Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0014520 | OGI:12052310 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:19138666-19140544 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttctcgcttctctccgccgccgccaccctcccacacgcgcgcgcctctctagggtttcccacctctcaccggcggcggcggaaggcgaaggcggcggcggcggcggcgaagatggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctggtatggctgctgctccccctcctccccaccttctccgacgtcgtcggcctcggatcgaggcgttacctgggttgggttttggtggtgatttcttggtgcttagctcgtcgcgattagtgtgatttgggtttggttgtgacgcttcgttgatgaaatcatttcaccgccatgcttaagatctagttcggttacatgagtaggatttctcaggaatggactgttcagttagaggactagcaaattagtactaagaagtagacttttctaccttattttgattgtgtagcttcgtctgcagtagcatatcagaattagagtacttcttgtatgattcctgggataaaaattggtgttcggtatgtgtgtgacctgtaaatgcttttgatataatgaatggattttcttgtagaaaagctgatatcgtaggctgtttgttgttcattaatcacacttttcttctgtagttgatatgttaattgcagtcatggaagattagccctttgggtgtatgtatgtattgatcccacattttctttgatgtgtttggtagccgggtgtgcgggaaccctcatggactgatcaggaagtacgggctcatgtgctgcagacagtgcttccgcagcaacgccaaggacatcggcttcatcaaggtatgctctattatgaacttccgctgttccgtgaaatagtgagatcctcattggttctgtttgctgcttctgcgttgacattggttatgtagtaatggacctgctgctgcatcactactgcctgttgctaaaccagatagttactctgttctcctatctagatgattttgtgcaatgttctcctaactaagatgattttgcgtgaatgtttatctggatacgtggttgatgtatgtttgtgggatgcctctaccaatttttatgtactctttcagttgaatgatgagatgatgttatgatatgcttgcttgcttcttgaaaaaattcatcctatgaattgatgtcctgctcatttactttatgcctcatcttttcttgtgtaattcagcattgtaatgtaattgattcttgaagagttgtgttcttgttaacgttaccatttaggtgtgatcttggttgttatatgatgctgtacatttctgtttgaaaatggcccacttgtagaataaaagcttttctgtgcatatctttgaaaaatctgatcatttagttaggcttatcagtatgttttggcttctttcttgcttcatggtagtctttcttgctgcaagatagtatacaagctaatgatcactattattttgttgcagtaccgctaaagtcatcttggtttcctcagccctactgctgggtgaagagatggagcatttaatggaaggcttaatttcagttccagtaatttagctgtttgtttggtactctgcagactaaagtggtttatgtttctgatgctatttgaatgatgtggatgctaagtatgaattaatcgcgcatcaaaaaaaatcctttaatactattatatatgtgctcctgtgagggatcgtatgattttttgctgttgaatggagatgttcaggttagcagtcagctgctgcattttggacaggcacattttcagtttggtggtttaaacgcagttttagcagttaaattgtgcatcttgtagttgtgctgatcaatcttatgatctctacttaatatctggatcaagttaat
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| CDS seq | atggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctgccgggtgtgcgggaaccctcatggactgatcaggaagtacgggctcatgtgctgcagacagtgcttccgcagcaacgccaaggacatcggcttcatcaagaataaaagcttttctgtgcatatctttgaaaaatctgatcatttagttaggcttatcataccgctaaagtcatcttggtttcctcagccctactgctgggtgaagagatggagcatttaa |
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKNKSFSVHIFEKSDHLVRLIIPLKSSWFPQPYCWVKRWSI |
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| Function | 40S ribosomal protein S29 [UniProtKB/Swiss-Prot:Q5I7K3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0014520 | OsLiXu_12g0014520.01 | Chr12 | 19138666 | 19140544 | + | NAM | ||
| CDS seq | atggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctgccgggtgtgcgggaaccctcatggactgatcaggaagtacgggctcatgtgctgcagacagtgcttccgcagcaacgccaaggacatcggcttcatcaagaataaaagcttttctgtgcatatctttgaaaaatctgatcatttagttaggcttatcataccgctaaagtcatcttggtttcctcagccctactgctgggtgaagagatggagcatttaa
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKNKSFSVHIFEKSDHLVRLIIPLKSSWFPQPYCWVKRWSI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0014520 | OsLiXu_12g0014520.02 | Chr12 | 19138690 | 19140345 | + | IsoSeq | ||
| CDS seq | atggagcatttaatggaaggcttaatttcagttccagta |
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| Protein seq | MEHLMEGLISVPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr12 | 19139488 | 19140139 | + | OsLiXu_12g0014520.01 | OsLiXu_12g0014520.01,OsLiXu_12g0014520.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.874785 | 0.0 | 11.237624 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0508300 | RBH | 13.615824 | 13.876288 | 40.326180 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32380 | RBH | 3.118449 | 2.827000 | 3.261263 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0508300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014700 | RBH | 4.989951 | 118.093529 | 45.777992 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014870 | RBH | 0.781932 | 52.803940 | 15.272164 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014760 | RBH | 12.105694 | 165.275894 | 37.073933 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014560 | RBH | 1.267466 | 11.774669 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014100 | RBH | 45.002563 | 293.281830 | 102.345131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0262200 | RBH | 21.2368745 | 25.610524 | 30.8230505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014300 | RBH | 1.656178 | 17.275496 | 7.234943 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0289500 | RBH | 28.078324 | 22.33397 | 68.87891 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014450 | RBH | 0.564554 | 3.099313 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014630 | RBH | 3.109046 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014610 | RBH | 10.900606 | 260.279083 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020840 | RBH | 5.189041 | 0.0 | 5.537289 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014670 | RBH | 2.162624 | 91.322159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014530 | RBH | 2.669056 | 105.476326 | 22.532772 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014310 | RBH | 5.631531 | 206.384262 | 69.223175 |
