Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0016820 | OGI:04027980 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg128:441926-442525 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttccatcagttcttggagccaaatctccccctgctgcttctcatcctgcatcatttcttctctgcagcctcctcatctttctatcctgcaacacaataacaccctcatcagcacagcccagcaacagatcagagaccgatttacaagctctactctgcttcaagcaaagcataaccaacgaccccaccggtgctttcagctcatggaacatatcgctacacttctgcagatggaatggtgtcacatgtggcaggacatctccagctcatgttgtctccataaaccttacctccatgaagctcagtggagttctgccagcttgcatgggcaacctcacctcgttgcaaactctggttcttgacagaaacaatcttgaaggtaccatccctgaatccttagcaagaagtttatcactcattgagctaaatctttcgggtaacttcctatctggacagatccctgctagtttgttcaatggctcatccaaacttgtcactgttgatctccaaatgaattctttttctggcataattccccctccccataagatggacactcttcgatttcttggtcttactggaaacttgctttcttga
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| CDS seq | atgtttccatcagttcttggagccaaatctccccctgctgcttctcatcctgcatcatttcttctctgcagcctcctcatctttctatcctgcaacacaataacaccctcatcagcacagcccagcaacagatcagagaccgatttacaagctctactctgcttcaagcaaagcataaccaacgaccccaccggtgctttcagctcatggaacatatcgctacacttctgcagatggaatggtgtcacatgtggcaggacatctccagctcatgttgtctccataaaccttacctccatgaagctcagtggagttctgccagcttgcatgggcaacctcacctcgttgcaaactctggttcttgacagaaacaatcttgaaggtaccatccctgaatccttagcaagaagtttatcactcattgagctaaatctttcgggtaacttcctatctggacagatccctgctagtttgttcaatggctcatccaaacttgtcactgttgatctccaaatgaattctttttctggcataattccccctccccataagatggacactcttcgatttcttggtcttactggaaacttgctttcttga
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| Protein seq | MFPSVLGAKSPPAASHPASFLLCSLLIFLSCNTITPSSAQPSNRSETDLQALLCFKQSITNDPTGAFSSWNISLHFCRWNGVTCGRTSPAHVVSINLTSMKLSGVLPACMGNLTSLQTLVLDRNNLEGTIPESLARSLSLIELNLSGNFLSGQIPASLFNGSSKLVTVDLQMNSFSGIIPPPHKMDTLRFLGLTGNLLS |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0016820 | OsLiXu_Ung0016820.01 | ChrUN-Ctg128 | 441926 | 442525 | + | NAM | ||
| CDS seq | atgtttccatcagttcttggagccaaatctccccctgctgcttctcatcctgcatcatttcttctctgcagcctcctcatctttctatcctgcaacacaataacaccctcatcagcacagcccagcaacagatcagagaccgatttacaagctctactctgcttcaagcaaagcataaccaacgaccccaccggtgctttcagctcatggaacatatcgctacacttctgcagatggaatggtgtcacatgtggcaggacatctccagctcatgttgtctccataaaccttacctccatgaagctcagtggagttctgccagcttgcatgggcaacctcacctcgttgcaaactctggttcttgacagaaacaatcttgaaggtaccatccctgaatccttagcaagaagtttatcactcattgagctaaatctttcgggtaacttcctatctggacagatccctgctagtttgttcaatggctcatccaaacttgtcactgttgatctccaaatgaattctttttctggcataattccccctccccataagatggacactcttcgatttcttggtcttactggaaacttgctttcttga
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| Protein seq | MFPSVLGAKSPPAASHPASFLLCSLLIFLSCNTITPSSAQPSNRSETDLQALLCFKQSITNDPTGAFSSWNISLHFCRWNGVTCGRTSPAHVVSINLTSMKLSGVLPACMGNLTSLQTLVLDRNNLEGTIPESLARSLSLIELNLSGNFLSGQIPASLFNGSSKLVTVDLQMNSFSGIIPPPHKMDTLRFLGLTGNLLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0227200 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g15600 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0227200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004980 | SBH | 0.244290 | 0.967602 | 2.680362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005610 | SBH | 0.153115 | 0.776981 | 0.993871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005230 | SBH | 0.295748 | 0.296784 | 3.057565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005050 | SBH | 0.056989 | 0.043205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005010 | SBH | 2.133982 | 0.0 | 0.572953 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0128500 | RBH | 0.370506 | 3.8667275 | 0.0338725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005040 | SBH | 0.061083 | 0.000000 | 0.038774 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134600 | SBH | 0.413163 | 2.8508155 | 0.5746895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004870 | SBH | 0.024502 | 0.107929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005240 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004820 | RBH | 0.0 | 0.0 | 0.113852 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005110 | SBH | 0.111805 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005160 | SBH | 0.184732 | 0.0 | 0.105294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004950 | SBH | 0.0 | 0.000000 | 0.244750 |
