Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0008440 | OGI:99019330 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg68:32470-34820 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGACTGCAACCTTCAGCTCATGTTCATATAAACCATTCTGGTAAGTACAAGCTAATGAGAGAATACATTGTCCATTAACACTAGAGAGAAGCTAGCTAGTGAGATAACACAGAATTCAGATATGCAGCACATGGTTAAGCCAGTTTGCATATTGTGTCTACAGTGTAGCCTCCTCTATGGCGTTCATCTTGCAGCAGCCGTTGCTTCTGCCGGTGACGGCAACGGCGGGGACCAGTTTGCCTACTCCGGCTTTGCCGGAGTGAAGGACCTCACCCTCGACGGCACGGCCATGGTCACACCGGATGGCCTACTCGAGCTGACCAATGGCAAGCCGCAGGTTAAAGGCCACGCATTCCATCCGACGCCGCTGCGCTTCCAGGAGTCGTCGTCACCAGAAGGCGGGGAGAAGAAGGCAGCAGTGCGGTCTTTCTCGGCGTCCTTTGTGTTCGGCATCGTCACTGCCTCCCCTGGTGTCGGCGGCCATGGCATCGCCCTCGTCATCACCCCAACCAAGGACCTCTCCTCCGGGCTCGCCAGCACATACCTGGGATTCCTCAACAGATCAAGCAACGGCGACAACAGAAATCACATCTTCGCGGTTGAGCTTGATACCATCCAGAGCCCCGAATTCTCCGACATCGACGACAACCACGTCGGCATCGACATCAATAGCCTTGTGTCTTCAAATGCCTCTGATGCCGGCTACTATGATGACAACACCGGTGAGTTCAAGAGTCTAACACTGGTTAGTGGGAAAGCCATGCAAGTATGGGTGGACTATGACGACGATGCTACACAGATTGACGTGAGGCTTGCTCCGGTAGGAATCAAGAAGCCCATGAAGCCATTGGTCTCTACGAGATTCAACCTCTCAACAGTGATCACCGATGAAGCATATGTGGGCTTCTCAGCGTCGATAGGCACAATGACCTCGCAACACTACGTGCTCGGCTGGAGCTTCGGTGTGGGCACGCAAGCTCCGGCCATTGACATGGACAAGCTTCCCAAGTTACCTGGCAGAAGAAGCAAGAAGTCTTATCCGCCCAAGACCATGGTGATAGCTCTACCAATAGTCTCGGTGGTGCTTGTGATTGTCGTTGCTGCTGGTGTTTTTCTACTGATTAAGAGGAAGTTTCAGAGATATGTCGAACTGCGTGAAGATTGGGAGCTTGAGTTTGGAGCACATAGACTGTCATACAAGGATTTGCTTCAGGCAACAGAACGGTTCAATAACAAGAACTTGCTTGGAATTGGAGGGTTCGGGAGGGTGTACAAAGGAGTGCTTCCTACTTCTAGTTCGGAGGTTGCTGTGAAGAGGGTATCACACGACTCAAGGCAAGGGATAAAGGAGTTTGTTGCTGAGGTAGCAAGCATTGGTCGCCTCCGGCACCGCAACCTCGTACAACTGCTTGGTTACTGTCGGCTCAAAGAAGAACTTCTTTTGGTCTACGACTATATGCCAAATGGTAGTCTCGACAAATATCTGTACAGCCATGATGACAAGCCTACTCTGAATTGGGCTCAAAGGTTCCAGATTATAAAAGGTATTGCATCTGGCTTGCTTTATCTTCACGAGGAGTGGGAGCAAATTGTTATCCATCGGGACATCAAACCAAGCAATGTGCTCCTTGACAACGACATGAATGGACGGCTAGGTGATTTCGGGCTCGCAAGGCTCTACAACCGTGACACCGAGCTACAAACAACAGTTGTTGCAGGTACCTTTGGTTATATGGCCCCCGAATTAGCACTAACCGGGAAGGCATCCCCTCTTACCGACGTGTTCGCCTTTGGCGCATTTCTCCTTGAGGTCACCAGTGGACGAAGGCCTGTCGAGCAAGACATCGAAGGGCATCGACTCCTGCTGACGGACTGGGTGTTTGAGAATTGCAGCAAGGAACAGATCCTTGCTGTTATTGACCCAAGACTTAACGGCAACATTAACATTAGTGAAGCAAGTTTAGTATTGAAGTTAGGGCTCTTGTGCTCGCACCCAATGTCTAATGTAAGGCCAACCATGCGACAAGTTGTGCAGTACCTCAACGGAGATATGCCCCTCCCAGAGATGTCACCAATGCGCTTTACTTTCAGCCTGTCAGCACTCATGCAGAACCAAGGGTTTGACTCGTTGTTGAAGAGTTTAGGCACGATTAGTAATCTTTCAATTGGGAGATGACAATGCAAGATGATGCATTTCTGTTCATAAGTAGAATCTGTTTCTTTTCACCACATTAGGTCAGAGTTTATTGTAGTTATTCTTAGCTGAAGTGCACTCTCTCCAGCCTTGAGTTGAGAGATTTACTAATGTGCCTATGCATGTTTCTTTCTTGTGACAAAGTTTATCAATTCCT
