Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0016910 | OGI:12059670 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:22019554-22020839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttggggagtggaggccAtttttcatttctgacaagatgaggttgttgcgtgtgctcgacttggaagacacagaaggtgtacgtaatcaccatattaagcaaataggggagcttcttcaccttagatacctttctctaagaggatgtatgcacattgcttacctgcctgattctttgggtaacctaagacaactggagacactagatgtcAGaggtatgcacatagacaggctgccaaagaccatcattaatcttcggaagctaaagtatctctgtgcaagtgtagacgaaaacacctatgaaggaatagcagaggaactaccagagctcaTtaggaacaggctatgcatttctactgttgcgttgctggggctttgtctgttctgctcagcaaGtgtaattgtaaagtttgatacagggattaatacccGtgacatctgctgcctgttttgctgcggtattctccctagcattgctatgcgCctccaagggaatggtgtagtagcaccaagagggctgaggagactgacagccctgcacacgctaggtgtggtggacatttcatggcagccatcaattttacaagatatcaagaggctcacccacctgcgcaaattggaaGtgaccggtgtcaacaAGaaaaacagcaaaaagtttttatctgcccttgccgctctcagccgcctggaatcattgtcactgatctcaaaggggaagctaggtctctGgggctgtctggatgctgaagAaaagttttcgccacctaaggatctcaagagtctgaagctacacggcaatctggttgagttgccaaaatggatcgggaagctcaacaatctcgtgaagctgaagctatcagaaatcGggctcaaggatcatgatgctgctatacaagtccttggtaagctacgaaacctgtccatccattgcctgccgcgcaagtcatttcactcgcTtgagggtggagaactcaatttctcggagggatctttcaaaagcctggtggttctcaagctccacttcggtgggagcaaatgcgtcAagtttcaacaaggagcattccacgatcttgagctactggtgctttctggttatattgaagaagtcggAactaagttctctgggctagaatttctcccaaGaatcaaggaagtccagctccatgattatttttatgacgtaaattaaacgagcaagccacacgaagattgaaggaggacttgctggcacagctttccgagaacccaaAGgaaccaatcctgaagactagcGggtgtttttag
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| CDS seq | atgtttggggagtggaggccAtttttcatttctgacaagatgaggttgttgcgtgtgctcgacttggaagacacagaaggtgtacgtaatcaccatattaagcaaataggggagcttcttcaccttagatacctttctctaagaggatgtatgcacattgcttacctgcctgattctttgggtaacctaagacaactggagacactagatgtcAGaggtatgcacatagacaggctgccaaagaccatcattaatcttcggaagctaaagtatctctgtgcaagtgtagacgaaaacacctatgaaggaatagcagaggaactaccagagctcaTtaggaacaggctatgcatttctactgttgcgttgctggggctttgtctgttctgctcagcaaGtgtaattgtaaagtttgatacagggattaatacccGtgacatctgctgcctgttttgctgcggtattctccctagcattgctatgcgCctccaagggaatggtgtagtagcaccaagagggctgaggagactgacagccctgcacacgctaggtgtggtggacatttcatggcagccatcaattttacaagatatcaagaggctcacccacctgcgcaaattggaaGtgaccggtgtcaacaAGaaaaacagcaaaaagtttttatctgcccttgccgctctcagccgcctggaatcattgtcactgatctcaaaggggaagctaggtctctGgggctgtctggatgctgaagAaaagttttcgccacctaaggatctcaagagtctgaagctacacggcaatctggttgagttgccaaaatggatcgggaagctcaacaatctcgtgaagctgaagctatcagaaatcGggctcaaggatcatgatgctgctatacaagtccttggtaagctacgaaacctgtccatccattgcctgccgcgcaagtcatttcactcgcTtgagggtggagaactcaatttctcggagggatctttcaaaagcctggtggttctcaagctccacttcggtgggagcaaatgcgtcAagtttcaacaaggagcattccacgatcttgagctactggtgctttctggttatattgaagaagtcggAactaagttctctgggctagaatttctcccaaGaatcaaggaagtccagctccatgattatttttatgaccaagccacacgaagattgaaggaggacttgctggcacagctttccgagaacccaaAGgaaccaatcctgaagactagcGggtgtttttag
