Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0017250 | OGI:12060320 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:22241698-22246575 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaacaattttgttcattctttctggaagacttatagagcatcttacaacgaagcacagggctgaaCcctgatagagacatgacaaatgaaattaaaagacgaccaaaacgcattacccataaaatttaataataaaaatatgtcaaattgttgtggcttaacagaacaaataatatacctcagtattgtgctatgctttcaattaattgtatcaaaatcatcttctgccagttcttggtccatatcaataatctcttcttcatcccatctacttacttcAaaagtgagctcatcagaaaggaggccagctgcgcttttgatagcattctccaaggcctccacctcctgaagctttgcaccacggcaaataatctcaacatggagatgtttcagggaacagaggtgttggatgccaaaatccataccaccattcaaagagcatatatcacatgcattatatggaacccgaagcttttcaagttttggcatggctcctgcttcaaacatcatacctgtcttgctttcccaacaggtgaagtagagctccctcagacactggaacccattatagctgataattaacccttttttaggggttgctgctctagaggatatccaaagaaatattaaagacggcaagcccgcaagaatttggaatgtttcctcatccactgggttgatgtagatgtctaggtaactgaggtactcaagtgactctatccactttgggattctggggaaaaagtagcttatggacatctcaaatttctggaggagatgaggaggaggaaaccaagaatccagtaagaaatcaagggAaataatatgataaccttgaatttgtatagatcgaagattgaacatgcctagtttacagagggacgtgactaagttatctgcataaattttgatgtcacaatttgaatcactgatgctccaattcagcccaagaattcttagtttcttcagatttcccagctcctgcagagaatacactgatgtattgtggttgatttcaatctctgataattcctgtagagcttgcagatttccaatcccttcaggcaattctaaactgtttacccttaggcatactaatttctgcagtcgaacgatactagatggcaatttctttatttgtgtccatcttaagtctaaggtctgcaaattctgcaattctcctagttgttcaggaagtgcagtgattcttcttacattgagtcgcaggtacttcaattgagaaagcctgtgtatatgcttgagaaaactgtgatccaacaccattttattttctacatctaacactcgcatatattgcaattttgacagagcaggcatatgttcagcatatccaaagatagttagggatcggacatgagaaacaatcatacttgatggtatcattatatcttctcgagcatgatagttgagggataggcgacgaaccttattttgttgcactaTtttgtagttttggtcaccgtgcaaggttacaaaattttctttgacagatatggatatgatgagatcaagaatcatatcatgcacacgacaagcatcagctcgaccatcatattggatattaactggtagaatcatactcctgttgataagatcgttgaaatagcattcgcctacttcgtccatatcatgcaccccttctgtagggatgaaaccttcagcaatccatctccttattaaccgatctctcttgatctcgtaatcttctggaaaaatacttagatatagcaaacatgtcttcaaatggtaaggaagatcatcataactaaggagcaatatccttttcatttcttccacatctgtatctttttcaagagctgaaccaatagaattatgtatgctctcccattcttcttttgtactagctttattagccaataagctagctactgtgataattcccagtggcaagccaccacattttctcaagattgcattagaaacttctttcagatgaagagggcatttatcttcagaaccaaaagttcgtttgaaaaataagcttttagagtgaattgcaccaagaggctttatttcatatacattgtcatggtgaggtgagcaacaatacttagcaactgcgatgatacgtgtcgtcgtcaatattctactggaacagttattttcgggaaaagcacatttgattgttctccatgctgatgtgctccatatatcatcgataacaataaaatacctataaaaaaattgaagttaaacaggtattgctaaagctaaaagtataaccaagtggatagtagtaataagcaagtgtacatgcatcattccaaagatctgttgttttatcaattagttctaacatgaaaaagatcaatgcataattgatggtgttaaatgcatagagccccagacaaggttgtcatggaaacatggcacatacctcttatccttaaggaattgtcttattgtgtggatgagctgctgctcatcccatgcttcatcactgatacactctcgccagcagatctgagagagtatatgtctcagaatcttcttaatgtctGgtttttgggacactgacacaaaagcttgatacttaaattgtccttcaagcttccggcacacttcatttgcaagagtagtctttccaaggcctccaaatccaacaatggagaccaccttcagctgatgcaccaatgcgtcgtccccttccactagcatcttgatgagtttatcccttGggccatcaattccaacaagccttgtcgtctctgtgtagaatgctggtaagcgagggtctaagcttgtcctactcagtttggagacagaaccatcgaccttgtaccttgcacgccgattgctagcttctataacacagcatttgagacattggattttcttggcaatccaatggcgtgtcttgacatttgtcaagaagtccatgcacctgccagcaaaccccttgaagccacggggtctgcgattggactcatgaccaagggagaacatggaagcatcaatgatgtcttcaatgtcataggacagctccctgaactccttcatccagaacaaagattgctcatcggggtcctcaaactcatacatcttcttgaggaaaacatctatgctctcaagctcagctttaaggaacataatattactcttaacaccagtgagaaggttatattcatcagagagcaaggcacttagcttccatagcagggaccctacagctccatgtgatgcgcatacaacagcttccatccccctctctgtttgtgggtatggtgtgctctgcaactatgaaTtttccaggcaatcaggccttttatacatgcttagttagtcaaagtggacgtgcacaagaaaagaagatgattgcttgaagtgaacagggtggagggactagggagtaagcaggtggggtgtctgtagcatcttatgacataaaaacacataaacgggacaaattacatttcaatataagattgttccttaggaaaacaaatcaggaaacttgtcaggaagaaatcaagtgtgaattgcttatactagatatgcaaggttagacaattagtcaagaggaggaatgatgtcatatcatgtgtcattcattattatctagtgaatctacctagtgaagacagatgttggcaccacttaagttagacccttaggataatcgagcactcaagatcaaggtagaattagatacgacctagtcttcttttgaacaaattctaggacatagaaaatgacaggtttggagcatacttgtcaagattaataatatagccaattaagataaccgaggtggtctaacatgtataaatattgttgtccctgaaatgatagttcatacttggaaaaaatagttaactgtgtggtggttggtcttagtcttagcccaagtgtctgtccaacacactaaacatcaaacaaaagcgttcagaaatatataaataggagaaaaataaatggtataggaattattgaactgcaagacaagaggcaatagaaatttaccatttgaaaacccaagaccagtggttggctggtcagtctcagctttgaggaacatatggcacgttccttcacattggtgataatgtagtactcagctaatcaggttctatgtgattcctctactcaatatgaaagtgaaacatataaatgtactgataacatgtttgctacatatatgcaggaataccaaggcaactgactttagtcagacaggaaatctattgaccagagtgaagagcaggtattctctccaaaagcaatcactcatggtcatatAaaaactagaaaaggctatacaattgggcaaagtatatttcaagatatgctaactttgtcaaggtgagacaaaaagaaataaagcagttacatctattcaggttagagtaagtgcgaaatttcataagacgtgcagatccagatccagggacagtcaagctgtccagaagaaagatagcaccatcatccaatcattcttacgtttatagctagtcaacatcaatcattcaaagaattctctacctgcaagagaccggccaatggagccgcagcgcctgaggaagaaatcgccatctacaagacgaagcccaaaacgtggctggcaagttcagtctcgcggaatcaaagaaacttcccggacaaccacactggaacacccccttcctttctttgggggtccccggccggccttctccgccggcgaccatcgcggctgtcacggcggcgcaggtgaggggacgggaagggttttgggtacagtcgtacttccgttggtggaggtaggaggagaagagtataggggaaggaggagggagggagaggcggccgtcgccgccggcggcggagatggctcgccggagtggcggaggcgatgct
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| CDS seq | atggcgatttcttcctcaggcgctgcggctccattggccggtctcttgcagagcacaccatacccacaaacagagagggggatggaagctgttgtatgcgcatcacatggagctgtagggtccctgctatggaagctaagtgccttgctctctgatgaatataaccttctcactggtgttaagagtaatattatgttccttaaagctgagcttgagagcatagatgttttcctcaagaagatgtatgagtttgaggaccccgatgagcaatctttgttctggatgaaggagttcagggagctgtcctatgacattgaagacatcattgatgcttccatgttctcccttggtcatgagtccaatcgcagaccccgtggcttcaaggggtttgctggcaggtgcatggacttcttgacaaatgtcaagacacgccattggattgccaagaaaatccaatgtctcaaatgctgtgttatagaagctagcaatcggcgtgcaaggtacaaggtcgatggttctgtctccaaactgagtaggacaagcttagaccctcgcttaccagcattctacacagagacgacaaggcttgttggaattgatggccCaagggataaactcatcaagatgctagtggaaggggacgacgcattggtgcatcagctgaaggtggtctccattgttggatttggaggccttggaaagactactcttgcaaatgaagtgtgccggaagcttgaaggacaatttaagtatcaagcttttgtgtcagtgtcccaaaaacCagacattaagaagattctgagacatatactctctcagatctgctggcgagagtgtatcagtgatgaagcatgggatgagcagcagctcatccacacaataagacaattccttaaggataagaggtattttattgttatcgatgatatatggagcacatcagcatggagaacaatcaaatgtgcttttcccgaaaataactgttccagtagaatattgacgacgacacgtatcatcgcagttgctaagtattgttgctcacctcaccatgacaatgtatatgaaataaagcctcttggtgcaattcactctaaaagcttatttttcaaacgaacttttggttctgaagataaatgccctcttcatctgaaagaagtttctaatgcaatcttgagaaaatgtggtggcttgccactgggaattatcacagtagctagcttattggctaataaagctagtacaaaagaagaatgggagagcatacataattctattggttcagctcttgaaaaagatacagatgtggaagaaatgaaaaggatattgctccttagttatgatgatcttccttaccatttgaagacatgtttgctatatctaagtatttttccagaagattacgagatcaagagagatcggttaataaggagatggattgctgaaggtttcatccctacagaaggggtgcatgatatggacgaagtaggcgaatgctatttcaacgatcttatcaacaggagtatgattctaccagttaatatccaatatgatggtcgagctgatgcttgtcgtgtgcatgatatgattcttgatctcatcatatccatatctgtcaaagaaaattttgtaaccttgcacggtgaccaaaactacaaaAtagtgcaacaaaataaggttcgtcgcctatccctcaactatcatgctcgagaagatataatgataccatcaagtatgattgtttctcatgtccgatccctaactatctttggatatgctgaacatatgcctgctctgtcaaaattgcaatatatgcgagtgttagatgtagaaaataaaatggtgttggatcacagttttctcaagcatatacacaggctttctcaattgaagtacctgcgactcaatgtaagaagaatcactgcacttcctgaacaactaggagaattgcagaatttgcagaccttagacttaagatggacacaaataaagaaattgccatctagtatcgttcgactgcagaaattagtatgcctaagggtaaacagtttagaattgcctgaagggattggaaatctgcaagctctacaggaattatcagagattgaaatcaaccacaatacatcagtgtattctctgcaggagctgggaaatctgaagaaactaagaattcttgggctgaattggagcatcagtgattcaaattgtgacatcaaaatttatgcagataacttagtcacgtccctctgtaaactaggcatgttcaatcttcgatctatacaaattcaaggttatcatattattTcccttgatttcttactggattcttggtttcctcctcctcatctcctccagaaatttgagatgtccataagctactttttccccagaatcccaaagtggatagagtcacttgagtacctcagttacctagacatctacatcaacccagtggatgaggaaacattccaaattcttgcgggcttgccgtctttaatatttctttggatatcctctagagcagcaacccctaaaaaagggttaattatcagctataatgggttccagtgtctgagggagctctacttcacctgttgggaaagcaagacaggtatgatgtttgaagcaggagccatgccaaaacttgaaaagcttcgggttccatataatgcatgtgatatatgctctttgaatggtggtatggattttggcatccaacacctctgttccctgaaacatctccatgttgagattatttgccgtggtgcaaagcttcaggaggtggaggccttggagaatgctatcaaaagcgcagctggcctcctttctgatgagctcactttTgaagtaagtagatgggatgaagaagagattattgatatggaccaagaactggcagaagatgattttgatacaattaattga
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| Protein seq | MAISSSGAAAPLAGLLQSTPYPQTERGMEAVVCASHGAVGSLLWKLSALLSDEYNLLTGVKSNIMFLKAELESIDVFLKKMYEFEDPDEQSLFWMKEFRELSYDIEDIIDASMFSLGHESNRRPRGFKGFAGRCMDFLTNVKTRHWIAKKIQCLKCCVIEASNRRARYKVDGSVSKLSRTSLDPRLPAFYTETTRLVGIDGPRDKLIKMLVEGDDALVHQLKVVSIVGFGGLGKTTLANEVCRKLEGQFKYQAFVSVSQKPDIKKILRHILSQICWRECISDEAWDEQQLIHTIRQFLKDKRYFIVIDDIWSTSAWRTIKCAFPENNCSSRILTTTRIIAVAKYCCSPHHDNVYEIKPLGAIHSKSLFFKRTFGSEDKCPLHLKEVSNAILRKCGGLPLGIITVASLLANKASTKEEWESIHNSIGSALEKDTDVEEMKRILLLSYDDLPYHLKTCLLYLSIFPEDYEIKRDRLIRRWIAEGFIPTEGVHDMDEVGECYFNDLINRSMILPVNIQYDGRADACRVHDMILDLIISISVKENFVTLHGDQNYKIVQQNKVRRLSLNYHAREDIMIPSSMIVSHVRSLTIFGYAEHMPALSKLQYMRVLDVENKMVLDHSFLKHIHRLSQLKYLRLNVRRITALPEQLGELQNLQTLDLRWTQIKKLPSSIVRLQKLVCLRVNSLELPEGIGNLQALQELSEIEINHNTSVYSLQELGNLKKLRILGLNWSISDSNCDIKIYADNLVTSLCKLGMFNLRSIQIQGYHIISLDFLLDSWFPPPHLLQKFEMSISYFFPRIPKWIESLEYLSYLDIYINPVDEETFQILAGLPSLIFLWISSRAATPKKGLIISYNGFQCLRELYFTCWESKTGMMFEAGAMPKLEKLRVPYNACDICSLNGGMDFGIQHLCSLKHLHVEIICRGAKLQEVEALENAIKSAAGLLSDELTFEVSRWDEEEIIDMDQELAEDDFDTIN |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0017250 | OsLiXu_12g0017250.01 | Chr12 | 22241698 | 22246575 | - | NAM | ||
