Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0015930 | OGI:12056310 | 10/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:20674885-20686052 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgtgccccttctccatcccctatctgaccatcagcgacggagcgacgatagtgctctgccatgggcgtacggcggcgacggggttggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggtaatctgcatcgctccttctttcttccactcccttttttcttccatatatggagctggttctatttgctgctcctcctgcttagttcttgaggatttccagctcggtggtttccctcaccgcatcgtctcgtgtggtccgaccgttcctgctgtgctcgctctcgatttccccattgcagtgccgatgttgtgccagccatacttgtgctcactgtttttttcctgttttataccttccaggctgcgctctcggattggtgtctctcccacatcgcgtcttgctttGgggggagggaggggggcatctttgcctccctcagctacttctcgctaaggtatttagtataagatcacctggttttatcatggggatgcctgttcagttcagtacgtatgtgtggtgcttggtatatgggtaaactgagatgattatgtcactggatgtttgttcacttcatttcgcatatatggttcccctctgtttttttcattggattcctgattagctacgatttggcatatatttatgttatttcgtttttcatctttcctgccgtgtctcgctgtcgatttccccattgcgatgccgatgttgttccatccatgcgtgtgctcagtgtattttttttctctgccttccaggttgcgggctccaattggcgtctctcccacacatcgcatcttcttttggggggagggaggggggcatctttgccttcgtcagctacttctcgctaaggtatttaatacaagatcacattgttttatcactgggatggctattgagttcattacatatgtgtggagctgtggtatatggataaactgagatgattatgtcagcgaatacctgtttgcttgatttcgcatatatggtgctcctctgttttttcccttggattgctaattagctgtgctttggcatatatttacattatttcatttttgtattgtcctgttatgttatatattctttcgtaggttggtttttttatcgcttatgtgggatacatgtttagttcatttcacatatgcgatgctgcgatatgtataaactgagatgcttttgtctccagtatagctgttcggtggatttcatatatatggtgctcctcttttttccctccttcaattaccaattgctttgttttacattgttccgctatgatatatattcgctcctctttttttccctccttcaattaccgattactttgttttacattgttccgctgtgatatatattcttggctgtttttcgatcgcttgtgttgttgccagttgatttcgttcggcgtccatctgtttcttcctttgctggaccttatacagttatatgtttgggttagcctttcaatgtggttatgtctttggtgttttaccattttcgtaaacgcattttcaaatatttgtatgttccagtctaagcatccgagagctcctggttcagctcttgatgatttcccactttgttgctgttagatatgtcatattatgtccagttattcagtgcttgcttatatgcatctatctttcttccatatttctatagtagctcgtgcctctgttctttatgctttccctctccattatatattcatccatatgtttttctgaatgtgtctatattttgctcctttcgtttcttggtgtatagaaatgacatggagccatccagattcgttcgcatctgcccgcggaagcgtccagatggtacttggtgatgtcattatagtttcgtatgcaagcctcggagttagcaaggccattagcgatccttttttttccctgattcacacttttgctcaccaatagatgggtcctccatatcatctgctgccaataagcacttagagcttacgagtggtgtgtcatgtgccataggtatgtacgctcaatagtctgagagttagcgaggtcattaggataattgttgtttttttgtttcctgattcgcaattctgccttccgatagatgagccgtcatcatcccgcggtgccactgggttctcaatgctcacgggtagttcatcatgcactataggtatgtacgcttgctgtagtcgctgctgtctcaatgtttagtgtcatctcttatcccttgcacatctttttctcatatttttgtacagttgtccacttgctgtgatacgatatgctcaaaatgtatgttcatattgataagttcatctatttgctcattggttctttctagcttagctttgttttctctccgatccctcattctatctcctcgcatcacttccacagggagtcgtggagctggccacattcagtcttctcgacccaacagttacctctggactactatttgttgtgttgcttagcttgctaaggccttttcccttcttccgattgatttttttcctgtttaaatttttcataggagatcatttttgcccaatagtgccagcacgtgttgctcgagtgaaccgggaaaaaagacaggccgctaggaaaatgcgtcttattttgcgacaaggttcttgacctgcttatgtacatgatcctttctggtcgcttatggcgatgttctttctttcttttgtttccctttatttcttatttgctaattctcttcttccgttcttcttctatttgcatagaacatgtgccacgttcactgtcgatgagattcacatattccataccaaaggagcacatgcaaattcttaaaggtaatatcttagtaccagccttgctttgcttcgcctttgtcccttttttttttgcctctctatctatttctggacaaacatatgcatgcttctctacttataggtttccttttcgctcttatagctacgtacccagatcgttcctattatggtggccttgactatgaatgcaatcattgtggtgcattattttggtaccaagaaagggttgttagccagagctcgcacagagccaagaggattgcatacaatctgtgttgtcgtggtggaaagatctccttacccccacccaagccttttcctcctatcttacaagacttgattcgttttgatggcggtgcccgttccaactctttcatgcgactcatcaggcaatataattcattatttgcattcacatcgcttggggctaacattgataggagcataaacactggtcaggggcattatgtttttcgtatcaatggtgttgtccatcacagaattggttctctggttactgctcctggacaacgtccggaattcgcccagctgtacatatatgacaccgccaatgagctccagaataggcttaatattttttatcacactgatgatcctggggatgtccctgatcctgttattgtgcaagagcttatctcgatgcttgaccagttcaatcctcttgtgcaacagttccgtcttgctcgagacaagctgctttctccaagtgctcctgagattgctatcaagctcattgggtcagaccattctcagagtgaccattacagccttcccaccatctctgagttggcaacactaattatacctggtgcatcttgtgaggtatcaaagtttgatgtcattgtgcagaagcattcaggtgagttatgtcagttgtcacctattcatccagcccttatgtcattgcagtacccgcttctattcccatatggtgatgtgggttttcatactggtatcaagcttagagaggtagatgatcagccacccggtagttgcgacgaagcatcgatgcttgaattttatcggtacgagtcccactatcgaaaggatgagcccaatccattcacctgttgtggtaggctttctgatcagctcgctgcgaatgctttctcatgtatagagacatctcgactcacataccatgccctcaaccagAaaaaacttcgctctgagacacatcaaggtatatctgatgctgttgttaggggagacagtgatggaaaggatgttggcaccaaggtaattctgccatcaagtttcataggaggaaggcgatacatggttcaaaactaccatgattcaatggcaatctgccgttcttacggtcctcctcaaatattctcaactttcacctgcaattctaaatggccagagattattgaagctattcgttttgaggcagggcaaaaaccaagtgatagaagtgatatggtcacacatgtttaccatatgaagctagatgagtacatcacatctattaagaatggagaagccttcggtcccataaaagctggtgtgttacttgtcttattcatgatagctgtcctatctttacgtacatctccttcctaacacatctattgcttcccctaacacattatttgttcttttcttgttgctttgcttttcaattgtgtacactgttgagttccAaaaaagaggattgccgcattcccacacattaacatggctcacagctcaatctgaagaaccttcacctgcattcattgacaacctgatctgtgctgagataccagatataacagctgataggtttgggtttggtcttgttgatgaattcatgatacatggcccatgtggtgagcacaatccaagcagcccttgcatgaaggatggtcggtgttcaaagggctatccAaaatagttctgtgatgttactaccatagatgatgatggatatcctatttatcgacgacgcaatgatggtcgctatgtggtgaagaatggtgtttcactagataaccggtgggttgttccttataatccagctcttctgaagaaattccaagctcatatcaatgtggaatggtgcaataaaacataccttatcaagtacctttttaagtatataaataagggaagtgattcgactatgttcgttttcagccacaggacttcagaaaagacagaggctcatactgctagcgatggaggcataggtgaggttatgcaatacatcaaatccagatacctatcaacttgtgaattattctggagattatatggttttgagatccatggaaggagtccttctgttgaacgcctcattgtgcacttgccgaacatgcagtttgtgacataccatgatggagctgaccttgaagaggtcatagaagaccctgattcctctagaacaatgcttactgaatggtttgctaccaaccaacgtcacatctttgccagggatctcacctattgtgaatttcctaccaagtttagctgggatcctgagaagaaagtttggacaaagcgtaaaagaggaaccaagatagggagattaaagcacatccatccaagtactggggagccgttctaccttagaatgttgctcatgatagttcgaggatgtatgagttttgaagatattaggacatatgaaggtgtgttgtatggtacctatcgtgaagcctgtcaggcacgtggtctcattggtgatgacgctgaatgggatcacctctttgaggaggcagttatctgggctacttcataccagctcaggaaccttttcatgactgtactagcacactgtgatgtaggtgatgttagggttttgtttgataagtactggagatacatggtagatgattttgcttacaagttaaccaaagctcttggagtacaacgcacagctattccagaagttatgttgcaggataccttgctcaaagagttggatgccatgttctcaaataatggcttatcaatctcatcatacaatttgccaacaccagttgattgttcaggatccagtgcagcaaacaggcttatcttagaagagctttagctttaaccaacatagcctccatcaagaatctttgtccatgtatgccagcttgaacaatgaccagaagatgatatatgacaagatttttgacaggatagaccatcacgaaaagtgtattttttttatatctggacatggtggaacggggaagacattcttgtggaatgctattatggcaaacatgagatcaagaggtgaaattgttcttgcagttgcctcttctggggttgcagctctgctcatgcctggtggaaggactgctcattcacggtttcggatacctatagatatacatgaccggtcgatgtgtgctattcgtagagggacaatcctaggagatcttattaggaaagcatcactgattatatgggatgaggcgcctatgacacacaagctgtgctttgaggcattggatagaactctacgagatattcaatccgctgatgaaccagctaatgaatataagccttttggaggtaaacccattttacttggtggtgattttaggcaagtcttaccggtgattgagaaaggtacaagagctgatgtggtagatgcttcgctggttaggtctgcactatggaagcatgttgaagtcttacaccttaccactaacatgaggctacataatccatccctgtcgcagcaagccaagggtgaattggcagagtttgctaaataggttcttgacattggtgagggtcgtgctcccatgaacaaaagacaaggtgaggttgagaggacatggatagagatacctaaggagttgctgcttactccctgcggtgacaagattacagctataattgatgccgtgtacccggattttgaattgaactatgactacattccttacctttctcagcatgcaattgtctgtcctgtcaatacagttgttgatgagattaatgataagatgcttgctaaagtgcttggggatgcaaaggactatcttagcagcgacactatttcaaatacacttgaaaagcctgcagattttgatctattgtaccccatagaatttctaaactcaatatccataaacaatttcccgaaacatcgcatatccctcaaaattggttcagctgtagtcctgcttcgcaacattaaccaatcactcggcctttgcaatgggataagattgatggtcacccgactcggtgattatgttttcgagtccaaaatcatgactggcacaaatattggccagctggtctgtattccacggattgtcctaagtgggaacagtccaaagtggcctttcacgctccagcgaaggcagttcccaattaggctatgttatgcaatgacaataaacaaatgccaagggcaaactttggggaatgttggtgtatacctcagaaaccctgtcttcacacatggtcagctatatgtcactgttttgcgcgctacatcgaagcaaggcctcaagttgttgatagaggatgatgatggcaagccttgttccactacaggaacatcgtctacactgaaatattatcgttgctgtagattaatcttattgtcagtttgtcactgtgactgcagctaggatactttgctccttttgttcacctgtttcttctatgatcccatttctccgtgttactgtttgcttgtgtaacttaagcaagaactcatggtcatacagtgttctgtccacaatgactatccgtatttttggttttcgctatttgttactgctttctttttacccttcaatgagttgttgttcatacttgttttcttcctatttgaccagttgattgttgcagtgtcttccatatctgcttattaattgttctttcttatttttgcatattcttctcttggatgcaatcagttgcttttaaacatgcctgcttgaaacactgtcagttgggaaacagttcccacctcgaaaaaaaaaagatatatcctgcaccacagttccttcagcaattaggactttatatcttcatatcatgcaaggtattattattattattattatagtttccctctaacctatgtaatgccttctttatgtgttgtagatggattacactatgctaagggatgtgacacaggaatcacaccgttggcaggtccgagtgcgggtcactcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcaggtatagcaataagcacatggtcatgccttattttacctccatgctatttgtctcttacacatccaaacatcaacagggggacatgatggatgcgcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccctagtacaggcctgttgatcggatggtcatggcaaaattcactgcccacacaaccgttaaagaagacactgaggcaccatccacagtcccatctcatgcttacaaggttctttcttttgatgatattctttcaggtgactctgtttggtccagatcaatctatctcattccttattagctttgtctattccctgcttactgccctcacttactcatgtgcaaattttatcccttatactactcctgtagatgctataggtataatgacacccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagctgtgcttaatgtccacataaccaatggaaggtatgtatgcgttaatccactaattgttccagctgcttttgtattagatacaaaatgacttaattgtccgcacatgcattgtcagtttctttttacacatgtacaatccttcttttttgtttataatatcaacattgtttcacaactctcttatttgcaaatgtgaatactagcttaattcatgcacattattttccacctcttcattcttctatgtgcctacagcgaaactgctgtcattgcattgtggggtgcccatgatacacagttccacgctgaaaacttacagcagcaagcagaccatggacctgttgttatattgtttgttggattaactgttaaattccgagaccgtaagaaataaattcttaccctattatcacctctcctatttacatatttgcctgttcttgcttaaataatgtactctttcatgcttgccagaccagctagccctacaaggtagcactgtttgtaggtggtatcccaatgcaccaatccaggaaacaatttctctcataagcaggtatctctttcctgcactctttccattcacataaacatgcttcttctttgttcaacttatatcttccttagtttatctgttatatggatcaaccatatttccctagcctacaaaccaaaacactaatctgtttcatatttgaagcctccatggtaacccacgggtggtaagggcaatagagccgaacttcggtcagaaagaagctgtgcatgtaaaagtttctgatatctgtgaccttaatccccacgaagccttggtaatatagtgtacctccccacacctaatgattacattgcataatttccatccatgtgttatcagtgccatcctttacttcctctgtttctcgcatgtgaaccagggcaacagctatattgtcaagatagccatcaaggatttagtccctgctgaagcctggtggtaaatagcatgcaacacctgtaagagaggagcaggtagagatgggaacacatataaatgctcgaggtgcatcactaatgcaattgaaacaaggtactcttaccacctacacacgttcagctcttctcaattgttttacataataaaccattcagtatgctacaatttgagctatagaacataagacctacttctgctaccttatataataggtacagagtggctatcataggtgtcgacccatcagatttagcgaaccatgacgccaaaacagctgagtttactttctttggagaaattggctaccagttgattggcatccctgttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcaaaaatcaaagcagtttttgggaