Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0023820 | OGI:99030630 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg196:185915-187016 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaatccttagagaactggcaggaatatgatgttgaacaggtaacaccggctaattttcccgtgctagatgcaatggaaatcattgattgtccaaaattgacagctatgcctaatgctccggttctcaagtcgttaagtgtgataggaaacaaatattgattggcttatcgtcaagtgttagtaatctgtcgtatctatatcttggtgcaagtcaagggagtttagagaggaaaaaaacactaatctatcactataaagaaaacctggaaggaaccacagattcaaaggatcatgttttggcccatcacttttcatcatggggctcactcactaaattacacctacagggattcagtgctctagcaccagaagatatacaaaatataagtggtcacgtgatgtctgtgcagaacttagatctaatttcctgtgactgcttcatccatatgatacattgcagtcaccactgtggttctggaaatcatttgcgtgcctgcagcacttaacaatcgagtactgtaacagcctcaccttttggccaggggaggagttccaaagcttgacttcattaaaacgactcgacattagatattgcaacaacttcacgggtatgccacctgcccaagtctcagtgaagtcctttgaagatgagggcatgcataatttggaacggatagaaatcgaattctgctacaacttatcgtatctgaggatatgcagctgcaatgtacttgaggacctacctgaaggactgggttgcctgggcgctctaagaagtctgtcaattgattataacccaagactgaagtccctgcctcccagcattcaacgtcttcaaatctgaccaggctctactgggagctaatgacagcctaacaacattacccgaagggatgcataatctgacagctctcaatgatctggctatttggaactgccctagtttaaagctttaccggaaggtctccagcagaggctgcacagcctggaaaagctctttattagacaatgccctacgctggtgagaagatgcaaacgtggaggagactactggagcaaagttaaggatattccagatttacgtgtgacaggggactag
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| CDS seq | atggaatccttagagaactggcaggaatatgatgttgaacaggtaacaccggctaattttcccgtgctagatgcaatggaaatcattgattgtccaaaattgacagctatgcctaatgctccggttctcaagtcgttaaggagtttagagaggaaaaaaacactaatctatcactataaagaaaacctggaaggaaccacagattcaaaggatcatgttttggcccatcacttttcatcatggggctcactcactaaattacacctacagggattcagtgctctagcaccagaagatatacaaaatataagtggtcactcaccactgtggttctggaaatcatttgcgtgcctgcagcacttaacaatcgagtactgtaacagcctcaccttttggccaggggaggagttccaaagcttgacttcattaaaacgactcgacattagatattgcaacaacttcacgggtatgccacctgcccaagtctcagtgaagtcctttgaagatgagggcatgcataatttggaacggatagaaatcgaattctgctacaacttatcgtatctgaggatatgcagctgcaatgtacttgaggacctacctgaaggactgggttgcctgggcgctctaagaagtcttccctgcctcccagcattcaacgtcttcaaatctgaccaggctctactgggagctaatgacagcctaacaacattacccgaagggatgcataatctgacagctctcaatgatctggctatttggaactgccctagtttaaagctttaccggaagcagaggctgcacagcctggaaaagctctttattagacaatgccctacgctggtgagaagatgcaaacgtggaggagactactggagcaaagttaaggatattccagatttacgtgtgacaggggactag
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| Protein seq | MESLENWQEYDVEQVTPANFPVLDAMEIIDCPKLTAMPNAPVLKSLRSLERKKTLIYHYKENLEGTTDSKDHVLAHHFSSWGSLTKLHLQGFSALAPEDIQNISGHSPLWFWKSFACLQHLTIEYCNSLTFWPGEEFQSLTSLKRLDIRYCNNFTGMPPAQVSVKSFEDEGMHNLERIEIEFCYNLSYLRICSCNVLEDLPEGLGCLGALRSLPCLPAFNVFKSDQALLGANDSLTTLPEGMHNLTALNDLAIWNCPSLKLYRKQRLHSLEKLFIRQCPTLVRRCKRGGDYWSKVKDIPDLRVTGD |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0023820 | OsLiXu_Ung0023820.01 | ChrUN-Ctg196 | 185915 | 187016 | + | NAM | ||
| CDS seq | atggaatccttagagaactggcaggaatatgatgttgaacaggtaacaccggctaattttcccgtgctagatgcaatggaaatcattgattgtccaaaattgacagctatgcctaatgctccggttctcaagtcgttaaggagtttagagaggaaaaaaacactaatctatcactataaagaaaacctggaaggaaccacagattcaaaggatcatgttttggcccatcacttttcatcatggggctcactcactaaattacacctacagggattcagtgctctagcaccagaagatatacaaaatataagtggtcactcaccactgtggttctggaaatcatttgcgtgcctgcagcacttaacaatcgagtactgtaacagcctcaccttttggccaggggaggagttccaaagcttgacttcattaaaacgactcgacattagatattgcaacaacttcacgggtatgccacctgcccaagtctcagtgaagtcctttgaagatgagggcatgcataatttggaacggatagaaatcgaattctgctacaacttatcgtatctgaggatatgcagctgcaatgtacttgaggacctacctgaaggactgggttgcctgggcgctctaagaagtcttccctgcctcccagcattcaacgtcttcaaatctgaccaggctctactgggagctaatgacagcctaacaacattacccgaagggatgcataatctgacagctctcaatgatctggctatttggaactgccctagtttaaagctttaccggaagcagaggctgcacagcctggaaaagctctttattagacaatgccctacgctggtgagaagatgcaaacgtggaggagactactggagcaaagttaaggatattccagatttacgtgtgacaggggactag
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| Protein seq | MESLENWQEYDVEQVTPANFPVLDAMEIIDCPKLTAMPNAPVLKSLRSLERKKTLIYHYKENLEGTTDSKDHVLAHHFSSWGSLTKLHLQGFSALAPEDIQNISGHSPLWFWKSFACLQHLTIEYCNSLTFWPGEEFQSLTSLKRLDIRYCNNFTGMPPAQVSVKSFEDEGMHNLERIEIEFCYNLSYLRICSCNVLEDLPEGLGCLGALRSLPCLPAFNVFKSDQALLGANDSLTTLPEGMHNLTALNDLAIWNCPSLKLYRKQRLHSLEKLFIRQCPTLVRRCKRGGDYWSKVKDIPDLRVTGD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0380300 | SBH | 0.156068 | 0.080026 | 0.317876 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g31550 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0380300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0015110 | SBH | 0.0 | 2.145655 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0015110 | SBH | 0.0 | 1.463589 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014950 | SBH | 0.0 | 2.575464 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014980 | SBH | 0.0 | 0.049658 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0015140 | SBH | 0.0 | 0.941152 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0280000 | SBH | 0.026408 | 1.7048925 | 0.1287225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014740 | SBH | 0.085246 | 0.542059 | 0.018264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0291200 | SBH | 0.0623865 | 0.7907405 | 0.113274 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014930 | SBH | 0.000000 | 0.099925 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014960 | SBH | 0.0 | 2.067600 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014970 | SBH | 0.0 | 5.192632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0015030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0015090 | SBH | 0.0 | 1.132802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014640 | SBH | 0.091366 | 3.895263 | 0.723659 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014910 | SBH | 0.0 | 16.132452 | 0.672282 |
