Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0028120 | OGI:99034050 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg219:273850-275928 | ||||||||
| Gene Symbol | RLCK202, OsRLCK202 | ||||||||||
| DNA seq | atggcgcagcctctcctcctcctcctcctcgccgcctccgccgccgccgccgtcgcggtggtggcggtggcgcagacgaacatggccgacgccgaggcgctgatgcagctgaagaagtcgttcaccaactcctcctcgctgtcgtcgtggctcatcaccaacacggacggcgacaagtcgccgtgcgcgccggggtcgcacgagtggcatggcgtcgtgtgctcccgcggcaaggtcaccggcctccgcctcaatggcctccgcctcggcggcaccgtcgacgtcggtgcgctcgtcggcttccacaacctgcggtccgtgtcgttcgccggcaacaacttctccggcccgctccccgccgtcgaccggctgacgtcgatcaagtccatgttcttctccgacaaccagttcaccggtgtcctcccggacgacttcttctccaagctcagccacctcaagaagctctggctcgatcacaacgagctctccggcgccatcccggcgtccatcgcgcaggccacgtcgcttcttgagctccacctcgcgcacaacgccttctccggcgagctcccgccgctgccgccgccggcgctcaaggtgttcgacatctcctggaacgacctcgagggcgtcgtcccggaggctttccggaagttcgacgccggcaggttcggcggcaaccagtacctctgctacgtgccgacctctgaccggccgtgcaagcgtgtgcaggcggcggcggcgagctcgtccaagaggtcgcccatggcgttcgtcacgctgctcgtctcggtcgtcgtggtggcgctcgtgctttgcctgtgctgcaaccggtcgagccgcgtccacgacttcgaccccgcccaccgcggcggcgacggtctcgacgagaggccgccggtgtacatggtgaagcagttctcgacgacggggaagcggagcgcgtcgtggctggggaagaggacggggtcgtcgctccgcgggcatcggcgcgccgcgtcggccgcgaaggcggacgagctgggcggcggcgccggtgacctcgtcatcgtgaacaactgcaagggcgtgttcgggctgaccgacctgatgaaggcggcggcggaggtgatcggcagcggcgggcacgggtcggcgtacaaggcggtgatggcgaacggcgtggccgtggtggtgaagcgcgcgcgcgacatgaaccgcgccaccaaggacgcgttcgaggccgagatgaagcggctcggcgccatgagccacgccaacctgctgccgccgctggcctaccattaccggagggacgagaagctgctggtctacgagtacatccccaaggggagcttgctctacgtgctccacgaccggggcatggactacgcggggctggactggccgacgcggctcaaggtggccgtcggcgtcgcgcgcggcacggcgttcctccacggcgagctcgccgggcacgaggtgccacacggcaacctcaagtcggcgaacatcctcctcgcgccggacttcgagccgctcctcgtcgacttcggctactccggcctaatcaaccacatgcagtcgccgaactccatgatcgcgcgccgggcgccggagtgcgccgccggacaccccgtcggcgccaaggccgacgtctactgcctcggcatcgtcctcctcgagctcctcaccggcaagttcccgtccctatacctccagaacgccaagggcggcacggacctcgtcatgtgggcgacgtcggcgatcgccgacggctacgagcgggacctgttcgacaaggccatcacgtcggcgtggaagttcgcgctgccggacatggcgcggctcatgcgcgtcgccgtcgactgcgtcgagacggacgccgacaagcggccggacatgaaggtcgccgcggcgagggtggaggaggtggtcgccgcggccatggcgacggtgagggagaggcatcaagcggccggtggcgagagcagcagaagctcgtcgcacgcccagtacgtgcgagacgggtccatgcagcggatcacaagcgtcggcgagcggtcgtcccggcgaggtagcaacgactactcgtcgtga
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| CDS seq | atggcgcagcctctcctcctcctcctcctcgccgcctccgccgccgccgccgtcgcggtggtggcggtggcgcagacgaacatggccgacgccgaggcgctgatgcagctgaagaagtcgttcaccaactcctcctcgctgtcgtcgtggctcatcaccaacacggacggcgacaagtcgccgtgcgcgccggggtcgcacgagtggcatggcgtcgtgtgctcccgcggcaaggtcaccggcctccgcctcaatggcctccgcctcggcggcaccgtcgacgtcggtgcgctcgtcggcttccacaacctgcggtccgtgtcgttcgccggcaacaacttctccggcccgctccccgccgtcgaccggctgacgtcgatcaagtccatgttcttctccgacaaccagttcaccggtgtcctcccggacgacttcttctccaagctcagccacctcaagaagctctggctcgatcacaacgagctctccggcgccatcccggcgtccatcgcgcaggccacgtcgcttcttgagctccacctcgcgcacaacgccttctccggcgagctcccgccgctgccgccgccggcgctcaaggtgttcgacatctcctggaacgacctcgagggcgtcgtcccggaggctttccggaagttcgacgccggcaggttcggcggcaaccagtacctctgctacgtgccgacctctgaccggccgtgcaagcgtgtgcaggcggcggcggcgagctcgtccaagaggtcgcccatggcgttcgtcacgctgctcgtctcggtcgtcgtggtggcgctcgtgctttgcctgtgctgcaaccggtcgagccgcgtccacgacttcgaccccgcccaccgcggcggcgacggtctcgacgagaggccgccggtgtacatggtgaagcagttctcgacgacggggaagcggagcgcgtcgtggctggggaagaggacggggtcgtcgctccgcgggcatcggcgcgccgcgtcggccgcgaaggcggacgagctgggcggcggcgccggtgacctcgtcatcgtgaacaactgcaagggcgtgttcgggctgaccgacctgatgaaggcggcggcggaggtgatcggcagcggcgggcacgggtcggcgtacaaggcggtgatggcgaacggcgtggccgtggtggtgaagcgcgcgcgcgacatgaaccgcgccaccaaggacgcgttcgaggccgagatgaagcggctcggcgccatgagccacgccaacctgctgccgccgctggcctaccattaccggagggacgagaagctgctggtctacgagtacatccccaaggggagcttgctctacgtgctccacgaccggggcatggactacgcggggctggactggccgacgcggctcaaggtggccgtcggcgtcgcgcgcggcacggcgttcctccacggcgagctcgccgggcacgaggtgccacacggcaacctcaagtcggcgaacatcctcctcgcgccggacttcgagccgctcctcgtcgacttcggctactccggcctaatcaaccacatgcagtcgccgaactccatgatcgcgcgccgggcgccggagtgcgccgccggacaccccgtcggcgccaaggccgacgtctactgcctcggcatcgtcctcctcgagctcctcaccggcaagttcccgtccctatacctccagaacgccaagggcggcacggacctcgtcatgtgggcgacgtcggcgatcgccgacggctacgagcgggacctgttcgacaaggccatcacgtcggcgtggaagttcgcgctgccggacatggcgcggctcatgcgcgtcgccgtcgactgcgtcgagacggacgccgacaagcggccggacatgaaggtcgccgcggcgagggtggaggaggtggtcgccgcggccatggcgacggtgagggagaggcatcaagcggccggtggcgagagcagcagaagctcgtcgcacgcccagtacgtgcgagacgggtccatgcagcggatcacaagcgtcggcgagcggtcgtcccggcgaggtagcaacgactactcgtcgtga
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| Protein seq | MAQPLLLLLLAASAAAAVAVVAVAQTNMADAEALMQLKKSFTNSSSLSSWLITNTDGDKSPCAPGSHEWHGVVCSRGKVTGLRLNGLRLGGTVDVGALVGFHNLRSVSFAGNNFSGPLPAVDRLTSIKSMFFSDNQFTGVLPDDFFSKLSHLKKLWLDHNELSGAIPASIAQATSLLELHLAHNAFSGELPPLPPPALKVFDISWNDLEGVVPEAFRKFDAGRFGGNQYLCYVPTSDRPCKRVQAAAASSSKRSPMAFVTLLVSVVVVALVLCLCCNRSSRVHDFDPAHRGGDGLDERPPVYMVKQFSTTGKRSASWLGKRTGSSLRGHRRAASAAKADELGGGAGDLVIVNNCKGVFGLTDLMKAAAEVIGSGGHGSAYKAVMANGVAVVVKRARDMNRATKDAFEAEMKRLGAMSHANLLPPLAYHYRRDEKLLVYEYIPKGSLLYVLHDRGMDYAGLDWPTRLKVAVGVARGTAFLHGELAGHEVPHGNLKSANILLAPDFEPLLVDFGYSGLINHMQSPNSMIARRAPECAAGHPVGAKADVYCLGIVLLELLTGKFPSLYLQNAKGGTDLVMWATSAIADGYERDLFDKAITSAWKFALPDMARLMRVAVDCVETDADKRPDMKVAAARVEEVVAAAMATVRERHQAAGGESSRSSSHAQYVRDGSMQRITSVGERSSRRGSNDYSS |
