Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0007550 | OGI:99017950 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg62:2713-6304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTCAGCACCTGGAGAGGCCGGGCTGGGGTGGAAGACGGCAGCTCATGTATCTCTTCCTTGAGGAGGTTGAAGCTGATGTCAAGGACGGTGATGCTGCTGGATGCCATCAACTCCAGCGGCAAGCCACCGGACAGCGAGTTGTGGGACAGGTTGAGGCGCAGCAGGCCGGTGAGGTTGCCAAGGGACGGTGAGATACGCCCCTCGAGGCCCTTGGAAGCCAGTGAGACATCGGTGACCGTCCCATCTGCACTGCAGGTGACCCCTTCCCATTTGCAGCAGTCTGCGGCATTCCACCATGACACTGCGAGACCGCCATCGCTGGAGAGGCTGGAGAGGAACTGGAGGAGGGAGCTCCTCTCCTGCTCTGTGCATGAGCTGGTGGGAGAGGCCAGAGAGAGCAATAGCAGCAGCGCAAAGGCAAGATTGAACCTAAGGAAATCTATGAAACATCTATTGCTGCACTTCTTGCATGAGGAATGGAGTTGCTGCTGCTTCTGCATGGCCTCCAAGCAAATGGTGCCTACACCTGATTCTGATCCGAGGTGCAAATGAAATGGACCTGATGATGCTTTGAGGAAGAGGAGGAAAAAGAAAACAAAGCAAGCTGCTTATGTTGCAGTCGTATTCACAATATAGAAAGGAGGATTGGGTCAAGAATAAGGTGTAGTGGCCACACATCCACACTGTTGATGATGTGCACAATTGCCAGTAAGCCACTGCAGGTGCAGCTTCCTGGTTCACACCAGATACCAGCACGTTTCGGTTGGAGCCACCTGCCAAGTGCCCAACCTTTTTGTACAAAAAATTTGTTGTCTGCTTTTGCAATTTGCATCCTCCCTCGATTATGTGATTGTTCAATTGGTATTAAACAATTGTTTTGGTTTACATGATGATATGAGATGATATTATATAATATGACATGTGTTCTGTTCACCAACTTTACAATGACATCTTTTCAGATACTGCAGTATGAAGTGGTAATTGTTTGTGCTACTGTTGTCAGTGTTGGTCATTCCCACTCACTTGGTTCTCTGTGGCCTCTGCTCCACTTATAAATTATTAAAATTGGCTAATTGATTCGCTGTCTCTGTCTGTTCTTTTTTATCCCAGAACAAATCGGCTGTTTGCTAAAATTTAAATTTTACAACTTAACTTTAGAGTAAATCTTAGGTTATTTTTAACGTAGTTTTTTTTTCAACATTAACTTTTAAGTCGGTAAGGATACATATATAAAATTTTTTATTCACATTACTTGTTAGTCGCTAATAAGTCGTTTGGTATTTAAGTAGTTCTTGGTCAACCGATGGGTCATTATGGATTGTGTAAGTTGATTATAATCATGTCATTTAGAGACGCCAAAGCTATAGCTAGTCTTTTTTCCACGCAAAAAAGGGGGTACATCTAGTTTTTGACCAATCATTTATCAACGATTTCATCCTGCGTCTGGAGAGCTCTTGTCCTATATGTACAAGAATTGTTAGTCAGAGAGATAACTCTAGAAGTTCAGATTGCTGTGTTTCAACAAAAATGTTCAGAATTTCAGATTGCCAAGTCATGATAACATGTGGCCACGGAAATGGTTCGACAATTGCTGCAGTACAGTCAAATTGCTATACATGATTTTTTTTTGAATGAAAATTGCTATACATGAGTAGATATGCATTATGGGACTATGCCACTGAAAGTCTGAAATAGTTCATGTAAACATCCAAAATTTTTAGATTGGGCAATTTGGAGAAGCTGGCCTTGGCTCATCTCCGCTGAAATGACAAACACCACAGTTAAAATTATGCAATGGATGGGTTAATTGACTCAACGATTACTCCCACCGTTTCAGTAAGAATGTAGGATGTTTTGATTTTGTTTTAAATTAAACTTATTTAAATTTAACTAAGTTTATAAAAGAATAAACCCAAACAATTACTATCTCCATTTCATATTATAAGTCGTTTTGATATTTTCCTCATCAAAGTTTGACCAAGATTATAAAAAATATATGGCTGTATTTTCAACACAAAATAAATATATTATCAAAATATTCAATGTTATATTTAATAAAACTAATTTGAATTATAGATATTTTTAAATTTGTCTATAAACTTGATCAAACATAAAGAAATTTAACAAAAAGAAGTTAAAACGACTTATAACATGAAATGGAGCAAGTATACCATAAAAATGTATTCAAGGTTAATACAATTAATTTGGCATTCTAGATATTACTATATTTTTTATATAAACTTAATTAAATTTTAAAAACAAATTTACTTGGGACAAAAACCAAAATAGAGTGAGTAGATTAATACGGAGCAATCAATTGTCACGCACGACGCACCCTAAGCCCCACTATTTTGACCGTCCGATCGACCGTGTACGGTTTGGATCAAACGATCGATGGAGATTCATAGGAATTTTACGTGGAAACCCTCAAAGTTATCTCCATTACTATTTCTGTCCTTCTTTTTATGCACTTCCCAAGTTGGGCCGGAATACATGGGCCTCCAGTAGTAGAGGTAGTCGTTTCCATTTGGGCCCAACACGAGAGAATCTTTTCGTTCTTCTCACAGACTAGCGGCGGCCGGCGGGGAAGGTCACCGCGGTCGCCGGTGGCGATGGCGACGGCGGCGGCGGCGGCGGGATTGCTCCTTCCGGACCGCTGCCGCGCGCCCGCGATGCCCTTGCGCTGTTCTACGGCAATGCCAGGGCTGCCCTGGTGGGAGGGGTGGCGCTTCCCTTCCCTGTGAGGTGGCGCACTCAGGGTGTTCGGCGAAATGCTCCAGTGACTTGTACCGGGCGGCGGCGAGCGTGGCCGTCGAGGAGCTCGCGGGGACGGGCATATATGTCAGGCGCCGGATGGGGTGACACCGCAGTGAGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCACGGGTCCGCCGCCTTCGAGATGGTTAATTGTTTTGCATTCTCTTACAGCTCCATACTTCCATAGTCCATACTAGTAGCCTAGCATTTGTGCTGGTATTTTATCCACGCATTTCGTAGTCAACTGTTGTCGTATCTACACAGCTGAAAATACCTAATACCTTCACTTGAATGGGAACCATTTTGATTTTCGAATTGAAAAACTCAAGGAACATAACAATTTCCTCACTTGTTTTGACCTTTTGTCATGCCTGTGCAACCTGAGCATGAACAGTGTTTAATAAACTGGGAAAGGAAGACACGTTACATATCCACTTTGTAATACAAAAAAACAAGTAAATAGCAATGCCTCAAAACGACACTAGTCTGTAACAAGCTGTACAGGACGAATGGCAAGACAAATCAGAAATACTAGTTCTAGTGAAACTAGATCAACTCTTACATGGAAAGTGCAAGAATCTCTAACATATACTCTAACAAGAAATACTAGTTCTAGGGAAACTAGATGAACTTAGTTCACAGAAGGCACACGATTATCTATCATATTTTTTTAGATAATCTATCATATTATTGCATCTTTAGGTCAGGGTCTATACTGTCCAGACTGGTTACTACTTCCATCATAGTTGGCCTCATCAAAGGATTACCATCGACGCACTTGCAAGCAGTTTCAAGGACCTTTAG
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| CDS seq | ATGTTCAGCACCTGGAGAGGCCGGGCTGGGGTGGAAGACGGCAGCTCATGTATCTCTTCCTTGAGGAGGTTGAAGCTGATGTCAAGGACGGTGATGCTGCTGGATGCCATCAACTCCAGCGGCAAGCCACCGGACAGCGAGTTGTGGGACAGGTTGAGGCGCAGCAGGCCGGTGAGGTTGCCAAGGGACGGTGAGATACGCCCCTCGAGGCCCTTGGAAGCCAGTGAGACATCGGTGACCGTCCCATCTGCACTGCAGGTGACCCCTTCCCATTTGCAGCAGTCTGCGGCATTCCACCATGACACTGCGAGACCGCCATCGCTGGAGAGGCTGGAGAGGAACTGGAGGAGGGAGCTCCTCTCCTGCTCTGTGCATGAGCTGGTGGGAGAGGCCAGAGAGAGCAATAGCAGCAGCGCAAAGGCAAGATTGAACCTAAGGAAATCTATGAAACATCTATTGCTGCACTTCTTGCATGAGGAATGGAGTTGCTGCTGCTTCTGCATGGCCTCCAAGCAAATGCGGCGGCCGGCGGGGAAGGTCACCGCGGTCGCCGGTGGCGATGGCGACGGCGGCGGCGGCGGCGGGATTGCTCCTTCCGGACCGCTGCCGCGCGCCCGCGATGCCCTTGCGCTGTTCTACGGCAATGCCAGGGCTGCCCTGGTGGGAGGGGTGGCGCTTCCCTTCCCTGTGAGGTGGCGCACTCAGGGTGTTCGGCGAAATGCTCCAGTGACTTGTACCGGGCGGCGGCGAGCGTGGCCGTCGAGGAGCTCGCGGGGACGGGCATATATGTCAGGCGCCGGATGGGGTGACACCGCAGTGAGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCACGGGTCAGGGTCTATACTGTCCAGACTGGTTACTACTTCCATCATAGTTGGCCTCATCAAAGGATTACCATCGACGCACTTGCAAGCAGTTTCAAGGACCTTTAG
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| Protein seq | MFSTWRGRAGVEDGSSCISSLRRLKLMSRTVMLLDAINSSGKPPDSELWDRLRRSRPVRLPRDGEIRPSRPLEASETSVTVPSALQVTPSHLQQSAAFHHDTARPPSLERLERNWRRELLSCSVHELVGEARESNSSSAKARLNLRKSMKHLLLHFLHEEWSCCCFCMASKQMRRPAGKVTAVAGGDGDGGGGGGIAPSGPLPRARDALALFYGNARAALVGGVALPFPVRWRTQGVRRNAPVTCTGRRRAWPSRSSRGRAYMSGAGWGDTAVSAFRNATLSSRARVRVYTVQTGYYFHHSWPHQRITIDALASSFKDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0007550 | OsLiXu_Ung0007550.01 | ChrUN-Ctg62 | 2713 | 6304 | + | NAM | ||
