Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0020900 | OGI:12067810 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:25577097-25580354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggagaggcagcgagatgcatggccaatgtttgttcatcatcgttttcctcatccattctgtccatgtcctccccgggtgcatagctcagtctagtgatgagcaaacactgcttgcattcaaggccgccatctccggtgacccaaacggggttcttgatacatgggtcactacCAaGggaagcatgaatgccacagacagcatctgccggtggcgcggTgtgtcgtgccgatccaggcagcaccctggtcgtgtgacagcgctggagctcatgtcatccaacttgatgggtgtgataagcccaagtctgtccaatctttccttcctccacacactcaacctctctggcaaccgtctcactggtggcatcccgttggagcttggccagctacctcgcatacgggtcatcagccttggtgggaattctctgatcggtaacatacctgtgtctctcaccaattgtgctcgactcacacatctcgagttaccacggaatggattgcatggtgagattccagcgaacttcagcaactgcagggaactccgggtgttcaatatcagtgcgaacagcctgtctggtggcatccccgcatcattcgggtcactgtcgaagcttgagttcttgggcctgcatcggagcaacctcatcggcggcatcccaccatcattgggtaacatgtcctcactgttagcttttgatgccagtgagaattccaaccttggaggtagcatacctgacactctgggtagactcacaaagctgaactttctgaggttagcttttgctggtcttggaggggcaattccattctcgttgtataacatttcatcccttactgtacttgacttgggaaacaatgatctgtctggtatgctgccgcctgacttcggcatcaccctcccgagaatccagtttcttaatctgtacaactgtcggctccaaggaagcatcccaccatcgataggaaatgcgacgaaactccgtcggatccagcttcagagcaacggtctgcAgggaattgtgccacctgacattggtaggctgaaggatctcgataagctgaaccttcagttcaaccagttggaggacaagtGggacaaggactggccactgatggctgccttagggaattgcagtaggctttttgcactgagcctctcaagcaataagtttgaaggtgatctgccggcttctcttgtcaacctcacaattggaatagagaaaatcttTAtgaatgaaaacaggataagcggtgccattccctcggagattggcaagttcagaaatcttgatgttcttgctcttgctgacaatgcactgacgggcaccataccagacacaattggtggtctcagcagcatgaccgggctagatgtctcaggcaataacatatccggtgaaatcccgCcaatgctggttgcaaacctttctaagctcgctttcctggacctatcagagaatgacatggagggaagcatacctctgagctttgagagaatgagcagtattgcaatcctggacttgtcttacaatcagttcagtggcatgttaccgaaacaagttctgagcctctcgtctctaaccttgttcctgaacttgtctcacaacactttctcaggtccaattccttcagaagttggcagattaagcagccttggggttctcgacttgtcaaacaataggctgtctggagagataccacaggcgctagctgggtgtcaatcgatggagtacttgtttctgcaaggaaaccaatttggtggcagaattccccaatctcttgtatctctgaaagggcttcaacaccttgacatgtcacagaataacttgtctggtccaattccagatttccttgcaacttttcagtacttgcgatacttaaacttgtcctacaaccagcttgatggaccggtgccaacaactggagtgttcaatgctacgaaagacttctttGttggtggtaacagagtttgtggtggtgtttcagagttgcagctaccgaaatgtcctgatcgcgctggtaagggctcacatagatcaagaactgtgctgattgtgtcagtttctgttggatctttcgtggctctagtcctcatcgcaggcgccctttttgtatgtgttctgaagccaatgaaacaggttatgcagagtaatgagacatctcctcgaccattattgatggagcaacactggaaattatcctatgcagaactacatagggctactgacgggttctctgcagctaacctgattggtgttggaagctttggctcagtgtacaaaggagttgtaggctctgaagaggaggaagtcgcaataaaagtcctgaatcttctgcagcatggagccgagcggagtttcttggctgagtgtgaggcgctaagaagtgttcggcatcgcaatcttgtaaagatcatcacagcctgttcgaccgtggatcactatggtaatgatttcaaagctttggtgtatgagttcatgcctaacagggacctggacaaatggctccatccgaccattgatgatgatgatgagagtttctcacgggtgttaaccatgtctgaaagactgaggattgcgctggatgttgctgaagctctcgattacctgcaccgccatggccaagtgcccattgttcactgtgatctgaagccaagcaatgtccttcttgacaatgacatggtcgcccatgtaggggactttgggctgtcacggtttgtgctgggaacaaacaacaattccatacagtattctagtatttcagctgggatcaaaggcactgtcggatatattcctccaggtaattaggactctgaattctaaatactaccacatctacatgacaaacatttcatgaaatacctgaataataacgcattgacgattttatttctgttaatgttttcagaatatggaatgggtggtgaaatttcagtggagggggatgtctacagttacggaatcctgctgcttgagatgttcactgcaaagaggccaacagatgatttgtttcagggaagtagaagcatccgcagctatgttgcaacggcttatcctgacagggccatggagattgttgatcaagcaatgttgcagcttaaagagaaagatatgtttgaaaagaagaccgaaggatgtataatgtcagttctcagagtggcgctgcaatgtacagaggactccccgagagcaaggatgctcacaggatatgtcatcagagagctaatttctgtgaggaaTacttatgaaggttag
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| CDS seq | atggggagaggcagcgagatgcatggccaatgtttgttcatcatcgttttcctcatccattctgtccatgtcctccccgggtgcatagctcagtctagtgatgagcaaacactgcttgcattcaaggccgccatctccggtgacccaaacggggttcttgatacatgggtcactacCAaGggaagcatgaatgccacagacagcatctgccggtggcgcggTgtgtcgtgccgatccaggcagcaccctggtcgtgtgacagcgctggagctcatgtcatccaacttgatgggtgtgataagcccaagtctgtccaatctttccttcctccacacactcaacctctctggcaaccgtctcactggtggcatcccgttggagcttggccagctacctcgcatacgggtcatcagccttggtgggaattctctgatcggtaacatacctgtgtctctcaccaattgtgctcgactcacacatctcgagttaccacggaatggattgcatggtgagattccagcgaacttcagcaactgcagggaactccgggtgttcaatatcagtgcgaacagcctgtctggtggcatccccgcatcattcgggtcactgtcgaagcttgagttcttgggcctgcatcggagcaacctcatcggcggcatcccaccatcattgggtaacatgtcctcactgttagcttttgatgccagtgagaattccaaccttggaggtagcatacctgacactctgggtagactcacaaagctgaactttctgaggttagcttttgctggtcttggaggggcaattccattctcgttgtataacatttcatcccttactgtacttgacttgggaaacaatgatctgtctggtatgctgccgcctgacttcggcatcaccctcccgagaatccagtttcttaatctgtacaactgtcggctccaaggaagcatcccaccatcgataggaaatgcgacgaaactccgtcggatccagcttcagagcaacggtctgcAgggaattgtgccacctgacattggtaggctgaaggatctcgataagctgaaccttcagttcaaccagttggaggacaagtGggacaaggactggccactgatggctgccttagggaattgcagtaggctttttgcactgagcctctcaagcaataagtttgaaggtgatctgccggcttctcttgtcaacctcacaattggaatagagaaaatcttTAtgaatgaaaacaggataagcggtgccattccctcggagattggcaagttcagaaatcttgatgttcttgctcttgctgacaatgcactgacgggcaccataccagacacaattggtggtctcagcagcatgaccgggctagatgtctcaggcaataacatatccggtgaaatcccgCcaatgctggttgcaaacctttctaagctcgctttcctggacctatcagagaatgacatggagggaagcatacctctgagctttgagagaatgagcagtattgcaatcctggacttgtcttacaatcagttcagtggcatgttaccgaaacaagttctgagcctctcgtctctaaccttgttcctgaacttgtctcacaacactttctcaggtccaattccttcagaagttggcagattaagcagccttggggttctcgacttgtcaaacaataggctgtctggagagataccacaggcgctagctgggtgtcaatcgatggagtacttgtttctgcaaggaaaccaatttggtggcagaattccccaatctcttgtatctctgaaagggcttcaacaccttgacatgtcacagaataacttgtctggtccaattccagatttccttgcaacttttcagtacttgcgatacttaaacttgtcctacaaccagcttgatggaccggtgccaacaactggagtgttcaatgctacgaaagacttctttGttggtggtaacagagtttgtggtggtgtttcagagttgcagctaccgaaatgtcctgatcgcgctggtaagggctcacatagatcaagaactgtgctgattgtgtcagtttctgttggatctttcgtggctctagtcctcatcgcaggcgccctttttgtatgtgttctgaagccaatgaaacaggttatgcagagtaatgagacatctcctcgaccattattgatggagcaacactggaaattatcctatgcagaactacatagggctactgacgggttctctgcagctaacctgattggtgttggaagctttggctcagtgtacaaaggagttgtaggctctgaagaggaggaagtcgcaataaaagtcctgaatcttctgcagcatggagccgagcggagtttcttggctgagtgtgaggcgctaagaagtgttcggcatcgcaatcttgtaaagatcatcacagcctgttcgaccgtggatcactatggtaatgatttcaaagctttggtgtatgagttcatgcctaacagggacctggacaaatggctccatccgaccattgatgatgatgatgagagtttctcacgggtgttaaccatgtctgaaagactgaggattgcgctggatgttgctgaagctctcgattacctgcaccgccatggccaagtgcccattgttcactgtgatctgaagccaagcaatgtccttcttgacaatgacatggtcgcccatgtaggggactttgggctgtcacggtttgtgctgggaacaaacaacaattccatacagtattctagtatttcagctgggatcaaaggcactgtcggatatattcctccagaatatggaatgggtggtgaaatttcagtggagggggatgtctacagttacggaatcctgctgcttgagatgttcactgcaaagaggccaacagatgatttgtttcagggaagtagaagcatccgcagctatgttgcaacggcttatcctgacagggccatggagattgttgatcaagcaatgttgcagcttaaagagaaagatatgtttgaaaagaagaccgaaggatgtataatgtcagttctcagagtggcgctgcaatgtacagaggactccccgagagcaaggatgctcacaggatatgtcatcagagagctaatttctgtgaggaaTacttatgaaggttag
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| Protein seq | MGRGSEMHGQCLFIIVFLIHSVHVLPGCIAQSSDEQTLLAFKAAISGDPNGVLDTWVTTKGSMNATDSICRWRGVSCRSRQHPGRVTALELMSSNLMGVISPSLSNLSFLHTLNLSGNRLTGGIPLELGQLPRIRVISLGGNSLIGNIPVSLTNCARLTHLELPRNGLHGEIPANFSNCRELRVFNISANSLSGGIPASFGSLSKLEFLGLHRSNLIGGIPPSLGNMSSLLAFDASENSNLGGSIPDTLGRLTKLNFLRLAFAGLGGAIPFSLYNISSLTVLDLGNNDLSGMLPPDFGITLPRIQFLNLYNCRLQGSIPPSIGNATKLRRIQLQSNGLQGIVPPDIGRLKDLDKLNLQFNQLEDKWDKDWPLMAALGNCSRLFALSLSSNKFEGDLPASLVNLTIGIEKIFMNENRISGAIPSEIGKFRNLDVLALADNALTGTIPDTIGGLSSMTGLDVSGNNISGEIPPMLVANLSKLAFLDLSENDMEGSIPLSFERMSSIAILDLSYNQFSGMLPKQVLSLSSLTLFLNLSHNTFSGPIPSEVGRLSSLGVLDLSNNRLSGEIPQALAGCQSMEYLFLQGNQFGGRIPQSLVSLKGLQHLDMSQNNLSGPIPDFLATFQYLRYLNLSYNQLDGPVPTTGVFNATKDFFVGGNRVCGGVSELQLPKCPDRAGKGSHRSRTVLIVSVSVGSFVALVLIAGALFVCVLKPMKQVMQSNETSPRPLLMEQHWKLSYAELHRATDGFSAANLIGVGSFGSVYKGVVGSEEEEVAIKVLNLLQHGAERSFLAECEALRSVRHRNLVKIITACSTVDHYGNDFKALVYEFMPNRDLDKWLHPTIDDDDESFSRVLTMSERLRIALDVAEALDYLHRHGQVPIVHCDLKPSNVLLDNDMVAHVGDFGLSRFVLGTNNNSIQYSSISAGIKGTVGYIPPEYGMGGEISVEGDVYSYGILLLEMFTAKRPTDDLFQGSRSIRSYVATAYPDRAMEIVDQAMLQLKEKDMFEKKTEGCIMSVLRVALQCTEDSPRARMLTGYVIRELISVRNTYEG |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0020900 | OsLiXu_12g0020900.01 | Chr12 | 25577097 | 25580354 | + | NAM | ||
