||||||
| Protein seq | MPLMAVASQPFLSTSTSTSSRHIRRATVATAAAAAPDDFDYPLADPSVRWPHLRFPHLPSPRFPAAPVARPSEGGEEEEAAAGPSSAAASAAALEPLDARAHRGRVKKLSKLALRRARDWRARVAGLADRVLALAPGAPVGDVLDGARPAPDELAFVVRAVGVASWRRALDAFEWLVASGGGRAPGPRVVAVVLGVLGRARQDALAEDVFLRFAREGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSMHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLLTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPESCQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMITLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSPFCLDLELKDAPALPKTNSMKLTEGYFMRAGLVPVFKDIHERLGEVWPKKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKRTSEREIC |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [UniProtKB/Swiss-Prot:Q5G1S8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0028140 | OsLiXu_Ung0028140.02 | ChrUN-Ctg219 | 283539 | 291059 | - | NAM | ||
| CDS seq | atgcctctcatggccgtcgcctcccaacccttcctctccacctccacctccacctcctcgcgccacatccgccgcgccaccgtcgccacggccgcggccgcggcgccggatgatttcgactaccccctcgccgacccctccgtccgctggccacacctccgcttcccccacctcccctcgcctcgcttccccgccgcgcccgtggcgaggccctcggagggaggagaggaggaggaggcggcggcggggccctcgtcggccgccgcctccgccgccgccctcgagccgctcgacgcgcgggcgcaccgcgggagggtgaagaagctcagcaagctcgcgctgcggcgggcgcgggactggcgcgcgcgcgtcgcgggcctcgcggaccgcgtcctggcgctggctcccggcgcgcccgtcggggacgtgctcgacggcgcgcgccccgcgccggacgagctcgcgttcgtcgtgcgcgcggtgggggtggcgtcctggcggcgcgcgctcgacgccttcgagtggctcgtcgcgagcggcggcgggcgtgccccgggcccccgcgtcgtcgccgtcgtcctcggcgtcctcgggcgcgcccgccaggacgcgctcgcggaggatgtcttcctccggttcgcccgcgagggtgccaccgtgcaggtgttcaatgccatgatgggcgtctacgctcgttctggccgcttcgacgacgcgcgccagctgcttgacgcaatgcgtgaccaggacatcgagcctgacctcgttagcttcaatacccttatcaatgccagggccaagtctgggtgtttggccgctggtgtcgctcttgagctcctacatgaagtccggcaagctgggctgagaccggatgctatcacttacaacaccctcatcagtgcttgctcacaaggttctaatttggatgatgcagtggcggtgtttgaggagatgatagcttcagagtgtcggccagatttgtggacgtacaatgccatggtctccatgcatggccggtgcgggaaggcacaggaggctgagctgatgtttaaggagctggttgagaagggttttcagccggatgcagtcacatacaactcgctcctttatgctttcgcgaaggaaggcgatgtggagagggtggagcgtgtgtgtgaggaattggttaaggctggtttcaggaaggatgggattacttataataccatgattcatatgtatggaaagatgggcaggcttgacttggctcttgggttgtatgatgagatgagggctataggctgcactccagatgctgtgacctatactgttttggttgattctttagggaagatggataggatttctgaggcagggaaggtgctggaggagatggctgatgcaggattaaagccaactttgttaactttcagtgctttgatatgtgcatacgccaaaagtgggaggcaggatgatgcggagcgtacatttgatcgtatggttgagtcaggtgtcaaacctgatcgtttagcctatttggttatgttagatgtttttgcaaggtctgatgagactagaaagctgatggttctgtaccgggctatgatcaaggatggatataagccagatgatggtttatatcaggtcttgcttgctgcactcgcaaagggaaatgaacacgatgagattgaaggagttatccaagacatggaggccgtttttgaaatgaatccactagtaatatccagtatactcatcaaggctgaatgcatttctcagggtgctagtctgttaaagagggcatgcctccaaggatatgagcctgacggtaagagcctactgtccattttagacgcatatgaaaaaatgggtaagcatgaaaaaggtctctctttgcttgaatggatccggcagcatgttcccaactcccacaacttaatatctgaatgctcgatcatgcttttgtgcaaaaatgggaagattgttgatgccattcaggagtacagtagaaaacaaatgttaaaacgtggatcctttggtcaagactgcgacttgtatgagtacttgattacttaccttgaggaggctgagttatttcccgaatcttgtcaagtgttctgcgatatgcagtttcttggcatagttccttcccaaaagatataccagagtataatttacacatgctgcagattgggtttcccagaaacggcttatcaattgatggatgatgctgcgcgatctgatatttccttgaacattctttcatgcagagtagcaatgattgaagcgtatggtaagttaaaactctggcagcaggcagaaaattttgtgaaaggattgaagcaggaatctggtgttgatagaaggatttggaatgctttaatacatgcatatgctgagagtggcctttatgagcatgcaagggcaatctttgacattatgattaaaaagggtcctctaccaactgttgaatcagttaatggaatgatgagagcattgattgttgatggcaggctggatgagttgtatgtggttgttcaggagcttcaagatttagacatcaagatcagcaaaagcacagtactccttatgcttgaagcttttgcaaaagctggggatgtattcgaggtaatgaaaatatataatgggatgaaggctgcaggatacttgccaaatatgcacctctacagaattatgatcaccttgctctgccataataaacgattcagagatgtcgaattgatggttgcagagatggagggagcaggattcaaaccagatctcgtggtacttaatacccttcttttaatgtatactgggacaggaaactttgacaggacaatagaagtatatcatagtattctggaagctggattagagcctgatgaggatacatataatactcttatagtcatgtacagtagaaactttaggcctgaagaaggttttactctcttgtatgaaatgggtaaacggggtttgacacccaagttagaatcctacaaaatcttgcttgctgcatctggaaaagctaaactctgggagcaagctgacctgctttttgaagaaatgagaacaaagggatatcggttaaatagatctatctaccacatgatgatgaaaatatataggaatgcccgcaaccattccaaagccgagcacttactatcagcaatgaaagaggatgggattgaaccaaccatcgctactatgcatatcctcatgacttcttatgggacttctgggcacccagacgaagctgagaaagtcctgaacagcttgaaatcttctaatttggaaattagcactttaccatacagtactgttctcgatgcttacttgagaaatcgtgactacagtcttggaatcacaaagcttttagaaatgaaaagagatggtgtagaaccagatcatcaagtctggacaagtttcatcagggctgctagtttgtgcgagcagactgatgatgccattcttcttctaaagtctttgcaggattgtggatttgaccttcccattaggctccttactgagaggacttcgtctctgtttactgaggttgacagctttctagaaaaacttgggacactagaagattctgcttcattgaactttgtaaatgcactggaagacctgttatgggcatttgaacgtcgagcaaccgcttcatggattttccaattggctgtaaaaagaagcatataccatcataatatctttcgagtggaagaaaaagattggggagctgacttacgcaagttgtctgctggggctgctcttgttgctctaacattgtggcttgatcagatgcaagatgcttcactgcagggtgcaccagaatcccccaaatctattgtattggtcacaggagagggggaatataacatggtatccttgcgtaaaactatcagggcttaccttttggaaatgggctcccctttcctaccatgcagaagtcggtcaggtcgctttgtggtgaaggcttactctcttaagatgtggctgaaagactctcctttttgcctggaccttgagttgaaagatgctcccgctcttcctaaaacgaactcaatgaagcttactgaaggatattttatgagagccggtcttgtacctgtatttaaagatatacatgagcgacttggagaagtatggccaaagaagttttccagactagctctattgtcagaagaaagcagggatgaagttattaaagctgatataaaaggaaggaaagaaaaattggagaaaatgaaaaaacagggtcttgccatagcaaagagatctaaaaggacctcggagagggaaatttgttaa
More
|
|||||||
| Protein seq | MPLMAVASQPFLSTSTSTSSRHIRRATVATAAAAAPDDFDYPLADPSVRWPHLRFPHLPSPRFPAAPVARPSEGGEEEEAAAGPSSAAASAAALEPLDARAHRGRVKKLSKLALRRARDWRARVAGLADRVLALAPGAPVGDVLDGARPAPDELAFVVRAVGVASWRRALDAFEWLVASGGGRAPGPRVVAVVLGVLGRARQDALAEDVFLRFAREGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSMHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLLTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPESCQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMITLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSPFCLDLELKDAPALPKTNSMKLTEGYFMRAGLVPVFKDIHERLGEVWPKKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKRTSEREIC
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0028140 | OsLiXu_Ung0028140.01 | ChrUN-Ctg219 | 283539 | 291059 | - | NAM | ||