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| Function | Pollen receptor-like kinase 3 [UniProtKB/Swiss-Prot:Q9M1L7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0028120 | OsLiXu_Ung0028120.01 | ChrUN-Ctg219 | 273850 | 275928 | + | NAM | ||
| CDS seq | atggcgcagcctctcctcctcctcctcctcgccgcctccgccgccgccgccgtcgcggtggtggcggtggcgcagacgaacatggccgacgccgaggcgctgatgcagctgaagaagtcgttcaccaactcctcctcgctgtcgtcgtggctcatcaccaacacggacggcgacaagtcgccgtgcgcgccggggtcgcacgagtggcatggcgtcgtgtgctcccgcggcaaggtcaccggcctccgcctcaatggcctccgcctcggcggcaccgtcgacgtcggtgcgctcgtcggcttccacaacctgcggtccgtgtcgttcgccggcaacaacttctccggcccgctccccgccgtcgaccggctgacgtcgatcaagtccatgttcttctccgacaaccagttcaccggtgtcctcccggacgacttcttctccaagctcagccacctcaagaagctctggctcgatcacaacgagctctccggcgccatcccggcgtccatcgcgcaggccacgtcgcttcttgagctccacctcgcgcacaacgccttctccggcgagctcccgccgctgccgccgccggcgctcaaggtgttcgacatctcctggaacgacctcgagggcgtcgtcccggaggctttccggaagttcgacgccggcaggttcggcggcaaccagtacctctgctacgtgccgacctctgaccggccgtgcaagcgtgtgcaggcggcggcggcgagctcgtccaagaggtcgcccatggcgttcgtcacgctgctcgtctcggtcgtcgtggtggcgctcgtgctttgcctgtgctgcaaccggtcgagccgcgtccacgacttcgaccccgcccaccgcggcggcgacggtctcgacgagaggccgccggtgtacatggtgaagcagttctcgacgacggggaagcggagcgcgtcgtggctggggaagaggacggggtcgtcgctccgcgggcatcggcgcgccgcgtcggccgcgaaggcggacgagctgggcggcggcgccggtgacctcgtcatcgtgaacaactgcaagggcgtgttcgggctgaccgacctgatgaaggcggcggcggaggtgatcggcagcggcgggcacgggtcggcgtacaaggcggtgatggcgaacggcgtggccgtggtggtgaagcgcgcgcgcgacatgaaccgcgccaccaaggacgcgttcgaggccgagatgaagcggctcggcgccatgagccacgccaacctgctgccgccgctggcctaccattaccggagggacgagaagctgctggtctacgagtacatccccaaggggagcttgctctacgtgctccacgaccggggcatggactacgcggggctggactggccgacgcggctcaaggtggccgtcggcgtcgcgcgcggcacggcgttcctccacggcgagctcgccgggcacgaggtgccacacggcaacctcaagtcggcgaacatcctcctcgcgccggacttcgagccgctcctcgtcgacttcggctactccggcctaatcaaccacatgcagtcgccgaactccatgatcgcgcgccgggcgccggagtgcgccgccggacaccccgtcggcgccaaggccgacgtctactgcctcggcatcgtcctcctcgagctcctcaccggcaagttcccgtccctatacctccagaacgccaagggcggcacggacctcgtcatgtgggcgacgtcggcgatcgccgacggctacgagcgggacctgttcgacaaggccatcacgtcggcgtggaagttcgcgctgccggacatggcgcggctcatgcgcgtcgccgtcgactgcgtcgagacggacgccgacaagcggccggacatgaaggtcgccgcggcgagggtggaggaggtggtcgccgcggccatggcgacggtgagggagaggcatcaagcggccggtggcgagagcagcagaagctcgtcgcacgcccagtacgtgcgagacgggtccatgcagcggatcacaagcgtcggcgagcggtcgtcccggcgaggtagcaacgactactcgtcgtga
