Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0013980 | OGI:12051290 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:18652346-18655063 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaccagcattcaacttcaacgcgctcgagaaatgcctggtcgccggtaatcccatccgtgaatcctcctggcatcttttctgcatgcaagtgcttgagcaaccgaagaaattcaagacctttcggcacagctttcaaattcttcagcgcacggagttccagataggccaagttcatcatggcgccattgcttatctctagtgaattcaagttttgcagcctaatcaGGTagagttgcctgagttttGggaaccatccatcctggaacaccagtgcttCcccaccatatgcctcacaaagctcaaggtaaaccaggcttggcatttgcgacaaggagccgagaggatcttgcgtgagcccagaccagcgcatcgacaagaccttgaggttctgaaaatggccagaaacagggaagatcacaccttctgctaatctgccatacaagtagaacttctgcagatatcttggagctctgaatttttccaaactgaggacttcgttcatgccatgtgttgaaaccgccaatctggtaagtttggtcatctttctgatggaagtccaaagatcctttgcgtgactccttgacaccTtagtaatactcaatgttcgaagctgtgtaagatgccccagattttcgacaagattcttgctggctttgacatctcggagagtctgcaaacacttcagaacactgatattccccggaattgatgcgccatataagcctttactcacaattaggtgacggaggcttgtgagaagagctatttcatatggcagcttatttacatacgtatccctgagatgaagtgtttgcaagttcttaagccttgccacagatttgggtatcttgttcacttttgtacatgacaaatcaagataatgcaaattgaacagactagcaatggcattcgggaaatctttgagcagggagtatctgaggcacaggacccttaataatctgaaacttgatacagaggtaaaaatccatggaactggcacgtatcgatcaaataatagaaatgatcgcagctgctgccaagctaaacctgattgaaagtcttggcctccagtgtgcacggagacacggcgtgctgcatcaccgaggcttgttacgtctggatgctcgcatatgagagaaaatagttgttttcttgatgttgttcggataatttctttcaccatgttatgcaattcaaattttcttgcccttacaaatacattcctttcaacaacttcaatcagtgagcgctgagtaagctctctcaggtactcttccgccacttcctttggtgttgtgtctgttcctcggtcttcaacaaaaccttcagctatccacattctgattatccacttacgtctaatttgggaatcttctgggaataatccacagtaaaggaagcagttcctcaaatgatttgggagatcatttaaactcaaatgtataacatctgagacccagctgagctctggattacttgtaacttgccaaTtaagTtgatcatagaatgatgcccattcttgttcatccatgcctctacatgacagaaggctcccaatagctccaatagccagaggcaaattttggcactttgccagaattctatccgcctgagttttgagacttgcaggacAttccgcctcagtgagctttgagaatgcctttttgcagaagagcttccacgagtcatcaggtgaaagaaagccaattctaatactgttattgccttgcgctaacaatgctgtgccttcaattcaagtggtaatgataactctacttccgaatacattatttgggaatgcgcgatcaaataataaccaagaatctttatcccacatgttgtctagaacaataaggtacttcttgtccatgagataactgcggatcttccccaccatgacattatgatcatcagtagcatgacccattgatttgctatccagttgattcagaattttacttaaaagattttcaatctgataattttgtgacacagaaacccatgcatgacacttgaagttatttaggatatcatgcctcctccagatgctacttgcaagtgtggttttacctgatcctcccatgcccaagatagagataatagcacgatccacactgttatcatttaggcaatcgatcaacttttgtgcatatccttgttgccccacaattgcatcatcatcatcatcatcatcatcatcgatattaaagtaggatgaatctgacaggtatatttggcgatttatattattgctcagagttttttgaccattgtcagatatcttgatgccatatctctctctcataactgtcatgtgctgaaggcgaatcttcactaactgaagctgagaagaaacattatgccatgttgtcctgttctttgagtgacagaatgtcttcttcaggaaactttctgtgccacccatcttcccaaggagaaatgcatattcatcaataatatcctcaacttcaaaggcaatctttcttacaagttttagccaagatacaaaaatttggttatttctatcctgtagctgcacttgacttatgtatgcttgcattatttcaaattcactctcgatttctttcatactgttttccacttgaaacAaaatgataatttctttgcccaaccgcgatttgattccattgagtgcagcttttcccagggtggtagcaattttggaaagtaacactaatataagagcctctgccat