| CDS seq | atgcctctcatggccgtcgcctcccaacccttcctctccacctccacctccacctcctcgcgccacatccgccgcgccaccgtcgccacggccgcggccgcggcgccggatgatttcgactaccccctcgccgacccctccgtccgctggccacacctccgcttcccccacctcccctcgcctcgcttccccgccgcgcccgtggcgaggccctcggagggaggagaggaggaggaggcggcggcggggccctcgtcggccgccgcctccgccgccgccctcgagccgctcgacgcgcgggcgcaccgcgggagggtgaagaagctcagcaagctcgcgctgcggcgggcgcgggactggcgcgcgcgcgtcgcgggcctcgcggaccgcgtcctggcgctggctcccggcgcgcccgtcggggacgtgctcgacggcgcgcgccccgcgccggacgagctcgcgttcgtcgtgcgcgcggtgggggtggcgtcctggcggcgcgcgctcgacgccttcgagtggctcgtcgcgagcggcggcgggcgtgccccgggcccccgcgtcgtcgccgtcgtcctcggcgtcctcgggcgcgcccgccaggacgcgctcgcggaggatgtcttcctccggttcgcccgcgagggtgccaccgtgcaggtgttcaatgccatgatgggcgtctacgctcgttctggccgcttcgacgacgcgcgccagctgcttgacgcaatgcgtgaccaggacatcgagcctgacctcgttagcttcaatacccttatcaatgccagggccaagtctgggtgtttggccgctggtgtcgctcttgagctcctacatgaagtccggcaagctgggctgagaccggatgctatcacttacaacaccctcatcagtgcttgctcacaaggttctaatttggatgatgcagtggcggtgtttgaggagatgatagcttcagagtgtcggccagatttgtggacgtacaatgccatggtctccatgcatggccggtgcgggaaggcacaggaggctgagctgatgtttaaggagctggttgagaagggttttcagccggatgcagtcacatacaactcgctcctttatgctttcgcgaaggaaggcgatgtggagagggtggagcgtgtgtgtgaggaattggttaaggctggtttcaggaaggatgggattacttataataccatgattcatatgtatggaaagatgggcaggcttgacttggctcttgggttgtatgatgagatgagggctataggctgcactccagatgctgtgacctatactgttttggttgattctttagggaagatggataggatttctgaggcagggaaggtgctggaggagatggctgatgcaggattaaagccaactttgttaactttcagtgctttgatatgtgcatacgccaaaagtgggaggcaggatgatgcggagcgtacatttgatcgtatggttgagtcaggtgtcaaacctgatcgtttagcctatttggttatgttagatgtttttgcaaggtctgatgagactagaaagctgatggttctgtaccgggctatgatcaaggatggatataagccagatgatggtttatatcaggtcttgcttgctgcactcgcaaagggaaatgaacacgatgagattgaaggagttatccaagacatggaggccgtttttgaaatgaatccactagtaatatccagtatactcatcaaggctgaatgcatttctcagggtgctagtctgttaaagagggcatgcctccaaggatatgagcctgacggtaagagcctactgtccattttagacgcatatgaaaaaatgggtaagcatgaaaaaggtctctctttgcttgaatggatccggcagcatgttcccaactcccacaacttaatatctgaatgctcgatcatgcttttgtgcaaaaatgggaagattgttgatgccattcaggagtacagtagaaaacaaatgttaaaacgtggatcctttggtcaagactgcgacttgtatgagtacttgattacttaccttgaggaggctgagttatttcccgaatcttgtcaagtgttctgcgatatgcagtttcttggcatagttccttcccaaaagatataccagagtataatttacacatgctgcagattgggtttcccagaaacggcttatcaattgatggatgatgctgcgcgatctgatatttccttgaacattctttcatgcagagtagcaatgattgaagcgtatggtaagttaaaactctggcagcaggcagaaaattttgtgaaaggattgaagcaggaatctggtgttgatagaaggatttggaatgctttaatacatgcatatgctgagagtggcctttatgagcatgcaagggcaatctttgacattatgattaaaaagggtcctctaccaactgttgaatcagttaatggaatgatgagagcattgattgttgatggcaggctggatgagttgtatgtggttgttcaggagcttcaagatttagacatcaagatcagcaaaagcacagtactccttatgcttgaagcttttgcaaaagctggggatgtattcgaggtaatgaaaatatataatgggatgaaggctgcaggatacttgccaaatatgcacctctacagaattatgatcaccttgctctgccataataaacgattcagagatgtcgaattgatggttgcagagatggagggagcaggattcaaaccagatctcgtggtacttaatacccttcttttaatgtatactgggacaggaaactttgacaggacaatagaagtatatcatagtattctggaagctggattagagcctgatgaggatacatataatactcttatagtcatgtacagtagaaactttaggcctgaagaaggttttactctcttgtatgaaatgggtaaacggggtttgacacccaagttagaatcctacaaaatcttgcttgctgcatctggaaaagctaaactctgggagcaagctgacctgctttttgaagaaatgagaacaaagggatatcggttaaatagatctatctaccacatgatgatgaaaatatataggaatgcccgcaaccattccaaagccgagcacttactatcagcaatgaaagaggatgggattgaaccaaccatcgctactatgcatatcctcatgacttcttatgggacttctgggcacccagacgaagctgagaaagtcctgaacagcttgaaatcttctaatttggaaattagcactttaccatacagtactgttctcgatgcttacttgagaaatcgtgactacagtcttggaatcacaaagcttttagaaatgaaaagagatggtgtagaaccagatcatcaagtctggacaagtttcatcagggctgctagtttgtgcgagcagactgatgatgccattcttcttctaaagtctttgcaggattgtggatttgaccttcccattaggctccttactgagaggacttcgtctctgtttactgaggttgacagctttctagaaaaacttgggacactagaagattctgcttcattgaactttgtaaatgcactggaagacctgttatgggcatttgaacgtcgagcaaccgcttcatggattttccaattggctgtaaaaagaagcatataccatcataatatctttcgagtggaagaaaaagattggggagctgacttacgcaagttgtctgctggggctgctcttgttgctctaacattgtggcttgatcagatgcaagatgcttcactgcagggtgcaccagaatcccccaaatctattgtattggtcacaggagagggggaatataacatggtatccttgcgtaaaactatcagggcttaccttttggaaatgggctcccctttcctaccatgcagaagtcggtcaggtcgctttgtggtgaaggcttactctcttaagatgtggctgaaagactctcctttttgcctggaccttgagttgaaagatgctcccgctcttcctaaaacgaactcaatgaagcttactgaaggatattttatgagagccggtcttgtacctgtatttaaagatatacatgagcgacttggagaagtatggccaaagaagttttccagactagctctattgtcagaagaaagcagggatgaagttattaaagctgatataaaaggaaggaaagaaaaattggagaaaatgaaaaaacagggtcttgccatagcaaagagatctaaaaggacctcggagagggaaatttgttaa
More
|
|||||||
| Protein seq | MPLMAVASQPFLSTSTSTSSRHIRRATVATAAAAAPDDFDYPLADPSVRWPHLRFPHLPSPRFPAAPVARPSEGGEEEEAAAGPSSAAASAAALEPLDARAHRGRVKKLSKLALRRARDWRARVAGLADRVLALAPGAPVGDVLDGARPAPDELAFVVRAVGVASWRRALDAFEWLVASGGGRAPGPRVVAVVLGVLGRARQDALAEDVFLRFAREGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSMHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLLTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPESCQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMITLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSPFCLDLELKDAPALPKTNSMKLTEGYFMRAGLVPVFKDIHERLGEVWPKKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKRTSEREIC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | ChrUN-Ctg219 | 283578 | 284525 | - | OsLiXu_Ung0028140.02 | OsLiXu_Ung0028140.02,OsLiXu_Ung0028140.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.960977 | 0.0 | 0.258264 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0199100 | SBH | 14.888171 | 12.093481 | 1.851511 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09880 | SBH | 9.556705 | 7.841463 | 0.419023 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0199100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006840 | SBH | 3.244390 | 2.259605 | 3.707277 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006670 | SBH | 1.622330 | 0.000000 | 3.633023 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006670 | SBH | 5.864385 | 0.460561 | 9.519974 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006770 | SBH | 1.289383 | 0.032853 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006670 | SBH | 26.132032 | 0.709325 | 5.825834 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0083900 | SBH | 26.07643 | 33.760252 | 21.6520735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006500 | SBH | 2.447388 | 0.000000 | 0.363276 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0082900 | SBH | 14.759096 | 8.038538 | 9.9287295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006880 | SBH | 1.239320 | 0.157188 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006750 | SBH | 3.088014 | 1.216998 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006790 | SBH | 34.276775 | 5.709083 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006800 | RBH | 3.999635 | 0.000000 | 0.584516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006660 | SBH | 1.659203 | 0.650774 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006510 | SBH | 2.798321 | 0.327236 | 1.887334 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006790 | SBH | 10.399610 | 4.898419 | 3.608840 |