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| CDS seq | ATGCAGCACATGGTTAAGCCAGTTTGCATATTGTGTCTACAGTGTAGCCTCCTCTATGGCGTTCATCTTGCAGCAGCCGTTGCTTCTGCCGGTGACGGCAACGGCGGGGACCAGTTTGCCTACTCCGGCTTTGCCGGAGTGAAGGACCTCACCCTCGACGGCACGGCCATGGTCACACCGGATGGCCTACTCGAGCTGACCAATGGCAAGCCGCAGGTTAAAGGCCACGCATTCCATCCGACGCCGCTGCGCTTCCAGGAGTCGTCGTCACCAGAAGGCGGGGAGAAGAAGGCAGCAGTGCGGTCTTTCTCGGCGTCCTTTGTGTTCGGCATCGTCACTGCCTCCCCTGGTGTCGGCGGCCATGGCATCGCCCTCGTCATCACCCCAACCAAGGACCTCTCCTCCGGGCTCGCCAGCACATACCTGGGATTCCTCAACAGATCAAGCAACGGCGACAACAGAAATCACATCTTCGCGGTTGAGCTTGATACCATCCAGAGCCCCGAATTCTCCGACATCGACGACAACCACGTCGGCATCGACATCAATAGCCTTGTGTCTTCAAATGCCTCTGATGCCGGCTACTATGATGACAACACCGGTGAGTTCAAGAGTCTAACACTGGTTAGTGGGAAAGCCATGCAAGTATGGGTGGACTATGACGACGATGCTACACAGATTGACGTGAGGCTTGCTCCGGTAGGAATCAAGAAGCCCATGAAGCCATTGGTCTCTACGAGATTCAACCTCTCAACAGTGATCACCGATGAAGCATATGTGGGCTTCTCAGCGTCGATAGGCACAATGACCTCGCAACACTACGTGCTCGGCTGGAGCTTCGGTGTGGGCACGCAAGCTCCGGCCATTGACATGGACAAGCTTCCCAAGTTACCTGGCAGAAGAAGCAAGAAGTCTTATCCGCCCAAGACCATGGTGATAGCTCTACCAATAGTCTCGGTGGTGCTTGTGATTGTCGTTGCTGCTGGTGTTTTTCTACTGATTAAGAGGAAGTTTCAGAGATATGTCGAACTGCGTGAAGATTGGGAGCTTGAGTTTGGAGCACATAGACTGTCATACAAGGATTTGCTTCAGGCAACAGAACGGTTCAATAACAAGAACTTGCTTGGAATTGGAGGGTTCGGGAGGGTGTACAAAGGAGTGCTTCCTACTTCTAGTTCGGAGGTTGCTGTGAAGAGGGTATCACACGACTCAAGGCAAGGGATAAAGGAGTTTGTTGCTGAGGTAGCAAGCATTGGTCGCCTCCGGCACCGCAACCTCGTACAACTGCTTGGTTACTGTCGGCTCAAAGAAGAACTTCTTTTGGTCTACGACTATATGCCAAATGCACTAACCGGGAAGGCATCCCCTCTTACCGACGTGTTCGCCTTTGGCGCATTTCTCCTTGAGGTCACCAGTGGACGAAGGCCTGTCGAGCAAGACATCGAAGGGCATCGACTCCTGCTGACGGACTGGGTGTTTGAGAATTGCAGCAAGGAACAGATCCTTGCTGTTATTGACCCAAGACTTAACGGCAACATTAACATTAGTGAAGCAAGTTTAGTATTGAAGTTAGGGCTCTTGTGCTCGCACCCAATGTCTAATGTAAGGCCAACCATGCGACAAGTTGTGCAGTACCTCAACGGAGATATGCCCCTCCCAGAGATGTCACCAATGCGCTTTACTTTCAGCCTGTCAGCACTCATGCAGAACCAAGGGTTTGACTCGTTGTTGAAGAGTTTAGGCACGATTAGTAATCTTTCAATTGGGAGATGA