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| CDS seq | atggcagaggctcttatattagtgttactttccaaaattgctaccaccctgggaaaagctgcactcaatggaatcaaatcgcggttgggcaaagaaattatcatttTgtttcaagtggaaaacagtatgaaagaaatcgagagtgaatttgaaataatgcaagcatacataagtcaagtgcagctacaggatagaaataaccaaatttttgtatcttggctaaaacttgtaagaaagattgcctttgaagttgaggatattattgatgaatatgcatttctccttgggaagatgggtggcacagaaagtttcctgaagaagacattctgtcactcaaagaacaggacaacatggcataatgtttcttctcagcttcagttagtgaagattcgccttcagcacatgacagttatgagagagagatatggcatcaagatatctgacaatggtcaaaaaactctgagcaataatataaatcgccaaatatacctgtcagattcatcctactttaatatcgatgatgatgatgatgatgatgatgatgcaattgtggggcaacaaggatatgcacaaaagttgatcgattgcctaaatgataacagtgtggatcgtgctattatctctatcttgggcatgggaggatcaggtaaaaccacacttgcaagtagcatctggaggaggcatgatatcctaaataacttcaagtgtcatgcatgggtttctgtgtcacaaaattatcagattgaaaatcttttaagtaaaattctgaatcaactggatagcaaatcaatgggtcatgctactgatgatcataatgtcatggtggggaagatccgcagttatctcatggacaagaagtaccttattgttctagacaacatgtgggataaagattcttggttattatttgatcgcgcattcccaaataatgtattcggaagcacagcattgttagcgcaaggcaataacagtattagaattggctttctttcacctgatgactcgtggaagctcttctgcaaaaaggcattctcaaagctcactgaggcggaaTgtcctgcaagtctcaaaactcaggcggatagaattctggcaaagtgccaaaatttgcctctggctattggagctattgggagccttctgtcatgtagaggcatggatgaacaagaatgggcatcattctatgatcaActtaAttggcaagttacaagtaatccagagctcagctgggtctcagatgttatacatttgagtttaaatgatctcccaaatcatttgaggaactgcttcctttactgtggattattcccagaagattcccaaattagacgtaagtggataatcagaatgtggatagctgaaggttttgttgaagaccgaggaacagacacaacaccaaaggaagtggcggaagagtacctgagagagcttactcagcgctcactgattgaagttgttgaaaggaatgtatttgtaagggcaagaaaatttgaattgcataacatggtgaaagaaattatccgaacaacatcaagaaaacaactattttctctcatatgcgagcatccagacgtaacaagcctcggtgatgcagcacgccgtgtctccgtgcacactggaggccaagactttcaatcaggtttagcttggcagcagctgcgatcatttctattatttgatcgatacgtgccagttccatggatttttacctctgtatcaagtttcagattattaagggtcctgtgcctcagatactccctgctcaaagatttcccgaatgccattgctagtctgttcaatttgcattatcttgatttgtcatgtacaaaagtgaacaagatacccaaatctgtggcaaggcttaagaacttgcaaacacttcatctcagggatacgtatgtaaataagctgccatatgaaatagctcttctcacaagcctccgtcacctaattgtgagtaaaggcttatatggcgcatcaattccggggaatatcagtgttctgaagtgtttgcagactctccgagatgtcaaagccagcaagaatcttgtcgaaaatctggggcatcttacacagcttcgaacattgagtattactaAggtgtcaaggagtcacgcaaaggatctttggacttccatcagaaagatgaccaaacttaccagattggcggtttcaacacatggcatgaacgaagtcctcagtttggaaaaattcagagctccaagatatctgcagaagttctacttgtatggcagattagcagaaggtgtgatcttccctgtttctggccattttcagaacctcaaggtcttgtcgatgcgctggtctgggctcacgcaagatcctctcggctccttgtcgcaaatgccaagcctggtttaccttgagctttgtgaggcatatggtgggGaagcactggtgttccaggatggatggttccCaaaactcaggcaactctACCtgattaggctgcaaaacttgaattcactagagataagcaatggcgccatgatgaacttggcctatctggaactccgtgcgctgaagaatttgaaagctgtgccgaaaggtcttgaatttcttcggttgctcaagcacttgcatgcagaaaagatgccaggaggattcacggatgggattaccggcgaccaggcatttctcgagcgcgttgaagttgaatgctggtaa
