Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0017420 | OGI:99026070 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg133:25522-26918 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGGTTGTTCACCTTTTTTGTTTTTCGGATTCATTATCTCTCCATTTGTCCACATTGTTGTTGATATGTCTTCTAAAATTGTGGACACCATCATCAACTTGCAGAACATCCAGAACCTTGCAAGTTTCGGCGAAGAACTTGGCGAGGCGAACCCCAAAGCAATTCACATCCTCCATCTGAAACTGCAAAACCACACGTTTCAGATGATTCTGCAAGCAGTCGAACCCGCAGCCAGTCAAACCAGGCAGGTCGGCAACTTCTTCAAATTCAGACGATTCATCATCGTCGTCAAGCATAGTTCTTCTATTGTTGAAGAGATCCCTGGAAGTATTAAATTCCGTAAATAGTAGCGACTTTCTTCCACGGGCACGGCGACTTCTAAAGGACATAAACTTGCTACTCGTACTCTCCAATGCGAGTTTCAGTTCATGGATTACAGGGCAGCAACGGAGCAAGGTTGCAACAGACATGGCTGAACCTTTCTTGCTGTGGTGCCAGCCATCTGTCTCAGGGTCACATTCCACCTCCAGATGTTTCAGATTTTCAAACACAATATTGTCGCCATTATCGAGTAATGGAATGCTTCCCATTGCTGGAACATTCAATTTGAGTGACTTCGTGTTGCGAAGGCTGCCAAGAAATTTCCAGAACGTAGAGGCAATGGCGTCTGACTCACCAGGAGAGTACCATATTTGGAGGTTCAGATAAACATGCGTCAGGTCAGTTGCTTTGGATTTCATGGCGAGATCGACGAGTGTTCCTGTGTATCTGAAGGTGACAATACATGGCGCGTAGAGGTCGATGGCTCTGACCTCTGATGCCTTCGATGCAGGTTATGTCGTTGTCCAGCGTGAGGGACGTTAGACTTGGGCAGTGGAGGACGAAGCGGCCGTCGTCGAAGTCGCGTTCGGGGTACCAGCAGAAGCTATGGCGGGCGATGTGCAGGGTGGCCAGGTTCGGCGCGGCGGAGATCAGGGTCGCCAGATCGCGCATTGGCGACGAGCACCTCTCCAGCCGCAGCACAGCAAGGCGTGGGAAGGGGAATGGCGCGGCGTGGTCCGGCGGCGGCAGCTCGATCCGGCAGCTCGCGAGCTCCAAGATGCGGATGGTGTCGCCGGGGATGGAGCTAATAAGGCGGAGACGGTATACGTAGGTCAGGGAGCTCCTGTCGTCATTGCCGCAGTCGATCTGCACGCGCAGCTCCTCGGTACGGCGCATCGCCTGTTCGAAGAGCACGCCGTCAATCACGCAGAACTCGTGGTGGCTGTATCGGTCGCCGCCGGCCAGGACCTCCTGGCAGCGTCGTTCTTCGCTCCCCGTCGCGAGCACGGACAGCTTGGTGACGGGATGCCGCCCCGGCGCTCGGAGTGACGCCGTGACGTCGTGGTAGAGCAT
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| CDS seq | ATGCTCTACCACGACGTCACGGCGTCACTCCGAGCGCCGGGGCGGCATCCCGTCACCAAGCTGTCCGTGCTCGCGACGGGGAGCGAAGAACGACGCTGCCAGGAGGTCCTGGCCGGCGGCGACCGATACAGCCACCACGAGTTCTGCGTGATTGACGGCGTGCTCTTCGAACAGGCGATGCGCCGTACCGAGGAGCTGCGCGTGCAGATCGACTGCGGCAATGACGACAGGAGCTCCCTGACCTACGTATACCGTCTCCGCCTTATTAGCTCCATCCCCGGCGACACCATCCGCATCTTGGAGCTCGCGAGCTGCCGGATCGAGCTGCCGCCGCCGGACCACGCCGCGCCATTCCCCTTCCCACGCCTTGCTGTGCTGCGGCTGGAGAGGTGCTCGTCGCCAATGCGCGATCTGGCGACCCTGATCTCCGCCGCGCCGAACCTGGCCACCCTGCACATCGCCCGCCATAGCTTCTGCTGGTACCCCGAACGCGACTTCGACGACGGCCGCTTCGTCCTCCACTGCCCAAGTCTAACGTCCCTCACGCTGGACAACGACATAACCTGCATCGAAGGCATCAGAGACGCCATTGCCTCTACGTTCTGGAAATTTCTTGGCAGCCTTCGCAACACGAAGTCACTCAAATTGAATGTTCCAGCAATGGGAAGCATTCCATTACTCGATAATGGCGACAATATTGTGTTTGAAAATCTGAAACATCTGGAGGTGGAATGTGACCCTGAGACAGATGGCTGGCACCACAGCAAGAAAGGTTCAGCCATGTCTGTTGCAACCTTGCTCCGTTGCTGCCCTGTAATCCATGAACTGAAACTCGCATTGGAGAGTACGAGTAGCAAGTTTATGTCCTTTAGAAGTCGCCGTGCCCGTGGAAGAAAGTCGCTACTATTTACGGAATTTAATACTTCCAGGGATCTCTTCAACAATAGAAGAACTATGCTTGACGACGATGATGAATCGTCTGAATTTGAAGAAGTTGCCGACCTGCCTGGTTTGACTGGCTGCGGGTTCGACTGCTTGCAGAATCATCTGAAACGTGTGGTTTTGCAGTTTCAGATGGAGGATGTGAATTGCTTTGGGGTTCGCCTCGCCAAGTTCTTCGCCGAAACTTGCAAGGTTCTGGATGTTCTGCAAGTTGATGATGGTGTCCACAATTTTAGAAGACATATCAACAACAATGTGGACAAATGGAGAGATAATGAATCCGAAAAACAAAAAAGGTGA