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctacccagccatgatgcttctatggcatcttctcagcatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccattggtgcttccagatccaaaggtataatctaatagcttcattctgcagcaatgtgtactctcttgcatataaacaattgtaaattcttatattaatattgcttatgcataggccacaactgatagccgtgatgatcatcatgggacaacaccgcctacttcagaggctagcactatattctgtacttagagcaaatatgtatgtctgtcccttatcaaacctaactgaccactaatgctttatcagctcctggctatggcacaactagacaaaaaacgtaaatcttctgcaattgatgaggatcttgctcaggaagggtaagtgacaatgcacagtttcatatttacgttccttgtttttttttctttgagttttctcatggctcaaacaaattgcatctgtagttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccacagCccccaaaatgtaagtaaacgttgttagccaactatatattacctgtgtgctcatttgttacagaaaaactgactctacattacattttgccctttaggacttgagggctccatataatatcaccccaccaaagcggtcttttgcacctggcatgccaaggcgtatactcctgtccctgatcaagcaagactaatgctcacatattttgcccaatgtattttgcagtgggaatataaataggggaTGtgttcttttgtgcaagccattagaccaaatgacattacttctacgtcttacaggcttgcgagccctagtggctagcagaacgataaatgaattcgtataaatagtatgtggtgtctgtacgatatgcacgttctaatcaaatatcgccagaacttatactcttataattggtgctatatctattcgctgcacactgtttcccaaagtcttcttatgtttgtgccggaaaaacacaatttcctactgtttcttatatatgcagcggctatagtcaaccatgtgttacc
More
|
||||||||||
| CDS seq | atggcaaaattcactgcccacacaaccgttaaagaagacactgaggcaccatccacagtcccatctcatgcttacaaggttctttcttttgatgatattctttcagatgctataggtataatgacacccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagctgtgcttaatgtccacataaccaatggaagcgaaactgctgtcattgcattgtggggtgcccatgatacacagttccacgctgaaaacttacagcagcaagcagaccatggacctgttgttatattgtttgttggattaactgttaaattccgagaccaccagctagccctacaaggtagcactgtttgtaggtggtatcccaatgcaccaatccaggaaacaatttctctcataagcagagtggctatcataggtgtcgacccatcagatttagcgaaccatgacgccaaaacagctgagtttactttctttggagaaattggctaccagttgattggcatccctgttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcaaaaatcaaagcagtttttgggaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctacccagccatgatgcttctatggcatcttctcagcatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccattggtgcttccagatccaaagctcctggctatggcacaactagacaaaaaacgtaaatcttctgcaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccacagCccccaaaatga
More
|
||||||||||
| Protein seq | MAKFTAHTTVKEDTEAPSTVPSHAYKVLSFDDILSDAIGIMTPIGPVQTVSCGGVMKAVLNVHITNGSETAVIALWGAHDTQFHAENLQQQADHGPVVILFVGLTVKFRDHQLALQGSTVCRWYPNAPIQETISLISRVAIIGVDPSDLANHDAKTAEFTFFGEIGYQLIGIPVLNLVASVQGARDIVPSKIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASMASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKLLAMAQLDKKRKSSAIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0015930 | OsLiXu_12g0015930.01 | Chr12 | 20674885 | 20686052 | + | NAM | ||
| CDS seq | atgggcgtacggcggcgacggggttggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggttgcgggctccaattggcgtctctcccacacatcgcatcttcttttggggggagggaggggggcatctttgccttcgtcagctacttctcgctaagaaatgacatggagccatccagattcgttcgcatctgcccgcggaagcgtccagatgatgggtcctccatatcatctgctgccaataagcacttagagcttacgagtggtgtgtcatgtgccatagatgagccgtcatcatcccgcggtgccactgggttctcaatgctcacgggtagttcatcatgcactataggagatcatttttgcccaatagtgccagcacgtgttgctcgaatggattacactatgctaagggatgtgacacaggaatcacaccgttggcaggtccgagtgcgggtcactcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagggggacatgatggatgcgcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccctag
More
|
|||||||
| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCGLQLASLPHIASSFGGREGGIFAFVSYFSLRNDMEPSRFVRICPRKRPDDGSSISSAANKHLELTSGVSCAIDEPSSSRGATGFSMLTGSSSCTIGDHFCPIVPARVARMDYTMLRDVTQESHRWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0015930 | OsLiXu_12g0015930.02 | Chr12 | 20674885 | 20686052 | + | NAM | ||