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| Protein seq | MAQPLLLLLLAASAAAAVAVVAVAQTNMADAEALMQLKKSFTNSSSLSSWLITNTDGDKSPCAPGSHEWHGVVCSRGKVTGLRLNGLRLGGTVDVGALVGFHNLRSVSFAGNNFSGPLPAVDRLTSIKSMFFSDNQFTGVLPDDFFSKLSHLKKLWLDHNELSGAIPASIAQATSLLELHLAHNAFSGELPPLPPPALKVFDISWNDLEGVVPEAFRKFDAGRFGGNQYLCYVPTSDRPCKRVQAAAASSSKRSPMAFVTLLVSVVVVALVLCLCCNRSSRVHDFDPAHRGGDGLDERPPVYMVKQFSTTGKRSASWLGKRTGSSLRGHRRAASAAKADELGGGAGDLVIVNNCKGVFGLTDLMKAAAEVIGSGGHGSAYKAVMANGVAVVVKRARDMNRATKDAFEAEMKRLGAMSHANLLPPLAYHYRRDEKLLVYEYIPKGSLLYVLHDRGMDYAGLDWPTRLKVAVGVARGTAFLHGELAGHEVPHGNLKSANILLAPDFEPLLVDFGYSGLINHMQSPNSMIARRAPECAAGHPVGAKADVYCLGIVLLELLTGKFPSLYLQNAKGGTDLVMWATSAIADGYERDLFDKAITSAWKFALPDMARLMRVAVDCVETDADKRPDMKVAAARVEEVVAAAMATVRERHQAAGGESSRSSSHAQYVRDGSMQRITSVGERSSRRGSNDYSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.002349 | 0.0 | 0.193046 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0198900 | SBH | 0.000000 | 0.108764 | 3.184417 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09860 | SBH | 0.004390 | 0.071175 | 0.802287 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0198900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006820 | SBH | 0.0 | 0.0 | 1.599891 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006650 | SBH | 0.0 | 0.0 | 2.117854 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006650 | SBH | 0.178150 | 0.0 | 3.081753 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006750 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006650 | SBH | 0.000000 | 0.0 | 0.783177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0083700 | SBH | 0.140083 | 0.3546435 | 0.0234755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006480 | SBH | 0.0 | 0.0 | 0.986059 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0082700 | SBH | 0.0126145 | 0.0836925 | 0.0061865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006860 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006730 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006770 | SBH | 2.907542 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006780 | RBH | 0.168853 | 0.0 | 0.169773 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006640 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006490 | SBH | 0.0 | 0.0 | 0.734604 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006770 | SBH | 0.036168 | 0.0 | 4.537225 |