| CDS seq | atggcgatttcttcctcaggcgctgcggctccattggccggtctcttgcagagcacaccatacccacaaacagagagggggatggaagctgttgtatgcgcatcacatggagctgtagggtccctgctatggaagctaagtgccttgctctctgatgaatataaccttctcactggtgttaagagtaatattatgttccttaaagctgagcttgagagcatagatgttttcctcaagaagatgtatgagtttgaggaccccgatgagcaatctttgttctggatgaaggagttcagggagctgtcctatgacattgaagacatcattgatgcttccatgttctcccttggtcatgagtccaatcgcagaccccgtggcttcaaggggtttgctggcaggtgcatggacttcttgacaaatgtcaagacacgccattggattgccaagaaaatccaatgtctcaaatgctgtgttatagaagctagcaatcggcgtgcaaggtacaaggtcgatggttctgtctccaaactgagtaggacaagcttagaccctcgcttaccagcattctacacagagacgacaaggcttgttggaattgatggccCaagggataaactcatcaagatgctagtggaaggggacgacgcattggtgcatcagctgaaggtggtctccattgttggatttggaggccttggaaagactactcttgcaaatgaagtgtgccggaagcttgaaggacaatttaagtatcaagcttttgtgtcagtgtcccaaaaacCagacattaagaagattctgagacatatactctctcagatctgctggcgagagtgtatcagtgatgaagcatgggatgagcagcagctcatccacacaataagacaattccttaaggataagaggtattttattgttatcgatgatatatggagcacatcagcatggagaacaatcaaatgtgcttttcccgaaaataactgttccagtagaatattgacgacgacacgtatcatcgcagttgctaagtattgttgctcacctcaccatgacaatgtatatgaaataaagcctcttggtgcaattcactctaaaagcttatttttcaaacgaacttttggttctgaagataaatgccctcttcatctgaaagaagtttctaatgcaatcttgagaaaatgtggtggcttgccactgggaattatcacagtagctagcttattggctaataaagctagtacaaaagaagaatgggagagcatacataattctattggttcagctcttgaaaaagatacagatgtggaagaaatgaaaaggatattgctccttagttatgatgatcttccttaccatttgaagacatgtttgctatatctaagtatttttccagaagattacgagatcaagagagatcggttaataaggagatggattgctgaaggtttcatccctacagaaggggtgcatgatatggacgaagtaggcgaatgctatttcaacgatcttatcaacaggagtatgattctaccagttaatatccaatatgatggtcgagctgatgcttgtcgtgtgcatgatatgattcttgatctcatcatatccatatctgtcaaagaaaattttgtaaccttgcacggtgaccaaaactacaaaAtagtgcaacaaaataaggttcgtcgcctatccctcaactatcatgctcgagaagatataatgataccatcaagtatgattgtttctcatgtccgatccctaactatctttggatatgctgaacatatgcctgctctgtcaaaattgcaatatatgcgagtgttagatgtagaaaataaaatggtgttggatcacagttttctcaagcatatacacaggctttctcaattgaagtacctgcgactcaatgtaagaagaatcactgcacttcctgaacaactaggagaattgcagaatttgcagaccttagacttaagatggacacaaataaagaaattgccatctagtatcgttcgactgcagaaattagtatgcctaagggtaaacagtttagaattgcctgaagggattggaaatctgcaagctctacaggaattatcagagattgaaatcaaccacaatacatcagtgtattctctgcaggagctgggaaatctgaagaaactaagaattcttgggctgaattggagcatcagtgattcaaattgtgacatcaaaatttatgcagataacttagtcacgtccctctgtaaactaggcatgttcaatcttcgatctatacaaattcaaggttatcatattattTcccttgatttcttactggattcttggtttcctcctcctcatctcctccagaaatttgagatgtccataagctactttttccccagaatcccaaagtggatagagtcacttgagtacctcagttacctagacatctacatcaacccagtggatgaggaaacattccaaattcttgcgggcttgccgtctttaatatttctttggatatcctctagagcagcaacccctaaaaaagggttaattatcagctataatgggttccagtgtctgagggagctctacttcacctgttgggaaagcaagacaggtatgatgtttgaagcaggagccatgccaaaacttgaaaagcttcgggttccatataatgcatgtgatatatgctctttgaatggtggtatggattttggcatccaacacctctgttccctgaaacatctccatgttgagattatttgccgtggtgcaaagcttcaggaggtggaggccttggagaatgctatcaaaagcgcagctggcctcctttctgatgagctcactttTgaagtaagtagatgggatgaagaagagattattgatatggaccaagaactggcagaagatgattttgatacaattaattga