| CDS seq | atggggagaggcagcgagatgcatggccaatgtttgttcatcatcgttttcctcatccattctgtccatgtcctccccgggtgcatagctcagtctagtgatgagcaaacactgcttgcattcaaggccgccatctccggtgacccaaacggggttcttgatacatgggtcactacCAaGggaagcatgaatgccacagacagcatctgccggtggcgcggTgtgtcgtgccgatccaggcagcaccctggtcgtgtgacagcgctggagctcatgtcatccaacttgatgggtgtgataagcccaagtctgtccaatctttccttcctccacacactcaacctctctggcaaccgtctcactggtggcatcccgttggagcttggccagctacctcgcatacgggtcatcagccttggtgggaattctctgatcggtaacatacctgtgtctctcaccaattgtgctcgactcacacatctcgagttaccacggaatggattgcatggtgagattccagcgaacttcagcaactgcagggaactccgggtgttcaatatcagtgcgaacagcctgtctggtggcatccccgcatcattcgggtcactgtcgaagcttgagttcttgggcctgcatcggagcaacctcatcggcggcatcccaccatcattgggtaacatgtcctcactgttagcttttgatgccagtgagaattccaaccttggaggtagcatacctgacactctgggtagactcacaaagctgaactttctgaggttagcttttgctggtcttggaggggcaattccattctcgttgtataacatttcatcccttactgtacttgacttgggaaacaatgatctgtctggtatgctgccgcctgacttcggcatcaccctcccgagaatccagtttcttaatctgtacaactgtcggctccaaggaagcatcccaccatcgataggaaatgcgacgaaactccgtcggatccagcttcagagcaacggtctgcAgggaattgtgccacctgacattggtaggctgaaggatctcgataagctgaaccttcagttcaaccagttggaggacaagtGggacaaggactggccactgatggctgccttagggaattgcagtaggctttttgcactgagcctctcaagcaataagtttgaaggtgatctgccggcttctcttgtcaacctcacaattggaatagagaaaatcttTAtgaatgaaaacaggataagcggtgccattccctcggagattggcaagttcagaaatcttgatgttcttgctcttgctgacaatgcactgacgggcaccataccagacacaattggtggtctcagcagcatgaccgggctagatgtctcaggcaataacatatccggtgaaatcccgCcaatgctggttgcaaacctttctaagctcgctttcctggacctatcagagaatgacatggagggaagcatacctctgagctttgagagaatgagcagtattgcaatcctggacttgtcttacaatcagttcagtggcatgttaccgaaacaagttctgagcctctcgtctctaaccttgttcctgaacttgtctcacaacactttctcaggtccaattccttcagaagttggcagattaagcagccttggggttctcgacttgtcaaacaataggctgtctggagagataccacaggcgctagctgggtgtcaatcgatggagtacttgtttctgcaaggaaaccaatttggtggcagaattccccaatctcttgtatctctgaaagggcttcaacaccttgacatgtcacagaataacttgtctggtccaattccagatttccttgcaacttttcagtacttgcgatacttaaacttgtcctacaaccagcttgatggaccggtgccaacaactggagtgttcaatgctacgaaagacttctttGttggtggtaacagagtttgtggtggtgtttcagagttgcagctaccgaaatgtcctgatcgcgctggtaagggctcacatagatcaagaactgtgctgattgtgtcagtttctgttggatctttcgtggctctagtcctcatcgcaggcgccctttttgtatgtgttctgaagccaatgaaacaggttatgcagagtaatgagacatctcctcgaccattattgatggagcaacactggaaattatcctatgcagaactacatagggctactgacgggttctctgcagctaacctgattggtgttggaagctttggctcagtgtacaaaggagttgtaggctctgaagaggaggaagtcgcaataaaagtcctgaatcttctgcagcatggagccgagcggagtttcttggctgagtgtgaggcgctaagaagtgttcggcatcgcaatcttgtaaagatcatcacagcctgttcgaccgtggatcactatggtaatgatttcaaagctttggtgtatgagttcatgcctaacagggacctggacaaatggctccatccgaccattgatgatgatgatgagagtttctcacgggtgttaaccatgtctgaaagactgaggattgcgctggatgttgctgaagctctcgattacctgcaccgccatggccaagtgcccattgttcactgtgatctgaagccaagcaatgtccttcttgacaatgacatggtcgcccatgtaggggactttgggctgtcacggtttgtgctgggaacaaacaacaattccatacagtattctagtatttcagctgggatcaaaggcactgtcggatatattcctccagaatatggaatgggtggtgaaatttcagtggagggggatgtctacagttacggaatcctgctgcttgagatgttcactgcaaagaggccaacagatgatttgtttcagggaagtagaagcatccgcagctatgttgcaacggcttatcctgacagggccatggagattgttgatcaagcaatgttgcagcttaaagagaaagatatgtttgaaaagaagaccgaaggatgtataatgtcagttctcagagtggcgctgcaatgtacagaggactccccgagagcaaggatgctcacaggatatgtcatcagagagctaatttctgtgaggaaTacttatgaaggttag
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| Protein seq | MGRGSEMHGQCLFIIVFLIHSVHVLPGCIAQSSDEQTLLAFKAAISGDPNGVLDTWVTTKGSMNATDSICRWRGVSCRSRQHPGRVTALELMSSNLMGVISPSLSNLSFLHTLNLSGNRLTGGIPLELGQLPRIRVISLGGNSLIGNIPVSLTNCARLTHLELPRNGLHGEIPANFSNCRELRVFNISANSLSGGIPASFGSLSKLEFLGLHRSNLIGGIPPSLGNMSSLLAFDASENSNLGGSIPDTLGRLTKLNFLRLAFAGLGGAIPFSLYNISSLTVLDLGNNDLSGMLPPDFGITLPRIQFLNLYNCRLQGSIPPSIGNATKLRRIQLQSNGLQGIVPPDIGRLKDLDKLNLQFNQLEDKWDKDWPLMAALGNCSRLFALSLSSNKFEGDLPASLVNLTIGIEKIFMNENRISGAIPSEIGKFRNLDVLALADNALTGTIPDTIGGLSSMTGLDVSGNNISGEIPPMLVANLSKLAFLDLSENDMEGSIPLSFERMSSIAILDLSYNQFSGMLPKQVLSLSSLTLFLNLSHNTFSGPIPSEVGRLSSLGVLDLSNNRLSGEIPQALAGCQSMEYLFLQGNQFGGRIPQSLVSLKGLQHLDMSQNNLSGPIPDFLATFQYLRYLNLSYNQLDGPVPTTGVFNATKDFFVGGNRVCGGVSELQLPKCPDRAGKGSHRSRTVLIVSVSVGSFVALVLIAGALFVCVLKPMKQVMQSNETSPRPLLMEQHWKLSYAELHRATDGFSAANLIGVGSFGSVYKGVVGSEEEEVAIKVLNLLQHGAERSFLAECEALRSVRHRNLVKIITACSTVDHYGNDFKALVYEFMPNRDLDKWLHPTIDDDDESFSRVLTMSERLRIALDVAEALDYLHRHGQVPIVHCDLKPSNVLLDNDMVAHVGDFGLSRFVLGTNNNSIQYSSISAGIKGTVGYIPPEYGMGGEISVEGDVYSYGILLLEMFTAKRPTDDLFQGSRSIRSYVATAYPDRAMEIVDQAMLQLKEKDMFEKKTEGCIMSVLRVALQCTEDSPRARMLTGYVIRELISVRNTYEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.258226 | 0.0 | 0.428815 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0620000 | RBH | 0.941294 | 0.874327 | 0.567675 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42520 | RBH | 0.633536 | 0.625440 | 0.145438 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0620000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021160 | RBH | 0.301548 | 2.433876 | 1.771354 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021240 | RBH | 0.247397 | 1.365595 | 0.643929 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021600 | RBH | 0.788901 | 0.000000 | 3.225087 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020910 | RBH | 0.044304 | 0.037452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020560 | RBH | 3.618190 | 5.481104 | 3.083343 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0353900 | RBH | 0.3879795 | 0.682917 | 1.0448215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020430 | RBH | 0.107414 | 0.150399 | 0.499069 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0384800 | RBH | 1.9215695 | 4.197475 | 9.0018155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020690 | RBH | 0.141900 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020910 | RBH | 0.113116 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020830 | RBH | 2.865333 | 13.615043 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021110 | RBH | 0.123866 | 1.979496 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020580 | RBH | 0.189537 | 0.842129 | 1.072629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020360 | RBH | 0.832840 | 5.467422 | 1.473209 |
