Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0002680 | OGI:99008900 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg38:108702-110040 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTTCCCAGCTCGGCCTAAGACATCGATTAAGCATCCGTAATGCACCACAGTAGGGGAAATATTATATGCCTCTGTCATGCTGAGGAAGAACTCTCGGCCTTTGTCAACCAAGCCAGCATGAGTGCAGGCAGTGAGAACACCAACGAAGGTCACCTCATCTGGAGTTTGTAAAGCCCTGAGCATTCTATAGAACATGTCAATAGCCTCCTCCCCACGGCCATTCACTGCGAGACCAAGTATAATGGCAGTCCAGGTAAACTTATCTCTGTTGTGCATATCTTTGAATACATCCAATGCGCGCTCAATGCTCCCACACTTTGAGTACATGTCTATGAGTGCATTCCCGACAAAAACATCCATCTTGATCCCAAGTCTTCCCATGTAAATCCTTGCCCATTCCCCTGTCTCCAGAGCACCTAGCTGGGCACAGGCAGTGACCACACTGACCATGGTGAACTCATCTGCTCTCACCTTGCAAATCTGCATGTAACGGAATGTCTCCAATGCGTCCCTGAACCTGCCAACCTGTACATAGCCATCGATCATCGCGGTCCATGCGATGGTGTCTCTTTCAGGCATATGATCAAACAGGTCCCTGGCACGATCAACCTGGCCTGACCTCACAAGGCCAGAAATTACCGACGTCCAGGACGCCATGCTCCTCATCTGCATGCCCTCGAACAACACCCAGGCCGCGTCCATGTCGCCGCACTCGGCGTACATATCAACCAGAGCGTTCTCCACCCTCTGATCAGGCAACACCCCGCTCTCGAGGACGCGCTTGTGCACCTGCATCCCCAGCAGCAGGTCCTTCCCTTTCCCGCAAGCCGAGAGCACCGAGACGTAGGTGACCGCGGTGGTCATGGCGCCGGCTCTGACCATGTCCACGAAGGAGCAGCAGGACAGCTCGAACCGCCCGCTCCTGTTATGGCCAGAGATGAGCGCGTTCCACATGACCGGCGCTCCCCCTCCCGTGGCGAGGCACGCCGCCTCCAGCACCGCGCGCGCCGCGGCGCCGTCTCCCCTGGCCGCGTACATGACGATCAGGGAGCTCGCCGCGTGAGCGTTCGACTCCATCCCGAACTTAACCACGTGCGCGTGGATGGCACCGCCAACTGATGCCGCCGCCGCGGCCGCGCCCCGCGCCGCCGCCGCCGCCTTGAGCAAGGACGGGAACGTGTACGCGTCGGGCCTGGCCCCGCCAGCCAGCATGCGGACGTATCCCGCAACAGCCTCCTCCGCGCCATGGCCGGACACGGACGAACTCGCAGCACGCCCCCGCCGGTGGGGAATTCCGTCGAGCAGGCTGCGGGCACGTGACAGGGCGCGGACCAT
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| CDS seq | ATGGTCCGCGCCCTGTCACGTGCCCGCAGCCTGCTCGACGGAATTCCCCACCGGCGGGGGCGTGCTGCGAGTTCGTCCGTGTCCGGCCATGGCGCGGAGGAGGCTGTTGCGGGATACGTCCGCATGCTGGCTGGCGGGGCCAGGCCCGACGCGTACACGTTCCCGTCCTTGCTCAAGGCGGCGGCGGCGGCGCGGGGCGCGGCCGCGGCGGCGGCATCAGTTGGCGGTGCCATCCACGCGCACGTGGTTAAGTTCGGGATGGAGTCGAACGCTCACGCGGCGAGCTCCCTGATCGTCATGTACGCGGCCAGGGGAGACGGCGCCGCGGCGCGCGCGGTGCTGGAGGCGGCGTGCCTCGCCACGGGAGGGGGAGCGCCGGTCATGTGGAACGCGCTCATCTCTGGCCATAACAGGAGCGGGCGGTTCGAGCTGTCCTGCTGCTCCTTCGTGGACATGGTCAGAGCCGGCGCCATGACCACCGCGGTCACCTACGTCTCGGTGCTCTCGGCTTGCGGGAAAGGGAAGGACCTGCTGCTGGGGATGCAGGTGCACAAGCGCGTCCTCGAGAGCGGGGTGTTGCCTGATCAGAGGGTGGAGAACGCTCTGGTTGATATGTACGCCGAGTGCGGCGACATGGACGCGGCCTGGGTGTTGTTCGAGGGCATGCAGATGAGGAGCATGGCGTCCTGGACGTCGGTAATTTCTGGCCTTGTGAGGTCAGGCCAGGTTGATCGTGCCAGGGACCTGTTTGATCATATGCCTGAAAGAGACACCATCGCATGGACCGCGATGATCGATGGCTATGTACAGGTTGGCAGGTTCAGGGACGCATTGGAGACATTCCGTTACATGCAGATTTGCAAGGTGAGAGCAGATGAGTTCACCATGGTCAGTGTGGTCACTGCCTGTGCCCAGCTAGGTGCTCTGGAGACAGGGGAATGGGCAAGGATTTACATGGGAAGACTTGGGATCAAGATGGATGTTTTTGTCGGGAATGCACTCATAGACATGTACTCAAAGTGTGGGAGCATTGAGCGCGCATTGGATGTATTCAAAGATATGCACAACAGAGATAAGTTTACCTGGACTGCCATTATACTTGGTCTCGCAGTGAATGGCCGTGGGGAGGAGGCTATTGACATGTTCTATAGAATGCTCAGGGCTTTACAAACTCCAGATGAGGTGACCTTCGTTGGTGTTCTCACTGCCTGCACTCATGCTGGCTTGGTTGACAAAGGCCGAGAGTTCTTCCTCAGCATGACAGAGGCATATAATATTTCCCCTACTGTGGCCGAGCTGGGAAATTAA
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| Protein seq | MVRALSRARSLLDGIPHRRGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAAAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRAGAMTTAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVAELGN |