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| Protein seq | MFGEWRPFFISDKMRLLRVLDLEDTEGVRNHHIKQIGELLHLRYLSLRGCMHIAYLPDSLGNLRQLETLDVRGMHIDRLPKTIINLRKLKYLCASVDENTYEGIAEELPELIRNRLCISTVALLGLCLFCSASVIVKFDTGINTRDICCLFCCGILPSIAMRLQGNGVVAPRGLRRLTALHTLGVVDISWQPSILQDIKRLTHLRKLEVTGVNKKNSKKFLSALAALSRLESLSLISKGKLGLWGCLDAEEKFSPPKDLKSLKLHGNLVELPKWIGKLNNLVKLKLSEIGLKDHDAAIQVLGKLRNLSIHCLPRKSFHSLEGGELNFSEGSFKSLVVLKLHFGGSKCVKFQQGAFHDLELLVLSGYIEEVGTKFSGLEFLPRIKEVQLHDYFYDQATRRLKEDLLAQLSENPKEPILKTSGCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0016910 | OsLiXu_12g0016910.01 | Chr12 | 22019554 | 22020839 | + | NAM | ||
| CDS seq | atgtttggggagtggaggccAtttttcatttctgacaagatgaggttgttgcgtgtgctcgacttggaagacacagaaggtgtacgtaatcaccatattaagcaaataggggagcttcttcaccttagatacctttctctaagaggatgtatgcacattgcttacctgcctgattctttgggtaacctaagacaactggagacactagatgtcAGaggtatgcacatagacaggctgccaaagaccatcattaatcttcggaagctaaagtatctctgtgcaagtgtagacgaaaacacctatgaaggaatagcagaggaactaccagagctcaTtaggaacaggctatgcatttctactgttgcgttgctggggctttgtctgttctgctcagcaaGtgtaattgtaaagtttgatacagggattaatacccGtgacatctgctgcctgttttgctgcggtattctccctagcattgctatgcgCctccaagggaatggtgtagtagcaccaagagggctgaggagactgacagccctgcacacgctaggtgtggtggacatttcatggcagccatcaattttacaagatatcaagaggctcacccacctgcgcaaattggaaGtgaccggtgtcaacaAGaaaaacagcaaaaagtttttatctgcccttgccgctctcagccgcctggaatcattgtcactgatctcaaaggggaagctaggtctctGgggctgtctggatgctgaagAaaagttttcgccacctaaggatctcaagagtctgaagctacacggcaatctggttgagttgccaaaatggatcgggaagctcaacaatctcgtgaagctgaagctatcagaaatcGggctcaaggatcatgatgctgctatacaagtccttggtaagctacgaaacctgtccatccattgcctgccgcgcaagtcatttcactcgcTtgagggtggagaactcaatttctcggagggatctttcaaaagcctggtggttctcaagctccacttcggtgggagcaaatgcgtcAagtttcaacaaggagcattccacgatcttgagctactggtgctttctggttatattgaagaagtcggAactaagttctctgggctagaatttctcccaaGaatcaaggaagtccagctccatgattatttttatgaccaagccacacgaagattgaaggaggacttgctggcacagctttccgagaacccaaAGgaaccaatcctgaagactagcGggtgtttttag
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| Protein seq | MFGEWRPFFISDKMRLLRVLDLEDTEGVRNHHIKQIGELLHLRYLSLRGCMHIAYLPDSLGNLRQLETLDVRGMHIDRLPKTIINLRKLKYLCASVDENTYEGIAEELPELIRNRLCISTVALLGLCLFCSASVIVKFDTGINTRDICCLFCCGILPSIAMRLQGNGVVAPRGLRRLTALHTLGVVDISWQPSILQDIKRLTHLRKLEVTGVNKKNSKKFLSALAALSRLESLSLISKGKLGLWGCLDAEEKFSPPKDLKSLKLHGNLVELPKWIGKLNNLVKLKLSEIGLKDHDAAIQVLGKLRNLSIHCLPRKSFHSLEGGELNFSEGSFKSLVVLKLHFGGSKCVKFQQGAFHDLELLVLSGYIEEVGTKFSGLEFLPRIKEVQLHDYFYDQATRRLKEDLLAQLSENPKEPILKTSGCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0559300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37270 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0559300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017170 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017290 | RBH | 0.0 | 0.207927 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016570 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0303200 | RBH | 0.2367025 | 0.3001685 | 0.0520705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016480 | RBH | 0.0 | 0.026773 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0335200 | RBH | 0.145592 | 0.0308775 | 0.0192875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016900 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017080 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016840 | SBH | 0.0 | 0.0 | 0.069130 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016500 | RBH | 0.0 | 0.748684 | 0.0 |