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| Protein seq | MQHMVKPVCILCLQCSLLYGVHLAAAVASAGDGNGGDQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLRFQESSSPEGGEKKAAVRSFSASFVFGIVTASPGVGGHGIALVITPTKDLSSGLASTYLGFLNRSSNGDNRNHIFAVELDTIQSPEFSDIDDNHVGIDINSLVSSNASDAGYYDDNTGEFKSLTLVSGKAMQVWVDYDDDATQIDVRLAPVGIKKPMKPLVSTRFNLSTVITDEAYVGFSASIGTMTSQHYVLGWSFGVGTQAPAIDMDKLPKLPGRRSKKSYPPKTMVIALPIVSVVLVIVVAAGVFLLIKRKFQRYVELREDWELEFGAHRLSYKDLLQATERFNNKNLLGIGGFGRVYKGVLPTSSSEVAVKRVSHDSRQGIKEFVAEVASIGRLRHRNLVQLLGYCRLKEELLLVYDYMPNALTGKASPLTDVFAFGAFLLEVTSGRRPVEQDIEGHRLLLTDWVFENCSKEQILAVIDPRLNGNINISEASLVLKLGLLCSHPMSNVRPTMRQVVQYLNGDMPLPEMSPMRFTFSLSALMQNQGFDSLLKSLGTISNLSIGR |
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| Function | L-type lectin-domain containing receptor kinase SIT1 [UniProtKB/Swiss-Prot:Q6H7D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0008440 | OsLiXu_Ung0008440.01 | ChrUN-Ctg68 | 32470 | 34820 | + | NAM | ||
| CDS seq | ATGCAGCACATGGTTAAGCCAGTTTGCATATTGTGTCTACAGTGTAGCCTCCTCTATGGCGTTCATCTTGCAGCAGCCGTTGCTTCTGCCGGTGACGGCAACGGCGGGGACCAGTTTGCCTACTCCGGCTTTGCCGGAGTGAAGGACCTCACCCTCGACGGCACGGCCATGGTCACACCGGATGGCCTACTCGAGCTGACCAATGGCAAGCCGCAGGTTAAAGGCCACGCATTCCATCCGACGCCGCTGCGCTTCCAGGAGTCGTCGTCACCAGAAGGCGGGGAGAAGAAGGCAGCAGTGCGGTCTTTCTCGGCGTCCTTTGTGTTCGGCATCGTCACTGCCTCCCCTGGTGTCGGCGGCCATGGCATCGCCCTCGTCATCACCCCAACCAAGGACCTCTCCTCCGGGCTCGCCAGCACATACCTGGGATTCCTCAACAGATCAAGCAACGGCGACAACAGAAATCACATCTTCGCGGTTGAGCTTGATACCATCCAGAGCCCCGAATTCTCCGACATCGACGACAACCACGTCGGCATCGACATCAATAGCCTTGTGTCTTCAAATGCCTCTGATGCCGGCTACTATGATGACAACACCGGTGAGTTCAAGAGTCTAACACTGGTTAGTGGGAAAGCCATGCAAGTATGGGTGGACTATGACGACGATGCTACACAGATTGACGTGAGGCTTGCTCCGGTAGGAATCAAGAAGCCCATGAAGCCATTGGTCTCTACGAGATTCAACCTCTCAACAGTGATCACCGATGAAGCATATGTGGGCTTCTCAGCGTCGATAGGCACAATGACCTCGCAACACTACGTGCTCGGCTGGAGCTTCGGTGTGGGCACGCAAGCTCCGGCCATTGACATGGACAAGCTTCCCAAGTTACCTGGCAGAAGAAGCAAGAAGTCTTATCCGCCCAAGACCATGGTGATAGCTCTACCAATAGTCTCGGTGGTGCTTGTGATTGTCGTTGCTGCTGGTGTTTTTCTACTGATTAAGAGGAAGTTTCAGAGATATGTCGAACTGCGTGAAGATTGGGAGCTTGAGTTTGGAGCACATAGACTGTCATACAAGGATTTGCTTCAGGCAACAGAACGGTTCAATAACAAGAACTTGCTTGGAATTGGAGGGTTCGGGAGGGTGTACAAAGGAGTGCTTCCTACTTCTAGTTCGGAGGTTGCTGTGAAGAGGGTATCACACGACTCAAGGCAAGGGATAAAGGAGTTTGTTGCTGAGGTAGCAAGCATTGGTCGCCTCCGGCACCGCAACCTCGTACAACTGCTTGGTTACTGTCGGCTCAAAGAAGAACTTCTTTTGGTCTACGACTATATGCCAAATGCACTAACCGGGAAGGCATCCCCTCTTACCGACGTGTTCGCCTTTGGCGCATTTCTCCTTGAGGTCACCAGTGGACGAAGGCCTGTCGAGCAAGACATCGAAGGGCATCGACTCCTGCTGACGGACTGGGTGTTTGAGAATTGCAGCAAGGAACAGATCCTTGCTGTTATTGACCCAAGACTTAACGGCAACATTAACATTAGTGAAGCAAGTTTAGTATTGAAGTTAGGGCTCTTGTGCTCGCACCCAATGTCTAATGTAAGGCCAACCATGCGACAAGTTGTGCAGTACCTCAACGGAGATATGCCCCTCCCAGAGATGTCACCAATGCGCTTTACTTTCAGCCTGTCAGCACTCATGCAGAACCAAGGGTTTGACTCGTTGTTGAAGAGTTTAGGCACGATTAGTAATCTTTCAATTGGGAGATGA
