Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0008580 | OGI:08019660 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:8664887-8666362 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaaagttttcatccaagcagcacccaccaactgttcgatgaaatgtcaagcccattggaggtgtttgaggaagacgttcttcttgtcatgagtgaggagaacatcacatgggatgaagcactccatctgttacaagaggaactgaaggatgcccaatgtagatttgatgagaagctagatcgttttttggaggtgttcggcttgatgggagacaagagcaatcaatctgaggaagacaaaaggagcaatgaatctgaggaattcagtgcctccatcaaggagctcacccccaccaccgaggctgctgcatttcaatcaccccaagcatcaccttcttcagcgcccaccaagtgttcgataatttgctttggcctcgacaccatgtctgacctcaacatggcagcagcagttgtgtgcgccaccacttctctggcctccatggagttagtggctggagggaacgcaacctgtgaaccctacgttgacacccctggtcatcccaaggagacgcatgtcaagtgttcgatggttggccttgaggtcaagggtggcaccgaccacaccagggtcacatgccagaccatgatgggtgtgcctgacggcgttctagtacctgatgcatcatccaaggtcttctcgccatggttgattgttgaaatggaccttgttcccttgctgctcactgtgtgtttgatgaaatgttccaaagacaagaagaagctgctactggggaatgctaagagaaattcatggacaccttcttgggtgggcggagtgattagacgatgggagttgcagcctttgccatggcctggatccaaattatattgggaaggtttaccattgatgcccccatggccaccaccgactcgagtaagcttcctggcatgtgagacttttgatattggagctctagtcattggaacagtgattttaacacaagcgatggttgagataaaaccatggcctccaccaagtgaagtaagtggtcttcccttacttccaattcaaagtattggagcatttcatactgagaggaaagttacagacttgcattgggctgagttgaaagcttggtctctgtttgatgaaaatggtaccagccacatcctaacagatgagccgtgtgagctttacttgggttgtgtaattttcactgctggaaacactaggaaccttgaaaagcttgagtttataaggtggaccaagtggcaacaacaactttttgcagaaagggattatcctaatagtgctgaagggaatcaattaattgcttggaattttaagcagtacattgatggaggagtgctttcctttgttgctataaagttgtcaatccagccaacaaacgttgagcaaatcagtcagtacattgttcaatattcaagtattgggagagaattggatttctatcataaattgcatacacttgctcaagttattgggagaaaggattccttacttcagctatctga
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| CDS seq | atgtcaagcccattggaggtgtttgaggaagacgttcttcttgtcatgagtgaggagaacatcacatgggatgaagcactccatctgttacaagaggaactgaaggatgcccaatgtagatttgatgagaagctagatcgttttttggaggtgttcggcttgatgggagacaagagcaatcaatctgaggaagacaaaaggagcaatgaatctgaggaattcagtgcctccatcaaggagctcacccccaccaccgaggctgctgcatttcaatcaccccaagcatcaccttcttcagcgcccaccaagtgttcgataatttgctttggcctcgacaccatgtctgacctcaacatggcagcagcagttgtgtgcgccaccacttctctggcctccatggagttagtggctggagggaacgcaacctgtgaaccctacgttgacacccctggtcatcccaaggagacgcatgtcaagtgttcgatggttggccttgaggtcaagggtggcaccgaccacaccagggtcacatgccagaccatgatgggtgtgcctgacggcgttctagtacctgatgcatcatccaaggtcttctcgccatggttgattgttgaaatggaccttgttcccttgctgctcactgtgtgtttgatgaaatgttccaaagacaagaagaagctgctactggggaatgctaagagaaattcatggacaccttcttgggtgggcggagtgattagacgatgggagttgcagcctttgccatggcctggatccaaattatattgggaaggtttaccattgatgcccccatggccaccaccgactcgagtaagcttcctggcatgtgagacttttgatattggagctctagtcattggaacagtgattttaacacaagcgatggttgagataaaaccatggcctccaccaagtgaagtaagtggtcttcccttacttccaattcaaagtattggagcatttcatactgagaggaaagttacagacttgcattgggctgagttgaaagcttggtctctgtttgatgaaaatggtaccagccacatcctaacagatgagccgtgtgagctttacttgggttgtgtaattttcactgctggaaacactaggaaccttgaaaagcttgagtttataaggtggaccaagtggcaacaacaactttttgcagaaagggattatcctaatagtgctgaagggaatcaattaattgcttggaattttaagcagtacattgatggaggagtgctttcctttgttgctataaagttgtcaatccagccaacaaacgttgagcaaatcactatctga
