Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0017060 | OGI:12060070 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:22114554-22119035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttgctcgggcgtcttatctcgcggcgcgttcttggtggccatccaatccaatcgaatccgcgcgaaatccaatccctaatcccgcatcttatcgtcccaaatcatcgccccgaggttggCCccgcgatcttggggtgaattggtggcggtggtgatgtggaggagtccgtgatcttGgttggTggggttgggaatttgggaggtgtttgatcgggtttgggaggagtccggcgacgatggcgacgccgacgcacttcacgccgtcgcagacgcacgccgcggcgtcgcaccaccacccgtccgcggcggcggcggcgagcgcggcgtccgcgcggctccacgcgtcggcgcagccggcgtcggcggcggcgtcggcgtcggccgcggcggcggcgctgtgcccgccgttccccgcggcgggggcggcgtgcccgccagcgcagggccccatcttcggcggggggCccggggcgaagccgtgggtggtgcagcagcagcagccacagcgcgccgcggcggcggcgctggggccggagttcaggcgcgcgcgCtccacgaggaacatctccaagcgcagccgcggcggcgcgtggggcgcgcaggaccGggggggcggcgcgcgcggcgggcccttctccgccgccgcggggcgctgcgtggagaagctgctccgcgtggcgcccgacgaccgccgcGcgctcggcgcggccctcgcctcctcccgcggcgagctggtggctcccgatgactactgccatgtcctgcgagagctcggcgaccgggacaaatccgcgctccgtgcgttcgaggtgttccacgccgcgctgccgcatgtcggcaatggcgccgtcgacaaaggcaagCTcTCCTGACTGCTTCCATTGGTGCGCTCGGCAAGATGGGGAGACCAGACCTTGCAAGGAGAGCCTTCGATGCTGGCGTTGCGGGGGGTTACGGCAACACGGTGTTTGCGCATTCGGCTCTAATTTCAGCGTATGCAAGGAGCGGTCTTGCGAATGAGGCCATGGGGGTGCTCGAGTCGATGAAAGGTGCAGGACTGCGGCCTACCACGGTGTCTTACAATGCGGTGATTGATGCGTGTGGTAAAGGCGGCGTCGACCTTAGGTTCACACTTGGTTATTTCCGGCAGATGCTGAAGGATGGGCTTTGTCCGGACCGGAAGACTTTCAATTCGCTTCTCGCTGCATGTAGCCGCGTGGGGCATTTGGAAGATGCCCGTGCTGTCTTTGATGAAATGATCCATCTTGGCATTtgggcgtgacatatacacgtacaacAcgtttattgatgccatttgcaagtgtggaaacatggagcttgctatgcaggttctgttggatatggaagcgaaaggcgttaagccaaatgttgttacatacagtacactgattgatggatattccaagttagagaagtacgaggaggcactcaagttgtgtgaaaagatgaagtctatgagaattcaactggaccgagtttgctaCaacaccttgctggCgatttatgtgaaggcaggaaagtatgctgaaattgCtaatgtctgtgacgagatggaagagctggggattgagaaggacactgtcacctacaactctttgattaatgggtatggaaagcagggacgcttggatatcgtttctatccTtgttcaagatatgaggAaacggggggtagctcctagtgtattaacttattcaactttgatagatatatattcaaaggcagggatgcatggagatgcattcaatgtctacttggattttaaggagtcaggcctaaagccagatgttgttctattcagctctttcattgatacattggccaagaacggcttgatagagtGggctttatctctgcttaatgatatgacggagatgggtatcaagccaaatgtggttacctataatgcaataatcgatgcatttggcaagtcaaaggttatgatggaggatgattctgaagttggtgacatgggtaTtgttggggTttatggtggccaaattgttagggttgctaatccagtgtctagaggagggcgttctgcaactgatgtctggatgaggaggtcacaggaactgttcttcattctagaattgtttcagaagatggtccagcagggtgtaaggccaaatgttgtaactttttctgcaatcttaaatgcttgcaggtacatcttcgtcttattttgttAaagtctttaactctaatgaggttctgatcctgtaggtattatttagttattttgacaggaaaagaaaaaagagtataactctcctggtgttgttcttgttgaaagttcAaaattttttgctttatcatgcttgaaactagAatacgtttccctcaacaacttaataactaatttcagtatggaatatttattttttgtcaattgtcaaacattagtcttgttctatgacttatttttctgtcttaatactactagaaaGggggtaggctgtatgtgtcttcatgatctcacatgcgttttatccccaaaaaattgaaaacaGaaaagaCaagcctatgtttatctaggaaactaagctgTtatatctggtgtttacatagtcatatctggtgttaaCtgtttgctttgaTgttgtttttgcagtcgctgtaatagtttcgaggatgcagccctgttactggaacaacttcgcttatttgataactttgtctatggtgttgcTtatggtcTtctggtcggttctcgagaagtttggtcacaagctcaatcgttatttaatcagttaggacgcatggactctccaacatcctctgccTtttacAatgctcttactgatgtgctatggcatttcggccaggtaggaTttgcttccgaatcttctgatcactaatattttgtgataatcataatttcaagtcattggtttcattctagaagaataaatagtctcgtgggagtgtttggttaatacatttagttttcaagtttttctattatttttcatctcaattcctttttAaacactTAattttttcctttatttgagaaagaacaatctcagtcttgtccttgatttacttgtattttggttttttttgctaatattaactactccgtttcatattataagtcgttttgacTttttttcttagtcaaactttttaagttTaaccaagtttatagaaaaatatagtagtatttccaacacaaaacAAccatattattaaaatatattcaatgttagatttagtgaaaccaaTttgatatttcatatgttgctatatttttctataaacttggtcaaacttaataaagtttgactaagaaaaaagtctaatgagttataatatgaaatggagggagtaTttttatttggtgcgagtgacaacatgaaatttccattgaaatttgtttttggacaaaaattctgttgaaatcctctgctggttttttCttttgataacttggtgggtagttatttgaattaaactatcttatgtagagcagcaagtattgcttgccatgtgaaacccccttttagttatatctgcaaggattattcaggTtgGTgattatcatgacatatttgtgtcactgaccaTtttcagaggcgaaaagctcagcaagttgtgtttgaagggataaatcgtcgtgtctgggagaacacatggggtgagttttgcttggacctgcaccttatgtcAtgtggtgcagctcaagcaatggtccatgcctggctcctgAatgtgcgctctatcgtctttgaaggaagagctatgcctgaatttttaaggtgcgtggtcctaaagttcaagaacagattttccttcctgttctttgtcacattgatcacgtgtctgcaagatatagagtttcaggatataatattttttggtctggTtgtatgttattaagcagctgtgtgcctttgtgcactaaatctaagtttctgtacatctctacagcattcttacagggtggggaaagcatagcaggattgctggtgcaagcaccctccgccgtgtcattgaagcactgctcaattcaatcggagcgccgttccaggttgagcggttcaacatcggaaggttcgtgtcacccagcgctgtggtggcagcctggttgagagaatcgggcaccttcaacatcctTCtcctccacgacgagcgggttcagcaagcagccccatccaatctggtaCcgaggttacaagccttgcagttgtagcaaagCcccatagggcaggctcgcccttccttgtagtgttgtatctgtaatccttccaattcttcttaagttcatcttctcactttcagaaagaTgtagttgtatcataggcgcagcggttagctcctcttctgctaaaaaaatcttactactgtcagccagcaatgttgtaaattttggcaattctgcctttcaaactccttttcatcaagaggggaaatttcaaagaataccagaatccctccaaaggtatcatcagcata
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| CDS seq | atggcgacgccgacgcacttcacgccgtcgcagacgcacgccgcggcgtcgcaccaccacccgtccgcggcggcggcggcgagcgcggcgtccgcgcggctccacgcgtcggcgcagccggcgtcggcggcggcgtcggcgtcggccgcggcggcggcgctgtgcccgccgttccccgcggcgggggcggcgtgcccgccagcgcagggccccatcttcggcggggggCccggggcgaagccgtgggtggtgcagcagcagcagccacagcgcgccgcggcggcggcgctggggccggagttcaggcgcgcgcgCtccacgaggaacatctccaagcgcagccgcggcggcgcgtggggcgcgcaggaccGggggggcggcgcgcgcggcgggcccttctccgccgccgcggggcgctgcgtggagaagctgctccgcgtggcgcccgacgaccgccgcGcgctcggcgcggccctcgcctcctcccgcggcgagctggtggctcccgatgactactgccatgtcctgcgagagctcggcgaccgggacaaatccgcgctccgtgcgttcgagATGGGGAGACCAGACCTTGCAAGGAGAGCCTTCGATGCTGGCGTTGCGGGGGGTTACGGCAACACGGTGTTTGCGCATTCGGCTCTAATTTCAGCGTATGCAAGGAGCGGTCTTGCGAATGAGGCCATGGGGGTGCTCGAGTCGATGAAAGGTGCAGGACTGCGGCCTACCACGGTGTCTTACAATGCGgttctgttggatatggaagcgaaaggcgttaagccaaatgttgttacatacagtacactgattgatggatattccaagttagagaagtacgaggaggcactcaagttgtgtgaaaagatgaagtctatgagaattcaactggaccgagtttgctaCaacaccttgctggCgatttatgtgaaggcaggaaagtatgctgaaattgCtaatgtctgtgacgagatggaagagctggggattgagaaggacactgtcacctacaactctttgattaatgggtatggaaagcagggacgcttggatatcgtttctatccTtgttcaagatatgaggAaacggggggtagctcctagtgtattaacttattcaactttgatagatatatattcaaaggcagggatgcatggagatgcattcaatgtctacttggattttaaggagtcaggcctaaagccagatgttgttctattcagctctttcattgatacattggccaagaacggcttgatagagtGggctttatctctgcttaatgatatgacggagatgggtatcaagccaaatgtggttacctataatgcaataatcgatgcatttggcaagtcaaaggttatgatggaggatgattctgaagttggtgacatgggtaTtgttggggTttatggtggccaaattgttagggttgctaatccagtgtctagaggagggcgttctgcaactgatgtctggatgaggaggtcacaggaactgttcttcattctagaattgtttcagaagatggtccagcagggtgtaaggccaaatgttgtaactttttctgcaatcttaaatgcttgcagtcgctgtaatagtttcgaggatgcagccctgttactggaacaacttcgcttatttgataactttgtctatggtgttgcTtatggtcTtctgttaggacgcatggactctccaacatcctctgccTtttacAatgctcttactgatgtgctatggcatttcggccagaggcgaaaagctcagcaagttgtgtttgaagggataaatcgtcgtgtctgggagaacacatgggctcaagcaatggtccatgcctggctcctgAatgtgcgctctatcgtctttgaaggaagagctatgcctgaatttttaagcattcttacagggtggggaaagcatagcaggattgctggtgcaagcaccctccgccgtgtcattgaagcactgctcaattcaatcggagcgccgttccaggttgagcggttcaacatcggaaggttcgtgtcacccagcgctgtggtggcagcctggttgagagaatcgggcaccttcaacatcctTCtcctccacgacgagcgggttcagcaagcagccccatccaatctggtaCcgaggttacaagccttgcagttgtag