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| Protein seq | MQHMVKPVCILCLQCSLLYGVHLAAAVASAGDGNGGDQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLRFQESSSPEGGEKKAAVRSFSASFVFGIVTASPGVGGHGIALVITPTKDLSSGLASTYLGFLNRSSNGDNRNHIFAVELDTIQSPEFSDIDDNHVGIDINSLVSSNASDAGYYDDNTGEFKSLTLVSGKAMQVWVDYDDDATQIDVRLAPVGIKKPMKPLVSTRFNLSTVITDEAYVGFSASIGTMTSQHYVLGWSFGVGTQAPAIDMDKLPKLPGRRSKKSYPPKTMVIALPIVSVVLVIVVAAGVFLLIKRKFQRYVELREDWELEFGAHRLSYKDLLQATERFNNKNLLGIGGFGRVYKGVLPTSSSEVAVKRVSHDSRQGIKEFVAEVASIGRLRHRNLVQLLGYCRLKEELLLVYDYMPNALTGKASPLTDVFAFGAFLLEVTSGRRPVEQDIEGHRLLLTDWVFENCSKEQILAVIDPRLNGNINISEASLVLKLGLLCSHPMSNVRPTMRQVVQYLNGDMPLPEMSPMRFTFSLSALMQNQGFDSLLKSLGTISNLSIGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.222723 | 0.0 | 0.111266 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19550 | SBH | 0.945660 | 0.704545 | 0.067253 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013330 | SBH | 0.403938 | 1.268308 | 0.821603 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013520 | SBH | 0.000000 | 0.0 | 0.756847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013350 | SBH | 0.454340 | 0.000000 | 1.227564 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013190 | SBH | 0.311569 | 0.020532 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013150 | SBH | 1.113182 | 2.203167 | 2.857940 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0181500 | SBH | 0.9506765 | 0.764169 | 0.7915025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012950 | SBH | 0.190326 | 0.000000 | 0.281300 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0194100 | SBH | 0.6890615 | 0.908194 | 2.4310385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013510 | SBH | 0.0 | 0.042182 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013050 | SBH | 0.453327 | 1.750241 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013570 | SBH | 2.881535 | 6.002110 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013400 | RBH | 0.000000 | 0.000000 | 0.129842 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013200 | SBH | 0.097413 | 0.768453 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013540 | SBH | 0.335401 | 0.750497 | 0.428193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013310 | SBH | 0.287123 | 0.000000 | 0.591033 |