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| Protein seq | MLYHDVTASLRAPGRHPVTKLSVLATGSEERRCQEVLAGGDRYSHHEFCVIDGVLFEQAMRRTEELRVQIDCGNDDRSSLTYVYRLRLISSIPGDTIRILELASCRIELPPPDHAAPFPFPRLAVLRLERCSSPMRDLATLISAAPNLATLHIARHSFCWYPERDFDDGRFVLHCPSLTSLTLDNDITCIEGIRDAIASTFWKFLGSLRNTKSLKLNVPAMGSIPLLDNGDNIVFENLKHLEVECDPETDGWHHSKKGSAMSVATLLRCCPVIHELKLALESTSSKFMSFRSRRARGRKSLLFTEFNTSRDLFNNRRTMLDDDDESSEFEEVADLPGLTGCGFDCLQNHLKRVVLQFQMEDVNCFGVRLAKFFAETCKVLDVLQVDDGVHNFRRHINNNVDKWRDNESEKQKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0017420 | OsLiXu_Ung0017420.01 | ChrUN-Ctg133 | 25522 | 26918 | - | NAM | ||
| CDS seq | ATGCTCTACCACGACGTCACGGCGTCACTCCGAGCGCCGGGGCGGCATCCCGTCACCAAGCTGTCCGTGCTCGCGACGGGGAGCGAAGAACGACGCTGCCAGGAGGTCCTGGCCGGCGGCGACCGATACAGCCACCACGAGTTCTGCGTGATTGACGGCGTGCTCTTCGAACAGGCGATGCGCCGTACCGAGGAGCTGCGCGTGCAGATCGACTGCGGCAATGACGACAGGAGCTCCCTGACCTACGTATACCGTCTCCGCCTTATTAGCTCCATCCCCGGCGACACCATCCGCATCTTGGAGCTCGCGAGCTGCCGGATCGAGCTGCCGCCGCCGGACCACGCCGCGCCATTCCCCTTCCCACGCCTTGCTGTGCTGCGGCTGGAGAGGTGCTCGTCGCCAATGCGCGATCTGGCGACCCTGATCTCCGCCGCGCCGAACCTGGCCACCCTGCACATCGCCCGCCATAGCTTCTGCTGGTACCCCGAACGCGACTTCGACGACGGCCGCTTCGTCCTCCACTGCCCAAGTCTAACGTCCCTCACGCTGGACAACGACATAACCTGCATCGAAGGCATCAGAGACGCCATTGCCTCTACGTTCTGGAAATTTCTTGGCAGCCTTCGCAACACGAAGTCACTCAAATTGAATGTTCCAGCAATGGGAAGCATTCCATTACTCGATAATGGCGACAATATTGTGTTTGAAAATCTGAAACATCTGGAGGTGGAATGTGACCCTGAGACAGATGGCTGGCACCACAGCAAGAAAGGTTCAGCCATGTCTGTTGCAACCTTGCTCCGTTGCTGCCCTGTAATCCATGAACTGAAACTCGCATTGGAGAGTACGAGTAGCAAGTTTATGTCCTTTAGAAGTCGCCGTGCCCGTGGAAGAAAGTCGCTACTATTTACGGAATTTAATACTTCCAGGGATCTCTTCAACAATAGAAGAACTATGCTTGACGACGATGATGAATCGTCTGAATTTGAAGAAGTTGCCGACCTGCCTGGTTTGACTGGCTGCGGGTTCGACTGCTTGCAGAATCATCTGAAACGTGTGGTTTTGCAGTTTCAGATGGAGGATGTGAATTGCTTTGGGGTTCGCCTCGCCAAGTTCTTCGCCGAAACTTGCAAGGTTCTGGATGTTCTGCAAGTTGATGATGGTGTCCACAATTTTAGAAGACATATCAACAACAATGTGGACAAATGGAGAGATAATGAATCCGAAAAACAAAAAAGGTGA
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| Protein seq | MLYHDVTASLRAPGRHPVTKLSVLATGSEERRCQEVLAGGDRYSHHEFCVIDGVLFEQAMRRTEELRVQIDCGNDDRSSLTYVYRLRLISSIPGDTIRILELASCRIELPPPDHAAPFPFPRLAVLRLERCSSPMRDLATLISAAPNLATLHIARHSFCWYPERDFDDGRFVLHCPSLTSLTLDNDITCIEGIRDAIASTFWKFLGSLRNTKSLKLNVPAMGSIPLLDNGDNIVFENLKHLEVECDPETDGWHHSKKGSAMSVATLLRCCPVIHELKLALESTSSKFMSFRSRRARGRKSLLFTEFNTSRDLFNNRRTMLDDDDESSEFEEVADLPGLTGCGFDCLQNHLKRVVLQFQMEDVNCFGVRLAKFFAETCKVLDVLQVDDGVHNFRRHINNNVDKWRDNESEKQKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16160 | SBH | 0.114436 | 0.135586 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005080 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005720 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005320 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005140 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005170 | SBH | 0.979006 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0134300 | SBH | 0.2501785 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005210 | SBH | 0.077281 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0141000 | SBH | 0.110661 | 0.0118695 | 0.0057455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005380 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005120 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004950 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005280 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005290 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005110 | SBH | 0.000000 | 0.0 | 0.0 |
