Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0007920 | OGI:99018490 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg63:36848-37346 | ||||||||
| Gene Symbol | DEFL4, OsDEFL4, OsDf-04, Df-04 | ||||||||||
| DNA seq | ATGGAGGCCAAGGTTGTAGCCACTGTGTTAATCGTTCTCTTCCTCACCCTTGGTGAGTTCACTATCTGCTACACAATAATGCCTTGCCATTATCACTGCCAATTCACAATTAGCATGACAACAAACTATTAATTCTACAGTGACTAAGCAGGCAGTGATACTGCTGAGCATCATCATCGATTATCAGATCATACATAAGTACTAATTACCTTGTACTATTCCTAATCAAGTATTGATTGATTTGTTTCATGATTTGTGATGAGCAGGTGGTGAGGCAGCTGCCAAGATATGCCATGATCATAGCCAAACCTTCAAAGGGATGTGCTTCCATACCTCCAACTGCATCGCCTGCTGCACCAACGAGGGATACACCGGCGGCTACTGCAAACCATTTACATATAGATGCATGTGCACTAAAGATTGTGGAGGGGACAGTCCACCTGATGATCCACCACCGGCGATGCCGACATCGCCGGCGGCGACGACGACGGTGGCCTGA
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| CDS seq | ATGGAGGCCAAGGTTGTAGCCACTGTGTTAATCGTTCTCTTCCTCACCCTTGGTGGTGAGGCAGCTGCCAAGATATGCCATGATCATAGCCAAACCTTCAAAGGGATGTGCTTCCATACCTCCAACTGCATCGCCTGCTGCACCAACGAGGGATACACCGGCGGCTACTGCAAACCATTTACATATAGATGCATGTGCACTAAAGATTGTGGAGGGGACAGTCCACCTGATGATCCACCACCGGCGATGCCGACATCGCCGGCGGCGACGACGACGGTGGCCTGA |
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| Protein seq | MEAKVVATVLIVLFLTLGGEAAAKICHDHSQTFKGMCFHTSNCIACCTNEGYTGGYCKPFTYRCMCTKDCGGDSPPDDPPPAMPTSPAATTTVA |
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| Function | Defensin J1-2 [UniProtKB/Swiss-Prot:O65740] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0007920 | OsLiXu_Ung0007920.01 | ChrUN-Ctg63 | 36848 | 37346 | + | NAM | ||
| CDS seq | ATGGAGGCCAAGGTTGTAGCCACTGTGTTAATCGTTCTCTTCCTCACCCTTGGTGGTGAGGCAGCTGCCAAGATATGCCATGATCATAGCCAAACCTTCAAAGGGATGTGCTTCCATACCTCCAACTGCATCGCCTGCTGCACCAACGAGGGATACACCGGCGGCTACTGCAAACCATTTACATATAGATGCATGTGCACTAAAGATTGTGGAGGGGACAGTCCACCTGATGATCCACCACCGGCGATGCCGACATCGCCGGCGGCGACGACGACGGTGGCCTGA
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| Protein seq | MEAKVVATVLIVLFLTLGGEAAAKICHDHSQTFKGMCFHTSNCIACCTNEGYTGGYCKPFTYRCMCTKDCGGDSPPDDPPPAMPTSPAATTTVA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0172300 | SBH | 0.0 | 0.0 | 12.292075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07624 | SBH | 0.0 | 0.0 | 3.164219 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0172300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005550 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005670 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005480 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005400 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005430 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0068100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0070200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005810 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005380 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005560 | SBH | 0.0 | 0.0 | 4.834088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005530 | SBH | 0.0 | 0.0 | 0.0 |
