Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0009000 | OGI:99019770 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg76:30121-31104 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACATAGCAGCTGGATAGTTTTGTATTATCCATTGTGCCACATATTCCTTAATAGAATCCAGTGGTCTACCCTTCAACATGGCAGCTATATTCTCATGGGTCGCGAGGTAAGTCTGCAGCTCAAGTCGAACCATGACAGGGTATTCCGTCATCTCATCAATTATCTTGAATAGGGATTTATTTGGATGTGTCATATGTGTGAAACGCATGGTTTCAGACATATTATCCATAGCCCCTGTTATCTCATAAACCACATTATCATCAGCTCTAACTCTTTTACCTTTATCAGTTTTTCTACCTTTTGCACGCCTAGAAGATGAGCTACTTCCAGTATTGTTCTCTTGATCTGGAAGACAATCTGAGTCATAATTTGATGAAGGGTCAACATCACCAGGACTGCCATTTTTATCACCAATAAAATCATCATCTTCCATTGGACAGTCATATGGTGTTTGCATAACATTAAATTCCCCTGTTGCATGCTTGTCTTGAAAAATAAACTCCATTTCATCATACCAACGTATGGGGACGTTAATGAATTTAGCCCTTTTATCTTTGGCCTACACATGACAATAAAATGGTAAGAAACATAGACATCCATATAGTGTAAACACGATAGTTATTTGCTAGGAAAGAATAGTTAGAACACTCACATTAGTCATTCGAACAACTTCAGTCTCATCATATAGGATTTTTTTCTCAACGTCATCAAAATTGGCCCCGCTCAAATTCTTTGCCTCCATAATCACCTTCCACTGAGCCTTCAACTTGTGAAACTTGTGATAAACTTGTCGACTTGTGAAGTTTGTGTGATACTTGCCATTAATTTGCTTTGCACATTCCTCATGATGGACTTCTTTAAATACAAGTTGTCTTCCATCAGCCAGTATCTTCTCCTTGTAGTATCGCAACATTTCCTCAACAACCTGGGGCTGCCAAACCACATTGTTCCCTGCCATATTGCTGCAAAAAGTATAAAACAT
More
|
||||||||||
| CDS seq | ATGTTTTATACTTTTTGCAGCAATATGGCAGGGAACAATGTGGTTTGGCAGCCCCAGGTTGTTGAGGAAATGTTGCGATACTACAAGGAGAAGATACTGGCTGATGGAAGACAACTTGTATTTAAAGAAGTCCATCATGAGGAATGTGCAAAGCAAATTAATGGCAAGTATCACACAAACTTCACAAGTCGACAAGTTTATCACAAGTTTCACAAGTTGAAGGCTCAGTGGAAGGTGATTATGGAGGCAAAGAATTTGAGCGGGGCCAATTTTGATGACGTTGAGAAAAAAATCCTATATGATGAGACTGAAGTTGTTCGAATGACTAATGCCAAAGATAAAAGGGCTAAATTCATTAACGTCCCCATACGTTGGTATGATGAAATGGAGTTTATTTTTCAAGACAAGCATGCAACAGGGGAATTTAATGTTATGCAAACACCATATGACTGTCCAATGGAAGATGATGATTTTATTGGTGATAAAAATGGCAGTCCTGGTGATGTTGACCCTTCATCAAATTATGACTCAGATTGTCTTCCAGATCAAGAGAACAATACTGGAAGTAGCTCATCTTCTAGGCGTGCAAAAGGTAGAAAAACTGATAAAGGTAAAAGAGTTAGAGCTGATGATAATGTGGTTTATGAGATAACAGGGGCTATGGATAATATGTCTGAAACCATGCGTTTCACACATATGACACATCCAAATAAATCCCTATTCAAGATAATTGATGAGATGACGGAATACCCTGTCATGGTTCGACTTGAGCTGCAGACTTACCTCGCGACCCATGAGAATATAGCTGCCATGTTGAAGGGTAGACCACTGGATTCTATTAAGGAATATGTGGCACAATGGATAATACAAAACTATCCAGCTGCTATGTAA
More
|
||||||||||
| Protein seq | MFYTFCSNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVMQTPYDCPMEDDDFIGDKNGSPGDVDPSSNYDSDCLPDQENNTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTHPNKSLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0009000 | OsLiXu_Ung0009000.01 | ChrUN-Ctg76 | 30121 | 31104 | - | NAM | ||
| CDS seq | ATGTTTTATACTTTTTGCAGCAATATGGCAGGGAACAATGTGGTTTGGCAGCCCCAGGTTGTTGAGGAAATGTTGCGATACTACAAGGAGAAGATACTGGCTGATGGAAGACAACTTGTATTTAAAGAAGTCCATCATGAGGAATGTGCAAAGCAAATTAATGGCAAGTATCACACAAACTTCACAAGTCGACAAGTTTATCACAAGTTTCACAAGTTGAAGGCTCAGTGGAAGGTGATTATGGAGGCAAAGAATTTGAGCGGGGCCAATTTTGATGACGTTGAGAAAAAAATCCTATATGATGAGACTGAAGTTGTTCGAATGACTAATGCCAAAGATAAAAGGGCTAAATTCATTAACGTCCCCATACGTTGGTATGATGAAATGGAGTTTATTTTTCAAGACAAGCATGCAACAGGGGAATTTAATGTTATGCAAACACCATATGACTGTCCAATGGAAGATGATGATTTTATTGGTGATAAAAATGGCAGTCCTGGTGATGTTGACCCTTCATCAAATTATGACTCAGATTGTCTTCCAGATCAAGAGAACAATACTGGAAGTAGCTCATCTTCTAGGCGTGCAAAAGGTAGAAAAACTGATAAAGGTAAAAGAGTTAGAGCTGATGATAATGTGGTTTATGAGATAACAGGGGCTATGGATAATATGTCTGAAACCATGCGTTTCACACATATGACACATCCAAATAAATCCCTATTCAAGATAATTGATGAGATGACGGAATACCCTGTCATGGTTCGACTTGAGCTGCAGACTTACCTCGCGACCCATGAGAATATAGCTGCCATGTTGAAGGGTAGACCACTGGATTCTATTAAGGAATATGTGGCACAATGGATAATACAAAACTATCCAGCTGCTATGTAA
More
|
|||||||
| Protein seq | MFYTFCSNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVMQTPYDCPMEDDDFIGDKNGSPGDVDPSSNYDSDCLPDQENNTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTHPNKSLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496700 | SBH | 0.000000 | 0.0 | 0.671978 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38800 | SBH | 0.342970 | 0.115744 | 0.062748 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0496700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012630 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020670 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020550 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012430 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015290 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0229900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015080 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0244400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015640 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015240 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G015680 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015430 | SBH | 0.0 | 0.0 | 0.0 |