| CDS seq | atgggcgtacggcggcgacggggttggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggctgcgctctcggattggtgtctctcccacatcgcgtcttgctttGgggggagggaggggggcatctttgcctccctcagctacttctcgctaaggttgcgggctccaattggcaaatgacatggagccatccagattcgttcgcatctgcccgcggaagcgtccagatgatgagccgtcatcatcccgcggtgccactgggttctcaatgctcacggatggattacactatgctaagggatgtgacacaggaatcacaccgttggcaggtccgagtgcgggtcactcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagggggacatgatggatgcgcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccctag
More
|
|||||||
| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCALGLVSLPHRVLLWGEGGGHLCLPQLLLAKVAGSNWQMTWSHPDSFASARGSVQMMSRHHPAVPLGSQCSRMDYTMLRDVTQESHRWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARP |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0015930 | OsLiXu_12g0015930.03 | Chr12 | 20674885 | 20685755 | + | NAM | ||
| CDS seq | atgggaacacatataaatgctcgaggtgcatcactaatgcaattgaaacaaggtgtcgacccatcagatttagcgaaccatgacgccaaaacagctgagtttactttctttggagaaattggctaccagttgattggcatccctgttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcaaaaatcaaagcagtttttgggaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctacccagccatgatgcttctatggcatcttctcagcatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccattggtgcttccagatccaaagctcctggctatggcacaactagacaaaaaacgtaaatcttctgcaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccacagCccccaaaattgggaatataa
More
|
|||||||
| Protein seq | MGTHINARGASLMQLKQGVDPSDLANHDAKTAEFTFFGEIGYQLIGIPVLNLVASVQGARDIVPSKIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASMASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKLLAMAQLDKKRKSSAIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPKLGI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0015930 | OsLiXu_12g0015930.05 | Chr12 | 20683148 | 20684415 | + | NAM | ||
| CDS seq | atggcaaaattcactgcccacacaaccgttaaagaagacactgaggcaccatccacagtcccatctcatgcttacaaggttctttcttttgatgatattctttcaggtataatgacacccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagctgtgcttaatgtccacataaccaatggaagcgaaactgctgtcattgcattgtggggtgcccatgatacacagttccacgctgaaaacttacagcagcaagcagaccatggacctgttgttatattgtttgttggattaactgttaaattccgagaccaccagctagccctacaaggtagcactgtttgtaggtggtatcccaatgcaccaatccaggaaacaatttctctcataagcagcctccatggtaacccacgggtggtaagggcaatagagccgaacttcggtcagaaagaagctgtgcatgtaaaagtttctgatatctgtgaccttaatccccacgaagccttgggcaacagctatattgtcaagatagccatcaaggatttagtccctgctgaagcctggtggtaa
More
|
|||||||
| Protein seq | MAKFTAHTTVKEDTEAPSTVPSHAYKVLSFDDILSGIMTPIGPVQTVSCGGVMKAVLNVHITNGSETAVIALWGAHDTQFHAENLQQQADHGPVVILFVGLTVKFRDHQLALQGSTVCRWYPNAPIQETISLISSLHGNPRVVRAIEPNFGQKEAVHVKVSDICDLNPHEALGNSYIVKIAIKDLVPAEAWW |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0015930 | OsLiXu_12g0015930.04 | Chr12 | 20683148 | 20686052 | + | NAM | ||
| CDS seq | atggcaaaattcactgcccacacaaccgttaaagaagacactgaggcaccatccacagtcccatctcatgcttacaaggttctttcttttgatgatattctttcagatgctataggtataatgacacccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagctgtgcttaatgtccacataaccaatggaagcgaaactgctgtcattgcattgtggggtgcccatgatacacagttccacgctgaaaacttacagcagcaagcagaccatggacctgttgttatattgtttgttggattaactgttaaattccgagaccaccagctagccctacaaggtagcactgtttgtaggtggtatcccaatgcaccaatccaggaaacaatttctctcataagcagagtggctatcataggtgtcgacccatcagatttagcgaaccatgacgccaaaacagctgagtttactttctttggagaaattggctaccagttgattggcatccctgttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcaaaaatcaaagcagtttttgggaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctacccagccatgatgcttctatggcatcttctcagcatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccattggtgcttccagatccaaagctcctggctatggcacaactagacaaaaaacgtaaatcttctgcaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccacagCccccaaaatga