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| Protein seq | MATPTHFTPSQTHAAASHHHPSAAAAASAASARLHASAQPASAAASASAAAAALCPPFPAAGAACPPAQGPIFGGGPGAKPWVVQQQQPQRAAAAALGPEFRRARSTRNISKRSRGGAWGAQDRGGGARGGPFSAAAGRCVEKLLRVAPDDRRALGAALASSRGELVAPDDYCHVLRELGDRDKSALRAFEMGRPDLARRAFDAGVAGGYGNTVFAHSALISAYARSGLANEAMGVLESMKGAGLRPTTVSYNAVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVWMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLLGRMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINRRVWENTWAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALLNSIGAPFQVERFNIGRFVSPSAVVAAWLRESGTFNILLLHDERVQQAAPSNLVPRLQALQL |
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| Function | Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [UniProtKB/Swiss-Prot:Q9SIC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0017060 | OsLiXu_12g0017060.01 | Chr12 | 22114554 | 22119035 | + | NAM | ||
| CDS seq | atggcgacgccgacgcacttcacgccgtcgcagacgcacgccgcggcgtcgcaccaccacccgtccgcggcggcggcggcgagcgcggcgtccgcgcggctccacgcgtcggcgcagccggcgtcggcggcggcgtcggcgtcggccgcggcggcggcgctgtgcccgccgttccccgcggcgggggcggcgtgcccgccagcgcagggccccatcttcggcggggggCccggggcgaagccgtgggtggtgcagcagcagcagccacagcgcgccgcggcggcggcgctggggccggagttcaggcgcgcgcgCtccacgaggaacatctccaagcgcagccgcggcggcgcgtggggcgcgcaggaccGggggggcggcgcgcgcggcgggcccttctccgccgccgcggggcgctgcgtggagaagctgctccgcgtggcgcccgacgaccgccgcGcgctcggcgcggccctcgcctcctcccgcggcgagctggtggctcccgatgactactgccatgtcctgcgagagctcggcgaccgggacaaatccgcgctccgtgcgttcgagATGGGGAGACCAGACCTTGCAAGGAGAGCCTTCGATGCTGGCGTTGCGGGGGGTTACGGCAACACGGTGTTTGCGCATTCGGCTCTAATTTCAGCGTATGCAAGGAGCGGTCTTGCGAATGAGGCCATGGGGGTGCTCGAGTCGATGAAAGGTGCAGGACTGCGGCCTACCACGGTGTCTTACAATGCGgttctgttggatatggaagcgaaaggcgttaagccaaatgttgttacatacagtacactgattgatggatattccaagttagagaagtacgaggaggcactcaagttgtgtgaaaagatgaagtctatgagaattcaactggaccgagtttgctaCaacaccttgctggCgatttatgtgaaggcaggaaagtatgctgaaattgCtaatgtctgtgacgagatggaagagctggggattgagaaggacactgtcacctacaactctttgattaatgggtatggaaagcagggacgcttggatatcgtttctatccTtgttcaagatatgaggAaacggggggtagctcctagtgtattaacttattcaactttgatagatatatattcaaaggcagggatgcatggagatgcattcaatgtctacttggattttaaggagtcaggcctaaagccagatgttgttctattcagctctttcattgatacattggccaagaacggcttgatagagtGggctttatctctgcttaatgatatgacggagatgggtatcaagccaaatgtggttacctataatgcaataatcgatgcatttggcaagtcaaaggttatgatggaggatgattctgaagttggtgacatgggtaTtgttggggTttatggtggccaaattgttagggttgctaatccagtgtctagaggagggcgttctgcaactgatgtctggatgaggaggtcacaggaactgttcttcattctagaattgtttcagaagatggtccagcagggtgtaaggccaaatgttgtaactttttctgcaatcttaaatgcttgcagtcgctgtaatagtttcgaggatgcagccctgttactggaacaacttcgcttatttgataactttgtctatggtgttgcTtatggtcTtctgttaggacgcatggactctccaacatcctctgccTtttacAatgctcttactgatgtgctatggcatttcggccagaggcgaaaagctcagcaagttgtgtttgaagggataaatcgtcgtgtctgggagaacacatgggctcaagcaatggtccatgcctggctcctgAatgtgcgctctatcgtctttgaaggaagagctatgcctgaatttttaagcattcttacagggtggggaaagcatagcaggattgctggtgcaagcaccctccgccgtgtcattgaagcactgctcaattcaatcggagcgccgttccaggttgagcggttcaacatcggaaggttcgtgtcacccagcgctgtggtggcagcctggttgagagaatcgggcaccttcaacatcctTCtcctccacgacgagcgggttcagcaagcagccccatccaatctggtaCcgaggttacaagccttgcagttgtag