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| Protein seq | MAISSSGAAAPLAGLLQSTPYPQTERGMEAVVCASHGAVGSLLWKLSALLSDEYNLLTGVKSNIMFLKAELESIDVFLKKMYEFEDPDEQSLFWMKEFRELSYDIEDIIDASMFSLGHESNRRPRGFKGFAGRCMDFLTNVKTRHWIAKKIQCLKCCVIEASNRRARYKVDGSVSKLSRTSLDPRLPAFYTETTRLVGIDGPRDKLIKMLVEGDDALVHQLKVVSIVGFGGLGKTTLANEVCRKLEGQFKYQAFVSVSQKPDIKKILRHILSQICWRECISDEAWDEQQLIHTIRQFLKDKRYFIVIDDIWSTSAWRTIKCAFPENNCSSRILTTTRIIAVAKYCCSPHHDNVYEIKPLGAIHSKSLFFKRTFGSEDKCPLHLKEVSNAILRKCGGLPLGIITVASLLANKASTKEEWESIHNSIGSALEKDTDVEEMKRILLLSYDDLPYHLKTCLLYLSIFPEDYEIKRDRLIRRWIAEGFIPTEGVHDMDEVGECYFNDLINRSMILPVNIQYDGRADACRVHDMILDLIISISVKENFVTLHGDQNYKIVQQNKVRRLSLNYHAREDIMIPSSMIVSHVRSLTIFGYAEHMPALSKLQYMRVLDVENKMVLDHSFLKHIHRLSQLKYLRLNVRRITALPEQLGELQNLQTLDLRWTQIKKLPSSIVRLQKLVCLRVNSLELPEGIGNLQALQELSEIEINHNTSVYSLQELGNLKKLRILGLNWSISDSNCDIKIYADNLVTSLCKLGMFNLRSIQIQGYHIISLDFLLDSWFPPPHLLQKFEMSISYFFPRIPKWIESLEYLSYLDIYINPVDEETFQILAGLPSLIFLWISSRAATPKKGLIISYNGFQCLRELYFTCWESKTGMMFEAGAMPKLEKLRVPYNACDICSLNGGMDFGIQHLCSLKHLHVEIICRGAKLQEVEALENAIKSAAGLLSDELTFEVSRWDEEEIIDMDQELAEDDFDTIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.071227 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0564800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0564800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017510 | RBH | 0.108978 | 1.149927 | 1.109993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017630 | RBH | 0.037530 | 0.0 | 0.558305 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018000 | RBH | 0.0 | 0.649165 | 2.609972 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017320 | RBH | 0.031250 | 0.034465 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016900 | RBH | 0.305825 | 0.0 | 0.989929 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0307400 | RBH | 0.4663785 | 0.39997 | 0.831343 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016800 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0338600 | RBH | 0.2021415 | 0.0689375 | 2.5967275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017040 | RBH | 0.024631 | 0.036489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017300 | RBH | 0.053287 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023730 | SBH | 0.332499 | 0.0 | 1.178051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017410 | RBH | 0.034492 | 0.405105 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017170 | RBH | 0.026209 | 0.124894 | 0.148296 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016840 | RBH | 0.079447 | 1.142222 | 0.261122 |