| CDS seq | ATGTTCAGCACCTGGAGAGGCCGGGCTGGGGTGGAAGACGGCAGCTCATGTATCTCTTCCTTGAGGAGGTTGAAGCTGATGTCAAGGACGGTGATGCTGCTGGATGCCATCAACTCCAGCGGCAAGCCACCGGACAGCGAGTTGTGGGACAGGTTGAGGCGCAGCAGGCCGGTGAGGTTGCCAAGGGACGGTGAGATACGCCCCTCGAGGCCCTTGGAAGCCAGTGAGACATCGGTGACCGTCCCATCTGCACTGCAGGTGACCCCTTCCCATTTGCAGCAGTCTGCGGCATTCCACCATGACACTGCGAGACCGCCATCGCTGGAGAGGCTGGAGAGGAACTGGAGGAGGGAGCTCCTCTCCTGCTCTGTGCATGAGCTGGTGGGAGAGGCCAGAGAGAGCAATAGCAGCAGCGCAAAGGCAAGATTGAACCTAAGGAAATCTATGAAACATCTATTGCTGCACTTCTTGCATGAGGAATGGAGTTGCTGCTGCTTCTGCATGGCCTCCAAGCAAATGCGGCGGCCGGCGGGGAAGGTCACCGCGGTCGCCGGTGGCGATGGCGACGGCGGCGGCGGCGGCGGGATTGCTCCTTCCGGACCGCTGCCGCGCGCCCGCGATGCCCTTGCGCTGTTCTACGGCAATGCCAGGGCTGCCCTGGTGGGAGGGGTGGCGCTTCCCTTCCCTGTGAGGTGGCGCACTCAGGGTGTTCGGCGAAATGCTCCAGTGACTTGTACCGGGCGGCGGCGAGCGTGGCCGTCGAGGAGCTCGCGGGGACGGGCATATATGTCAGGCGCCGGATGGGGTGACACCGCAGTGAGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCACGGGTCAGGGTCTATACTGTCCAGACTGGTTACTACTTCCATCATAGTTGGCCTCATCAAAGGATTACCATCGACGCACTTGCAAGCAGTTTCAAGGACCTTTAG
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| Protein seq | MFSTWRGRAGVEDGSSCISSLRRLKLMSRTVMLLDAINSSGKPPDSELWDRLRRSRPVRLPRDGEIRPSRPLEASETSVTVPSALQVTPSHLQQSAAFHHDTARPPSLERLERNWRRELLSCSVHELVGEARESNSSSAKARLNLRKSMKHLLLHFLHEEWSCCCFCMASKQMRRPAGKVTAVAGGDGDGGGGGGIAPSGPLPRARDALALFYGNARAALVGGVALPFPVRWRTQGVRRNAPVTCTGRRRAWPSRSSRGRAYMSGAGWGDTAVSAFRNATLSSRARVRVYTVQTGYYFHHSWPHQRITIDALASSFKDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.381468 | 0.0 | 0.117639 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0153300 | SBH | 0.849591 | 0.112629 | 1.217784 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0153300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004111 | SBH | 0.101891 | 1.419222 | 2.715559 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004240 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004180 | SBH | 0.686838 | 18.709644 | 3.358234 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003990 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004111 | SBH | 6.864206 | 0.000000 | 8.524063 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004040 | SBH | 0.261415 | 0.506108 | 0.876083 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0051900 | SBH | 2.271668 | 9.3980925 | 14.4844895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004200 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004001 | SBH | 0.534039 | 6.280169 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004280 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004231 | SBH | 0.659599 | 0.284526 | 0.061105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004270 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004081 | SBH | 0.488124 | 1.661150 | 0.094675 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004300 | SBH | 0.000000 | 0.000000 | 0.000000 |