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| Protein seq | MATPTHFTPSQTHAAASHHHPSAAAAASAASARLHASAQPASAAASASAAAAALCPPFPAAGAACPPAQGPIFGGGPGAKPWVVQQQQPQRAAAAALGPEFRRARSTRNISKRSRGGAWGAQDRGGGARGGPFSAAAGRCVEKLLRVAPDDRRALGAALASSRGELVAPDDYCHVLRELGDRDKSALRAFEMGRPDLARRAFDAGVAGGYGNTVFAHSALISAYARSGLANEAMGVLESMKGAGLRPTTVSYNAVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVWMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLLGRMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINRRVWENTWAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALLNSIGAPFQVERFNIGRFVSPSAVVAAWLRESGTFNILLLHDERVQQAAPSNLVPRLQALQL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0017060 | OsLiXu_12g0017060.02 | Chr12 | 22116278 | 22119033 | + | IsoSeq | ||
| CDS seq | atgcttgcagtcgctgtaatagtttcgaggatgcagccctgttactggaacaacttcgcttatttgataactttgtctatggtgttgcTtatggtcTtctggtcggttctcgagaagtttggtcacaagctcaatcgttatttaatc |
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| Protein seq | MLAVAVIVSRMQPCYWNNFAYLITLSMVLLMVFWSVLEKFGHKLNRYLI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 22117189 | 22117402 | + | OsLiXu_12g0017060.02 | OsLiXu_12g0017060.01,OsLiXu_12g0017060.02 | All |
| RI | Chr12 | 22118154 | 22118338 | + | OsLiXu_12g0017060.02 | OsLiXu_12g0017060.01,OsLiXu_12g0017060.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.486865 | 0.0 | 3.369067 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0562300 | RBH | 6.889984 | 7.204619 | 5.366262 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37550 | RBH | 7.051607 | 5.958035 | 1.628132 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0562300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017320 | RBH | 1.184287 | 21.029663 | 9.995096 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017440 | RBH | 0.794019 | 2.589154 | 4.330982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017810 | RBH | 2.698558 | 13.858171 | 12.350883 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017130 | RBH | 0.462636 | 0.328798 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016710 | RBH | 13.625164 | 12.794956 | 22.901695 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0305600 | RBH | 15.2472235 | 19.7355185 | 27.3511535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016630 | RBH | 0.577121 | 1.342903 | 1.805408 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0337200 | RBH | 22.210583 | 22.2608985 | 11.9713495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016860 | RBH | 0.584636 | 0.127102 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017100 | RBH | 0.966827 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017070 | RBH | 6.263218 | 14.194113 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017220 | RBH | 0.678381 | 5.396151 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016990 | RBH | 0.817860 | 3.462960 | 5.050399 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016660 | RBH | 2.520525 | 20.200863 | 10.474871 |
