Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0026440 | OGI:06007820 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg211:276972-279168 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggacgccgccgccgccgccgccggcggcggaggcagccaccgttccgtccaccatgcgcacctcgcggcgctgctcaacccctccccgcgctcgccgccgcacccgcacccgctccagctccaccggcgccacctcccgctgtcccttcccgcggcccgccgcctcgccgcggccttcccgccgctcccgctcctcctctccctcctcgccgcgctccgcctcctcccctcgccgccgccgccgcgccccttcgacgcgctcatcaggtcgtacgcctccctccctcgcccctccctcgccgccgcggcgctcgcgttcgccgcgtcggccgggtacgccccctccgtcccggcctacaacgccgtcctcctcgcgctctccgacgcctcgctcccctccgcccgccgcttcctctcctccatgctccgccacggcgtggcgcccaacgtgtacacctacaacatcctcgtccgcgcgctctgcgcccgcggccgcctggaggaggcggtcggcgtcgtgggcgacatgcgtggcgcgggctgcgcgcccaacgccgtcacctacaacacgctcgtcgcggcgttctgcagggccggggagttggacggcgcggagagggtggtcagcttgatgagggaggagggcaatgcgaagccgaatctggtgaccttcaactcgatggtgaatgggctgtgtaaagcggggaggatggagggtgcacgcaaggtgttcgatgaaatggtgagggaggggttggcaccggatgtggtcagctacaacaccttgttaagtggttactgcaaggtgggttgcttacatgagtcattggcggtgttttcagagatgacacagagagggcttgtgccagatgtcgtgacgtttacgtcgctaatccatgcaacatgtaaggctggtaacttggagcaggcagtggctctggtggcgcagatgagggagaggggccttcggatgaacgaggtcactttcacggcacttatagatggtttctgcaagaaggggttcttggatgatgcattgcttgcagttgaggagatgaggaaatgtgggatccagccttcagtggtatgttacaatgcacttattaatgggtactgcaagttaggaagaatggatctagcaagagagctaatccgtgaaatggaggctaaaagagtgaaacccgatgttgtgacctatagtacgattatcagcggatactgtaaggttggcaatttggattctgcattccaattgaatcagaaaatgctcaaaaagggtgtgcttccagatgcaatcacctactcatcactcataaggggtctttgtgaagagaaaaggctcaatgatgcttgtgagctatttgagaacatgcttcaacttggtgtgcaacctgacgaatttacttatacaacactcattgatggccactgcaaggaaggaaatgttgagaaggctctttctctgcatgatgagatgataaggaagggagttctccctgatgttgtgacgtacagtgtgctcataaatgggcttagcaagtcagcacgtacaaaggaggcacatcggttactctttaaactgtatcatgaagatccggttccagacaatattaagtatgatgctctgatgctttgttgcagcaaagctgagtttaagagtgtagtggccctcctgaagggattttgcatgaaaggcttgatgaaggaagctgataaagtataccagtcgatgttggacagaaactggaagcttgatgggtctgtgtacagtatacttattcatgggcattgcaggggaggaaatgttaggaaggctctcagctttcataaacaaatgttgcggagtgggttttcccctaattcaacaagcaccatttcattggttaggggtttatttgaagaggggatggttgtggaagcagataatgccattcaggacttactgacttgttgtccactagcagatgcagaagcatcaaaggctcttattgacctcaatcggaaggaaggtaatgtggacgctttaattgatgttctttgtggtatggcaagggatggactacttccaagctcagggtgaaatctggtattcagaatcctccccctctgtggaatactggaattacatgatgaccatatgtcactttggagtttggagcacttatttttccatgcttcgcttaacaaaatga
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| CDS seq | atggcggacgccgccgccgccgccgccggcggcggaggcagccaccgttccgtccaccatgcgcacctcgcggcgctgctcaacccctccccgcgctcgccgccgcacccgcacccgctccagctccaccggcgccacctcccgctgtcccttcccgcggcccgccgcctcgccgcggccttcccgccgctcccgctcctcctctccctcctcgccgcgctccgcctcctcccctcgccgccgccgccgcgccccttcgacgcgctcatcaggtcgtacgcctccctccctcgcccctccctcgccgccgcggcgctcgcgttcgccgcgtcggccgggtacgccccctccgtcccggcctacaacgccgtcctcctcgcgctctccgacgcctcgctcccctccgcccgccgcttcctctcctccatgctccgccacggcgtggcgcccaacgtgtacacctacaacatcctcgtccgcgcgctctgcgcccgcggccgcctggaggaggcggtcggcgtcgtgggcgacatgcgtggcgcgggctgcgcgcccaacgccgtcacctacaacacgctcgtcgcggcgttctgcagggccggggagttggacggcgcggagagggtggtcagcttgatgagggaggagggcaatgcgaagccgaatctggtgaccttcaactcgatggtgaatgggctgtgtaaagcggggaggatggagggtgcacgcaaggtgttcgatgaaatggtgagggaggggttggcaccggatgtggtcagctacaacaccttgttaagtggttactgcaaggtgggttgcttacatgagtcattggcggtgttttcagagatgacacagagagggcttgtgccagatgtcgtgacgtttacgtcgctaatccatgcaacatgtaaggctggtaacttggagcaggcagtggctctggtggcgcagatgagggagaggggccttcggatgaacgaggtcactttcacggcacttatagatggtttctgcaagaaggggttcttggatgatgcattgcttgcagttgaggagatgaggaaatgtgggatccagccttcagtggtatgttacaatgcacttattaatgggtactgcaagttaggaagaatggatctagcaagagagctaatccgtgaaatggaggctaaaagagtgaaacccgatgttgtgacctatagtacgattatcagcggatactgtaaggttggcaatttggattctgcattccaattgaatcagaaaatgctcaaaaagggtgtgcttccagatgcaatcacctactcatcactcataaggggtctttgtgaagagaaaaggctcaatgatgcttgtgagctatttgagaacatgcttcaacttggtgtgcaacctgacgaatttacttatacaacactcattgatggccactgcaaggaaggaaatgttgagaaggctctttctctgcatgatgagatgataaggaagggagttctccctgatgttgtgacgtacagtgtgctcataaatgggcttagcaagtcagcacgtacaaaggaggcacatcggttactctttaaactgtatcatgaagatccggttccagacaatattaagtatgatgctctgatgctttgttgcagcaaagctgagtttaagagtgtagtggccctcctgaagggattttgcatgaaaggcttgatgaaggaagctgataaagtataccagtcgatgttggacagaaactggaagcttgatgggtctgtgtacagtatacttattcatgggcattgcaggggaggaaatgttaggaaggctctcagctttcataaacaaatgttgcggagtgggttttcccctaattcaacaagcaccatttcattggttaggggtttatttgaagaggggatggttgtggaagcagataatgccattcaggacttactgacttgttgtccactagcagatgcagaagcatcaaaggctcttattgacctcaatcggaaggaagggatggactacttccaagctcagggtgaaatctggtattcagaatcctccccctctgtggaatactggaattacatgatgaccatatgtcactttggagtttggagcacttatttttccatgcttcgcttaacaaaatga
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| Protein seq | MADAAAAAAGGGGSHRSVHHAHLAALLNPSPRSPPHPHPLQLHRRHLPLSLPAARRLAAAFPPLPLLLSLLAALRLLPSPPPPRPFDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGMDYFQAQGEIWYSESSPSVEYWNYMMTICHFGVWSTYFSMLRLTK |
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| Function | Pentatricopeptide repeat-containing protein At5g39710 [UniProtKB/Swiss-Prot:Q9FIX3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0026440 | OsLiXu_Ung0026440.01 | ChrUN-Ctg211 | 276972 | 279168 | + | NAM | ||
| CDS seq | atggcggacgccgccgccgccgccgccggcggcggaggcagccaccgttccgtccaccatgcgcacctcgcggcgctgctcaacccctccccgcgctcgccgccgcacccgcacccgctccagctccaccggcgccacctcccgctgtcccttcccgcggcccgccgcctcgccgcggccttcccgccgctcccgctcctcctctccctcctcgccgcgctccgcctcctcccctcgccgccgccgccgcgccccttcgacgcgctcatcaggtcgtacgcctccctccctcgcccctccctcgccgccgcggcgctcgcgttcgccgcgtcggccgggtacgccccctccgtcccggcctacaacgccgtcctcctcgcgctctccgacgcctcgctcccctccgcccgccgcttcctctcctccatgctccgccacggcgtggcgcccaacgtgtacacctacaacatcctcgtccgcgcgctctgcgcccgcggccgcctggaggaggcggtcggcgtcgtgggcgacatgcgtggcgcgggctgcgcgcccaacgccgtcacctacaacacgctcgtcgcggcgttctgcagggccggggagttggacggcgcggagagggtggtcagcttgatgagggaggagggcaatgcgaagccgaatctggtgaccttcaactcgatggtgaatgggctgtgtaaagcggggaggatggagggtgcacgcaaggtgttcgatgaaatggtgagggaggggttggcaccggatgtggtcagctacaacaccttgttaagtggttactgcaaggtgggttgcttacatgagtcattggcggtgttttcagagatgacacagagagggcttgtgccagatgtcgtgacgtttacgtcgctaatccatgcaacatgtaaggctggtaacttggagcaggcagtggctctggtggcgcagatgagggagaggggccttcggatgaacgaggtcactttcacggcacttatagatggtttctgcaagaaggggttcttggatgatgcattgcttgcagttgaggagatgaggaaatgtgggatccagccttcagtggtatgttacaatgcacttattaatgggtactgcaagttaggaagaatggatctagcaagagagctaatccgtgaaatggaggctaaaagagtgaaacccgatgttgtgacctatagtacgattatcagcggatactgtaaggttggcaatttggattctgcattccaattgaatcagaaaatgctcaaaaagggtgtgcttccagatgcaatcacctactcatcactcataaggggtctttgtgaagagaaaaggctcaatgatgcttgtgagctatttgagaacatgcttcaacttggtgtgcaacctgacgaatttacttatacaacactcattgatggccactgcaaggaaggaaatgttgagaaggctctttctctgcatgatgagatgataaggaagggagttctccctgatgttgtgacgtacagtgtgctcataaatgggcttagcaagtcagcacgtacaaaggaggcacatcggttactctttaaactgtatcatgaagatccggttccagacaatattaagtatgatgctctgatgctttgttgcagcaaagctgagtttaagagtgtagtggccctcctgaagggattttgcatgaaaggcttgatgaaggaagctgataaagtataccagtcgatgttggacagaaactggaagcttgatgggtctgtgtacagtatacttattcatgggcattgcaggggaggaaatgttaggaaggctctcagctttcataaacaaatgttgcggagtgggttttcccctaattcaacaagcaccatttcattggttaggggtttatttgaagaggggatggttgtggaagcagataatgccattcaggacttactgacttgttgtccactagcagatgcagaagcatcaaaggctcttattgacctcaatcggaaggaagggatggactacttccaagctcagggtgaaatctggtattcagaatcctccccctctgtggaatactggaattacatgatgaccatatgtcactttggagtttggagcacttatttttccatgcttcgcttaacaaaatga
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| Protein seq | MADAAAAAAGGGGSHRSVHHAHLAALLNPSPRSPPHPHPLQLHRRHLPLSLPAARRLAAAFPPLPLLLSLLAALRLLPSPPPPRPFDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGMDYFQAQGEIWYSESSPSVEYWNYMMTICHFGVWSTYFSMLRLTK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.187031 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0152500 | SBH | 0.164296 | 0.398721 | 0.233134 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05920 | SBH | 0.114974 | 0.234538 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0152500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0003910 | SBH | 0.088196 | 0.0 | 0.883298 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0003800 | SBH | 0.0 | 0.0 | 0.381461 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0003740 | SBH | 0.000000 | 2.042652 | 0.461070 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0003840 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0003750 | SBH | 0.0 | 0.000000 | 1.574871 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0045200 | SBH | 0.944745 | 1.715851 | 2.4017175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0003690 | SBH | 0.044919 | 0.148930 | 0.057217 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0047000 | SBH | 0.0530915 | 0.330622 | 0.941417 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0003870 | RBH | 0.038461 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0003730 | RBH | 0.131413 | 2.902057 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0003790 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0003770 | RBH | 0.000000 | 0.112237 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003610 | RBH | 0.0 | 1.343672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003610 | RBH | 0.150609 | 0.427199 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0003800 | RBH | 0.0 | 1.915240 | 1.692409 |
