Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0010780 | OGI:12035530 | 8/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:12624358-12634022 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgttggtctttgagttttgatcttgcaaaatacttcctctggtaaattagaacaaaacagagtttagagagaaaataagtagacatgtattgggcagcaaaaataaacatccccacaaaaaagttgttctttgaaatgttatatatcaaaaaaaattggctggatctgaattttgtttcagtgtggtttggaatctgagtaaataatctattgctttgatcttattttcttgttcagtggttctgaagacataacgcaaactctgaatttgtatctgcaaactctgaatttggcactacaatggagaaaaaaagcaatatacaaatatcatgaagtactatggattaaaagtacaaacaacatttacattttactatttcagtttcaaccaaaaagcatagacaaatgtgacaaaagttcaagacttgtacaatgcacacaggagctctgaatatacaacaaaaacaaagacagtgtagttcaattctaattcaggtactataacatgacaaaaacaacacctaagatactctattggcctaaagacaaaatgatgactattggcctaaaagacaaactaaacacttagattaacaacactaggaaaaattctattcctaggcctagaatatctttacctagtcctcaggtagatgtgaatattttttgtgaaaataactacttttgataacatgtgaaatagaagtgatttctagtctccagctaaattatgggcaaagcatgttcaacaactaactctggacatcctatctaatacacttatattatgtttaaaacaactgcagtggcatttgatctagtaatatgctggacaaagaaagacaatattgtgatcatatataggacacatgtttggactgatacaaacataagaaagcataaatcaaaaggttctagaaaaccagattaatgaaataaactagtatctcaagagctacaagtctaagtgaaaatccgaggcattatcaacctactctaactaaatacaaactgacatgctaaaatgtagaagtactaacaagattaattcaataataaagaacacaactcgctaaagcaaaatgctcaagacaaaaaagaaacaaaaatttgattcgttagtttcaaaattacaatgcactttctatgtagttcatttctaatgtactttgaatgtttgtactatggtttaaaagaaaaaaacacaatttcctttgattgtttcggtttcaaccAaaaagaaacaggatttgagtgaacatagaggaattgtagaaggaaaaaagaaggaagacatcagtggagtgaatgcatgggaatcaagaacaagtaaatcaagatctgttttacaaaattaaattcaaattacagtgaaaaacactgtatcaaaacttaaaaactgaaactagacttataaatttcaattttcaattattggaatgtttcaattagaaaaaatgttggatctgaaattagaaaaaatgttagatttgaaaacactgaatgttgcactatactgcactactctgaatattgtgcTATGtagtcAtaatacaaacaagattttgcttcagtcctttcagattcaaccAaaaaaacatgaactgactaaaattacaaattacagtcaatttgtgtaagaattacatagaatctgcactgtaatttgagaacttgaaacatgtaactggaatcaaatgatcaaaaatttctgttcacttgtaattatcattactatctatattaaatacaatttctggtattgttttagtattgaaatgattcaaaaatgaatttagaagtactaaattgatctgtttaataatttcaatacaatttacaatcaatttgtataagaattacatagaaaaaaaactgtaaatttagtattaaaaacatgtaaatgaaaatttatgtgattactactactttaatttcttttttcaagttaaatgtaattgtccataaacaatttcctttgattgtttcagttgcaacaaaagagaaacatgatatgagtgaagttacagaaaaaaaaagaaggaaagcatgagtggagtgaacacacaggaatcaagaataggtaaattttgatctgtcttataaaattcaattaaaattgctttgaatttgaaatatcattacattaaaaaaaccctgtcatttcagaacttaaaaaatataattgagaacaattgttaagaaaattgatgtttgcttctaataatcaatactatctttcaaaattatcactattgtcctaaagacaaacatcaatttgaaatgtttaATaatttcattacaatttacagtcaatttgtataagaattacatagAaaaaaaatgtaattttagtatttaaaaaatgtaacattaatatattAaaaaatgtaacattaatatatcaagaggttccaaatcagttgaaaCatatcaatacttgttggaagaatcagacaaaattagtagcacattgaaatcaatgatttcaacgattcaagagtgtgaacatcaaaatatcaatgttgaggataacatcttgcaaaatggaaaagcAGaagtcaatgaaaattccgagaatattgatgtggaggaacaaacaaTgaatgacgaaaatatttggaagatcctgatatagaaaattcaaaaggaaggccaagacatttaaaaagaaacaaggaagaagaaagaaaactaattaaaatctgtctttaataatttttaaaatttcatgttagcaaaaaataatttatatgatctatgcatttgaactttaattcaatttatatcgtacataaaatataTttcatgtaaagtgcaatactatgatattgcgtgggcacaataaaactttacaagatgaggcccacatgtaagtgataggagaaaaactaaaaagcgtagggcccacttgtcggccctattctccctctctgtcttttccccaaaaaatagcagagcaaagcggaggcggcggtgatggtgatggtgatggcagtggtgcgggctgtatgcggtggatggcgatggcgatgacgatggcggtggtgtaggttgtctgcggtgcattatccatttaagttgtatggatgaaccatatagaaaaaaataatccagaacacttttgtaagcatatgtatccattaatataatacagaccaattacaatctcaaatgacagcctggtgaaaactgacgcatctagtgtgagaaagtatgtagaagataatcacacggcattccatataaaaggtgatggcgtgctgtacaaaacaagaggacaatggtgagtaacattcgatgagcaatttactatattcaatatttttttgaattaatttagatcatgcgaacctatctttgctcactagtcaagaacgtctttatatacgatatttttagtgctcttCcctgttgaatcaacttctttctttggctttgccaaaatccttgttgttagccttgacacaccccttgacaatgtgacatatagctgaccatgtgaaaacacgggctctggaagatagatcccaacatttgggatggtttgcccttgtgatttgttaatggtcattgcgaaactgagacgtattgggaattgcttcctcttgaatttgaaaggtagagatatatcgtcggagggagacaaagggatccgtgggatgaacacccttttgttggcatgttgtccaccaacaatctcagcatcaattgcattatcttgaaaagctctaaccattagtctagtcccgttgcacaatccattatttggatcaaggttgcgaagaagaatcacgggacaattgatttttactattagctcgtgtggtgagagacgatttggagtgatagagttaaggtagtccagaggataactgttgtgaaggtcatcatcaacagagtcaaagctgtgataaaccttggcctgccgtagaaatctgtcaatcatattcgcattcagcttgtccacataatcatttttagtggatagaatggcacatgtgctcatataagatgcagagcttgcattcttttcatcatcaagcgagggaaacatatgattaatcaattcgtgtactgaatcctcgctatccccataagcaatcacaatttcatcaggcaagcgaacataatcatctctgatagtgttttcagtgccatttccaattctaaggagatattccgaaaaccatggatcagattgagccctcatgtttcgcgacaatctgatcttcctaatattttcccataaatacgatctctgcaatgttgcatcagttatctgggcccttgtcccacgTGTAACCACGGGAAGTACCTGTCTGAAATCACCGCCAAAAACAATAACCTTTCCTCCAAATGGCAATGAACAACACATAATGTCTTGAAGAGACCTATCAAGTGTCTCTACGGTTTGACGCTTCGCCATTGCAGCTTCATCCCAAATAACTAAGGACGCCATGCGAAGCAATTCCGCGGTGACACTTTGCTTCGTGAAGTTGCACATGCTGTTGTGAGCAATCTTAATAGGGATTTTGAATCTCGAGTACGTGGTACGTCCTCCGGGCAAAATCGACGCTGCTATACCAGACGTCGCAGTTGTAATGGCTATTAATCCCTCGGACCGCACTCTAGCAAGAAGCGCCTTGTACATAAATGTTTTGCCAGTGCCACCTGGGCCGTCGATAAAAAATACCTGGCTCTTCTTATTAGTTACATGATCAATGATCTCATCAAATCCTGCACGCTGCTCATCATTAAGGGATGTGTATATGTCTAACTGGgtcttggtccactggcacgttaagttcctctataatctctgtcattacgtcgttgcaacgttcacctgattagtgaaaacaaatatatgcatcatgaaactattggtgggtGgtgcgaatgtaaattaataagaaaaatacgtgatagcataacaaaaaatacctacatcaatgacctcgggaagAccatactccgtgatatccttccccatggaatgaagcaaatcacgtatgtctcgtagcaccatttgctctactgctgcagggttagtgttccctcggctgcaatctttagacattgcagccttgtgattgtcccatagtgcacagatatcagtgacttcgcAaaataccagtatGgttgcaaataaccaacgcagagcagatggcatttggaaagtggatgcctcattcaaacaatcgtcatgtgacttatccatctgcacaagccctctcttctcgcatgcctctctaaaggtagagtaAGttgtacctaacactgtcctcaaatcttcaaacgaggttgcacctcgcacgtggttgagaagcactctcaagtagtatctctccccgcctacaGggtgagcgtacacaacccgtccaacttggcctctctttgttttccttttttgccacacattctgtccggttatccaacggtagtgttcagggaactccttgtatagcaGtttcctttctttcgggtctacttgattcattttgaaatactccgtaagagttgttctggtagaagatggacgatttacaacatcctcgagattaccatcctcaatatacgtgacatactgcatgttagGAagatgaagttggagttgcagaacaactggatagattccgaatagtgggataccaagcatcctatatatagcctctggtggtgtcacgtatctggcatttctgtactgttgtatctcatttatttccccagatggatcAaccgagaaagatgcacagtcgtgtcctttatacacatacttatAaaggtacttcagagaTttgatgcttgcacAagcctcaacattgatgtgacagctataccgcataagtagtccttcccttgttgtgttgcttggttgaactgtcgaggaaagtcgaagcgacactcaccatccaccatacaagcacaattcctgttcagtgcgccgcatggtccgtgcaacatatgcttgatgacaagacgatgtagctcagggtatttggccttgtctggtatctccgcgcaaatcactttatcgtactcatctagggttgtcaatttactgcctgacttcatgatcaacaggaTGtgttcatgtggtagtCccctcttctgaaactcagtaacgtgcgcgtaagcctgaacctccccaaaataTtttttcttcacAataagatccagcacatctcatagcttagccctgaaaactcttgcgataaggtctagttgatcttgaggttgttggccGggttcgagatgttctgttatctcatctcggtatgggttgcacgtcattgtgatgaagtaatctggcctcccAaaactctggacaagagccatcgcattgaGaaaccttcgttgcatgtcgcgatcacctcctgcaaaagatcgaggtagcacaaccctcttaccaactgccgaactgcttgtctctccagaagaaagcacatcaaccatgccctgcaatcattaaataacAccatgatcaaataactggtatgttgaatcatagatGggtggcacagtcaatagttgtggaaatatgttactccatttacctggtatagctcagcccgaatctttttttggttctcaggttttgagtaccaatcgagcctcataGactcgaTtttgatgtacatgtcaacggcccattgTtggaaaagtcgtcctccgaacaaaATGatgtttagaagtccccttctaacctgcagcctgaagcaatagtactccctcattgtgacaaaattgtcctttttccctttgctagatttactactatcgtcattatcatcttcattatctagataattgtcaacaacctcatcctctgcatccAaacttacatattaatatacataaacaatgcataagggcataaactttagaaattattcgacaaaagccacgagtgtacgtacccagaagatcatcaaaagtgctttcttcgttagtatgtacatcaccaaaagttgatgcttcacatgtttcatccatttccacatcacacggaatctggttGggatcgtcgtacggcattttcaagttccacccagtctccccattagggttaaataaaggatacgccaaaggatcataacaaccatggtatgctttgatataacagggcttatcactttttgcatgtaccaagacatgtctatcaaaagTtttcatcggatcatccccctctaaccagatggcagcaacctgcgaagcggtgggtgcattatatcttcgttggtcaggtgttacattagtgttgagctcaatcatgtagtcatctagattGggcatggatctgactctattgaaggtctgtacgtaaGggttttgtgccaaaatatgtagaatgacccgaacaaggttgatatcaaggtcaggagacctctgaaccctatgggccagtgcttcagcgTCTtctgtatcataaaagtaaagttgcatatggcgtGgcccttgagaacctagaaccaaattatccaggcgatggtacaacgcaccatgcacacgaaatgtatacacaccagtacccgctgcagtgctgacaatgttacatggatgggagtaaatgaaaagtgcatAtgcaagggagaaatatatataaatggatcagcacaacagggagaattatatataaatggatcaacactacagagtttattggatcgaagaacccacatcatgtatgtactctctaaatgagctatctcatctatataaatacagagttcattaaggcatttcacatggatgactatttagccagatttgcatatctgacagttctcaaagtaccagctaccttcacgattggtttgattccttataatggagtaagattcttgttcgctgaaagtacctgagttgaaaatagcacatgtgcaaacatttagataccaggcagcggtggcagagaaagcggaggagaaaatagctgcgtggaattggattatactttctacaatacacatcagggttaaaagaacagAaatatgcagcaagcacaagttaaatttcatcattaagggtagacttaTtgatatattctggatttagcacattgtatttactgtcttataaaaacaaccatgccatttaaggacaccaaagcaacatattgaatttatttgacacagtactatgtgatcagaaaagagagtaggcatatatggacagttctatttgatcaataagagcagagggacattcttactaaatcccggacgagcaatatttttagtaaagttcaatcaatatGttttttcatatgcatttagccaagacctgaaaagcataatcatgtacccttgagactacagagaatgccattggcaatcaagttgtatagattaacagagcagacaatgtaagtaaccatgaataattgcataagtgtgatttaacttgaatagaaacatgtatctttAacggcacagtacctatcgtcagaagcaggaatgaaatgaaaaaatgaccgacgcttagatcttactggaaatcagtaagatatcgtccaaacgtagacaacaaatctatcccatccagttactggaaccaaaacacatttttattcaatagtcgctaccatttcccatgtAtatacagtctaaaccaatgatcttaagaatatatattggtcccgaatacataaatgcatgagtgatccaaatatatttacactttcaagggacaataacaatgtgcatttcagtgctctAaatttcagacaacccaatgtttattaaaaacaaatgtgccatttatctatttccagttcagcacagaaatataaaggcctttcccttcaatttcactatagagcaattatattgcacacagtactatgtgatcatagaagcataggcatatatacttaaatatagcaatacatagtactaatttatgaatatacatagttagatatggcagggactaatcagcgatcgtccgatacacatgtagacaaatcacccttagaatagtgaacatatagtccttttggaagaaacacagggtgtgagaatgttttttcttattccagccacatcaattCcccCACCATACTGAAATCAGCAGTATGGTACATATTCATGAATTTGAAAGTGCTTATAAGAGGAAAATACAACTGTTCACAGTTGGCTTTGGATGTAGATATACAGAAAATGTCATCCATGATTCCCAATTTCCAGCACAAATTACATATGATATATATTGAGCATAAATCATGCTTTTACATAAGATCAACGTCAGGGATACTTATCGGGAGAGAGGAGACATATTAGGGATGGGGTAGGGGTGGCGAAGGGTGTCCTGTACCTTTCGGCACAGGAGGAACGGTGGCGTGAGTACGGATAGGCAGCGGTGGCTCTTGAGGCGGCAGCGGCGTCGCGTTGTCGTTGTCGGTTGTGGATGGCGACCTCCTCAGCCTCCACTGCCTCTGCACGGGGTTtctcaaatcttaaagcttgggagcttttagagtcctagattcagagtcatggcaggatttacaactggcgttaccttttgttgacctgttgaccagcagtgatctggggaagatgcaaaaatgaaagctgttgaaacaacaatattcagttaggaaccaaactacttgtttcgtataaatgggattataatataaagtggtactgcat
More
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| CDS seq | atgcaaAACCCCGTGCAGAGGCAGTGGAGGCTGAGGAGGTCGCCATCCACAACCGACAACGACAACGCGACGCCGCTGCCGCCTCAAGAGCCACCGCTGCCTATCCGTACTCACGCCACCGTTCCTCCTGTGCCGAAAGaggaagtattttgcaagatcaaaactcaaagaccaacatga |
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| Protein seq | MQNPVQRQWRLRRSPSTTDNDNATPLPPQEPPLPIRTHATVPPVPKEEVFCKIKTQRPT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0010780 | OsLiXu_12g0010780.01 | Chr12 | 12624358 | 12634022 | - | NAM | ||
| CDS seq | atgcaaAACCCCGTGCAGAGGCAGTGGAGGCTGAGGAGGTCGCCATCCACAACCGACAACGACAACGCGACGCCGCTGCCGCCTCAAGAGCCACCGCTGCCTATCCGTACTCACGCCACCGTTCCTCCTGTGCCGAAAGaggaagtattttgcaagatcaaaactcaaagaccaacatga |
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| Protein seq | MQNPVQRQWRLRRSPSTTDNDNATPLPPQEPPLPIRTHATVPPVPKEEVFCKIKTQRPT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.432938 | 0.0 | 0.038522 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010860 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011070 | RBH | 0.000000 | 0.000000 | 0.055933 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0180900 | RBH | 0.1409635 | 0.316807 | 0.1004655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0202000 | RBH | 0.825415 | 1.003353 | 1.5057415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0010590 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010840 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010720 | RBH | 0.457958 | 2.144360 | 0.895856 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