More
|
|||||||
| Protein seq | MAKFTAHTTVKEDTEAPSTVPSHAYKVLSFDDILSDAIGIMTPIGPVQTVSCGGVMKAVLNVHITNGSETAVIALWGAHDTQFHAENLQQQADHGPVVILFVGLTVKFRDHQLALQGSTVCRWYPNAPIQETISLISRVAIIGVDPSDLANHDAKTAEFTFFGEIGYQLIGIPVLNLVASVQGARDIVPSKIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASMASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKLLAMAQLDKKRKSSAIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 20684504 | 20684644 | + | OsLiXu_12g0015930.01,OsLiXu_12g0015930.02 | OsLiXu_12g0015930.02,OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| A3 | Chr12 | 20685528 | 20685745 | + | OsLiXu_12g0015930.01,OsLiXu_12g0015930.02,OsLiXu_12g0015930.04 | OsLiXu_12g0015930.03,OsLiXu_12g0015930.02,OsLiXu_12g0015930.01,OsLiXu_12g0015930.04 | All |
| A3 | Chr12 | 20683253 | 20683378 | + | OsLiXu_12g0015930.04 | OsLiXu_12g0015930.05,OsLiXu_12g0015930.04 | All |
| RI | Chr12 | 20675666 | 20675762 | + | OsLiXu_12g0015930.01 | OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| SE | Chr12 | 20675021 | 20675666 | + | OsLiXu_12g0015930.03,OsLiXu_12g0015930.02 | OsLiXu_12g0015930.02,OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| SE | Chr12 | 20676736 | 20676999 | + | OsLiXu_12g0015930.03,OsLiXu_12g0015930.01 | OsLiXu_12g0015930.02,OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| SE | Chr12 | 20677067 | 20677431 | + | OsLiXu_12g0015930.03 | OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| SE | Chr12 | 20685059 | 20685285 | + | OsLiXu_12g0015930.01,OsLiXu_12g0015930.02 | OsLiXu_12g0015930.04,OsLiXu_12g0015930.02,OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| A5 | Chr12 | 20683253 | 20683378 | + | OsLiXu_12g0015930.03,OsLiXu_12g0015930.01,OsLiXu_12g0015930.02 | OsLiXu_12g0015930.02,OsLiXu_12g0015930.05,OsLiXu_12g0015930.01,OsLiXu_12g0015930.03 | All |
| A5 | Chr12 | 20675684 | 20676681 | + | OsLiXu_12g0015930.01 | OsLiXu_12g0015930.02,OsLiXu_12g0015930.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0539751 | RBH | 2.420098 | 4.627917 | 1.397641 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35465 | RBH | 1.780341 | 1.909281 | 0.326165 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0539751 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016160 | RBH | 0.428559 | 4.151579 | 4.127630 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016280 | RBH | 1.163988 | 0.810781 | 3.282471 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016640 | RBH | 1.991272 | 1.458120 | 9.063923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015460 | RBH | 11.675835 | 1.124360 | 17.807034 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0283800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038760 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0316300 | RBH | 0 | 0.0888635 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039110 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016150 | RBH | 0.047473 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