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| Protein seq | MAEALILVLLSKIATTLGKAALNGIKSRLGKEIIILFQVENSMKEIESEFEIMQAYISQVQLQDRNNQIFVSWLKLVRKIAFEVEDIIDEYAFLLGKMGGTESFLKKTFCHSKNRTTWHNVSSQLQLVKIRLQHMTVMRERYGIKISDNGQKTLSNNINRQIYLSDSSYFNIDDDDDDDDDAIVGQQGYAQKLIDCLNDNSVDRAIISILGMGGSGKTTLASSIWRRHDILNNFKCHAWVSVSQNYQIENLLSKILNQLDSKSMGHATDDHNVMVGKIRSYLMDKKYLIVLDNMWDKDSWLLFDRAFPNNVFGSTALLAQGNNSIRIGFLSPDDSWKLFCKKAFSKLTEAECPASLKTQADRILAKCQNLPLAIGAIGSLLSCRGMDEQEWASFYDQLNWQVTSNPELSWVSDVIHLSLNDLPNHLRNCFLYCGLFPEDSQIRRKWIIRMWIAEGFVEDRGTDTTPKEVAEEYLRELTQRSLIEVVERNVFVRARKFELHNMVKEIIRTTSRKQLFSLICEHPDVTSLGDAARRVSVHTGGQDFQSGLAWQQLRSFLLFDRYVPVPWIFTSVSSFRLLRVLCLRYSLLKDFPNAIASLFNLHYLDLSCTKVNKIPKSVARLKNLQTLHLRDTYVNKLPYEIALLTSLRHLIVSKGLYGASIPGNISVLKCLQTLRDVKASKNLVENLGHLTQLRTLSITKVSRSHAKDLWTSIRKMTKLTRLAVSTHGMNEVLSLEKFRAPRYLQKFYLYGRLAEGVIFPVSGHFQNLKVLSMRWSGLTQDPLGSLSQMPSLVYLELCEAYGGEALVFQDGWFPKLRQLYLIRLQNLNSLEISNGAMMNLAYLELRALKNLKAVPKGLEFLRLLKHLHAEKMPGGFTDGITGDQAFLERVEVECW |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0013980 | OsLiXu_12g0013980.01 | Chr12 | 18652346 | 18655063 | - | NAM | ||
| CDS seq | atggcagaggctcttatattagtgttactttccaaaattgctaccaccctgggaaaagctgcactcaatggaatcaaatcgcggttgggcaaagaaattatcatttTgtttcaagtggaaaacagtatgaaagaaatcgagagtgaatttgaaataatgcaagcatacataagtcaagtgcagctacaggatagaaataaccaaatttttgtatcttggctaaaacttgtaagaaagattgcctttgaagttgaggatattattgatgaatatgcatttctccttgggaagatgggtggcacagaaagtttcctgaagaagacattctgtcactcaaagaacaggacaacatggcataatgtttcttctcagcttcagttagtgaagattcgccttcagcacatgacagttatgagagagagatatggcatcaagatatctgacaatggtcaaaaaactctgagcaataatataaatcgccaaatatacctgtcagattcatcctactttaatatcgatgatgatgatgatgatgatgatgatgcaattgtggggcaacaaggatatgcacaaaagttgatcgattgcctaaatgataacagtgtggatcgtgctattatctctatcttgggcatgggaggatcaggtaaaaccacacttgcaagtagcatctggaggaggcatgatatcctaaataacttcaagtgtcatgcatgggtttctgtgtcacaaaattatcagattgaaaatcttttaagtaaaattctgaatcaactggatagcaaatcaatgggtcatgctactgatgatcataatgtcatggtggggaagatccgcagttatctcatggacaagaagtaccttattgttctagacaacatgtgggataaagattcttggttattatttgatcgcgcattcccaaataatgtattcggaagcacagcattgttagcgcaaggcaataacagtattagaattggctttctttcacctgatgactcgtggaagctcttctgcaaaaaggcattctcaaagctcactgaggcggaaTgtcctgcaagtctcaaaactcaggcggatagaattctggcaaagtgccaaaatttgcctctggctattggagctattgggagccttctgtcatgtagaggcatggatgaacaagaatgggcatcattctatgatcaActtaAttggcaagttacaagtaatccagagctcagctgggtctcagatgttatacatttgagtttaaatgatctcccaaatcatttgaggaactgcttcctttactgtggattattcccagaagattcccaaattagacgtaagtggataatcagaatgtggatagctgaaggttttgttgaagaccgaggaacagacacaacaccaaaggaagtggcggaagagtacctgagagagcttactcagcgctcactgattgaagttgttgaaaggaatgtatttgtaagggcaagaaaatttgaattgcataacatggtgaaagaaattatccgaacaacatcaagaaaacaactattttctctcatatgcgagcatccagacgtaacaagcctcggtgatgcagcacgccgtgtctccgtgcacactggaggccaagactttcaatcaggtttagcttggcagcagctgcgatcatttctattatttgatcgatacgtgccagttccatggatttttacctctgtatcaagtttcagattattaagggtcctgtgcctcagatactccctgctcaaagatttcccgaatgccattgctagtctgttcaatttgcattatcttgatttgtcatgtacaaaagtgaacaagatacccaaatctgtggcaaggcttaagaacttgcaaacacttcatctcagggatacgtatgtaaataagctgccatatgaaatagctcttctcacaagcctccgtcacctaattgtgagtaaaggcttatatggcgcatcaattccggggaatatcagtgttctgaagtgtttgcagactctccgagatgtcaaagccagcaagaatcttgtcgaaaatctggggcatcttacacagcttcgaacattgagtattactaAggtgtcaaggagtcacgcaaaggatctttggacttccatcagaaagatgaccaaacttaccagattggcggtttcaacacatggcatgaacgaagtcctcagtttggaaaaattcagagctccaagatatctgcagaagttctacttgtatggcagattagcagaaggtgtgatcttccctgtttctggccattttcagaacctcaaggtcttgtcgatgcgctggtctgggctcacgcaagatcctctcggctccttgtcgcaaatgccaagcctggtttaccttgagctttgtgaggcatatggtgggGaagcactggtgttccaggatggatggttccCaaaactcaggcaactctACCtgattaggctgcaaaacttgaattcactagagataagcaatggcgccatgatgaacttggcctatctggaactccgtgcgctgaagaatttgaaagctgtgccgaaaggtcttgaatttcttcggttgctcaagcacttgcatgcagaaaagatgccaggaggattcacggatgggattaccggcgaccaggcatttctcgagcgcgttgaagttgaatgctggtaa
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| Protein seq | MAEALILVLLSKIATTLGKAALNGIKSRLGKEIIILFQVENSMKEIESEFEIMQAYISQVQLQDRNNQIFVSWLKLVRKIAFEVEDIIDEYAFLLGKMGGTESFLKKTFCHSKNRTTWHNVSSQLQLVKIRLQHMTVMRERYGIKISDNGQKTLSNNINRQIYLSDSSYFNIDDDDDDDDDAIVGQQGYAQKLIDCLNDNSVDRAIISILGMGGSGKTTLASSIWRRHDILNNFKCHAWVSVSQNYQIENLLSKILNQLDSKSMGHATDDHNVMVGKIRSYLMDKKYLIVLDNMWDKDSWLLFDRAFPNNVFGSTALLAQGNNSIRIGFLSPDDSWKLFCKKAFSKLTEAECPASLKTQADRILAKCQNLPLAIGAIGSLLSCRGMDEQEWASFYDQLNWQVTSNPELSWVSDVIHLSLNDLPNHLRNCFLYCGLFPEDSQIRRKWIIRMWIAEGFVEDRGTDTTPKEVAEEYLRELTQRSLIEVVERNVFVRARKFELHNMVKEIIRTTSRKQLFSLICEHPDVTSLGDAARRVSVHTGGQDFQSGLAWQQLRSFLLFDRYVPVPWIFTSVSSFRLLRVLCLRYSLLKDFPNAIASLFNLHYLDLSCTKVNKIPKSVARLKNLQTLHLRDTYVNKLPYEIALLTSLRHLIVSKGLYGASIPGNISVLKCLQTLRDVKASKNLVENLGHLTQLRTLSITKVSRSHAKDLWTSIRKMTKLTRLAVSTHGMNEVLSLEKFRAPRYLQKFYLYGRLAEGVIFPVSGHFQNLKVLSMRWSGLTQDPLGSLSQMPSLVYLELCEAYGGEALVFQDGWFPKLRQLYLIRLQNLNSLEISNGAMMNLAYLELRALKNLKAVPKGLEFLRLLKHLHAEKMPGGFTDGITGDQAFLERVEVECW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.166019 | 0.0 | 0.424618 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0500500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0500500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014140 | RBH | 0.138064 | 0.760304 | 0.737451 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014310 | RBH | 0.000000 | 0.000000 | 0.683394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014200 | RBH | 0.320572 | 2.539342 | 1.735354 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014010 | RBH | 0.062905 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013630 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0257300 | RBH | 0.004694 | 3.4090505 | 0.0447675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013800 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0281500 | RBH | 0.005609 | 3.16952 | 0.044057 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013900 | RBH | 0.0 | 0.186066 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014070 | RBH | 0.0 | 4.838511 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014180 | RBH | 0.0 | 1.590352 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013810 | RBH | 0.0 | 1.865107 | 0.0 |