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| Function | Putative pentatricopeptide repeat-containing protein At3g15930 [UniProtKB/Swiss-Prot:Q9LSB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0002680 | OsLiXu_Ung0002680.01 | ChrUN-Ctg38 | 108702 | 110040 | - | NAM | ||
| CDS seq | ATGGTCCGCGCCCTGTCACGTGCCCGCAGCCTGCTCGACGGAATTCCCCACCGGCGGGGGCGTGCTGCGAGTTCGTCCGTGTCCGGCCATGGCGCGGAGGAGGCTGTTGCGGGATACGTCCGCATGCTGGCTGGCGGGGCCAGGCCCGACGCGTACACGTTCCCGTCCTTGCTCAAGGCGGCGGCGGCGGCGCGGGGCGCGGCCGCGGCGGCGGCATCAGTTGGCGGTGCCATCCACGCGCACGTGGTTAAGTTCGGGATGGAGTCGAACGCTCACGCGGCGAGCTCCCTGATCGTCATGTACGCGGCCAGGGGAGACGGCGCCGCGGCGCGCGCGGTGCTGGAGGCGGCGTGCCTCGCCACGGGAGGGGGAGCGCCGGTCATGTGGAACGCGCTCATCTCTGGCCATAACAGGAGCGGGCGGTTCGAGCTGTCCTGCTGCTCCTTCGTGGACATGGTCAGAGCCGGCGCCATGACCACCGCGGTCACCTACGTCTCGGTGCTCTCGGCTTGCGGGAAAGGGAAGGACCTGCTGCTGGGGATGCAGGTGCACAAGCGCGTCCTCGAGAGCGGGGTGTTGCCTGATCAGAGGGTGGAGAACGCTCTGGTTGATATGTACGCCGAGTGCGGCGACATGGACGCGGCCTGGGTGTTGTTCGAGGGCATGCAGATGAGGAGCATGGCGTCCTGGACGTCGGTAATTTCTGGCCTTGTGAGGTCAGGCCAGGTTGATCGTGCCAGGGACCTGTTTGATCATATGCCTGAAAGAGACACCATCGCATGGACCGCGATGATCGATGGCTATGTACAGGTTGGCAGGTTCAGGGACGCATTGGAGACATTCCGTTACATGCAGATTTGCAAGGTGAGAGCAGATGAGTTCACCATGGTCAGTGTGGTCACTGCCTGTGCCCAGCTAGGTGCTCTGGAGACAGGGGAATGGGCAAGGATTTACATGGGAAGACTTGGGATCAAGATGGATGTTTTTGTCGGGAATGCACTCATAGACATGTACTCAAAGTGTGGGAGCATTGAGCGCGCATTGGATGTATTCAAAGATATGCACAACAGAGATAAGTTTACCTGGACTGCCATTATACTTGGTCTCGCAGTGAATGGCCGTGGGGAGGAGGCTATTGACATGTTCTATAGAATGCTCAGGGCTTTACAAACTCCAGATGAGGTGACCTTCGTTGGTGTTCTCACTGCCTGCACTCATGCTGGCTTGGTTGACAAAGGCCGAGAGTTCTTCCTCAGCATGACAGAGGCATATAATATTTCCCCTACTGTGGCCGAGCTGGGAAATTAA
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| Protein seq | MVRALSRARSLLDGIPHRRGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAAAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRAGAMTTAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVAELGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0176300 | SBH | 0.176662 | 0.340616 | 0.470114 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08120 | SBH | 0.151039 | 0.283550 | 0.152997 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0176300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005590 | SBH | 0.0 | 2.006220 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005280 | SBH | 0.0 | 0.0 | 0.419709 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005530 | SBH | 0.0 | 0.0 | 0.506191 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005180 | SBH | 0.0 | 0.045097 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005400 | SBH | 0.000000 | 0.0 | 1.296739 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0069700 | SBH | 0.7899945 | 1.4137165 | 0.7586015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005350 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0070000 | SBH | 0.6714115 | 1.651619 | 3.563659 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005160 | SBH | 0.063337 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005350 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005410 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005350 | RBH | 0.057339 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005380 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005260 | SBH | 0.363339 | 0.0 | 0.0 |