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| Protein seq | MSSPLEVFEEDVLLVMSEENITWDEALHLLQEELKDAQCRFDEKLDRFLEVFGLMGDKSNQSEEDKRSNESEEFSASIKELTPTTEAAAFQSPQASPSSAPTKCSIICFGLDTMSDLNMAAAVVCATTSLASMELVAGGNATCEPYVDTPGHPKETHVKCSMVGLEVKGGTDHTRVTCQTMMGVPDGVLVPDASSKVFSPWLIVEMDLVPLLLTVCLMKCSKDKKKLLLGNAKRNSWTPSWVGGVIRRWELQPLPWPGSKLYWEGLPLMPPWPPPTRVSFLACETFDIGALVIGTVILTQAMVEIKPWPPPSEVSGLPLLPIQSIGAFHTERKVTDLHWAELKAWSLFDENGTSHILTDEPCELYLGCVIFTAGNTRNLEKLEFIRWTKWQQQLFAERDYPNSAEGNQLIAWNFKQYIDGGVLSFVAIKLSIQPTNVEQITI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0008580 | OsLiXu_12g0008580.01 | Chr12 | 8664887 | 8666362 | + | NAM | ||
| CDS seq | atgtcaagcccattggaggtgtttgaggaagacgttcttcttgtcatgagtgaggagaacatcacatgggatgaagcactccatctgttacaagaggaactgaaggatgcccaatgtagatttgatgagaagctagatcgttttttggaggtgttcggcttgatgggagacaagagcaatcaatctgaggaagacaaaaggagcaatgaatctgaggaattcagtgcctccatcaaggagctcacccccaccaccgaggctgctgcatttcaatcaccccaagcatcaccttcttcagcgcccaccaagtgttcgataatttgctttggcctcgacaccatgtctgacctcaacatggcagcagcagttgtgtgcgccaccacttctctggcctccatggagttagtggctggagggaacgcaacctgtgaaccctacgttgacacccctggtcatcccaaggagacgcatgtcaagtgttcgatggttggccttgaggtcaagggtggcaccgaccacaccagggtcacatgccagaccatgatgggtgtgcctgacggcgttctagtacctgatgcatcatccaaggtcttctcgccatggttgattgttgaaatggaccttgttcccttgctgctcactgtgtgtttgatgaaatgttccaaagacaagaagaagctgctactggggaatgctaagagaaattcatggacaccttcttgggtgggcggagtgattagacgatgggagttgcagcctttgccatggcctggatccaaattatattgggaaggtttaccattgatgcccccatggccaccaccgactcgagtaagcttcctggcatgtgagacttttgatattggagctctagtcattggaacagtgattttaacacaagcgatggttgagataaaaccatggcctccaccaagtgaagtaagtggtcttcccttacttccaattcaaagtattggagcatttcatactgagaggaaagttacagacttgcattgggctgagttgaaagcttggtctctgtttgatgaaaatggtaccagccacatcctaacagatgagccgtgtgagctttacttgggttgtgtaattttcactgctggaaacactaggaaccttgaaaagcttgagtttataaggtggaccaagtggcaacaacaactttttgcagaaagggattatcctaatagtgctgaagggaatcaattaattgcttggaattttaagcagtacattgatggaggagtgctttcctttgttgctataaagttgtcaatccagccaacaaacgttgagcaaatcactatctga
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| Protein seq | MSSPLEVFEEDVLLVMSEENITWDEALHLLQEELKDAQCRFDEKLDRFLEVFGLMGDKSNQSEEDKRSNESEEFSASIKELTPTTEAAAFQSPQASPSSAPTKCSIICFGLDTMSDLNMAAAVVCATTSLASMELVAGGNATCEPYVDTPGHPKETHVKCSMVGLEVKGGTDHTRVTCQTMMGVPDGVLVPDASSKVFSPWLIVEMDLVPLLLTVCLMKCSKDKKKLLLGNAKRNSWTPSWVGGVIRRWELQPLPWPGSKLYWEGLPLMPPWPPPTRVSFLACETFDIGALVIGTVILTQAMVEIKPWPPPSEVSGLPLLPIQSIGAFHTERKVTDLHWAELKAWSLFDENGTSHILTDEPCELYLGCVIFTAGNTRNLEKLEFIRWTKWQQQLFAERDYPNSAEGNQLIAWNFKQYIDGGVLSFVAIKLSIQPTNVEQITI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16490 | RBH | 0.150141 | 0.250503 | 0.129081 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008700 | RBH | 0.045046 | 1.941642 | 0.234632 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008810 | RBH | 0.000000 | 0.397858 | 0.395330 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008820 | RBH | 0.000000 | 0.0 | 1.635989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018860 | SBH | 4.131951 | 7.532061 | 6.898933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0129600 | RBH | 0.2778495 | 0.958341 | 0.7113595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031480 | RBH | 0.055575 | 0.138194 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008420 | RBH | 0.027109 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031680 | RBH | 0.0 | 0.788775 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015650 | SBH | 0.0 | 0.0 | 0.212345 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008430 | RBH | 0.0 | 0.0 | 0.0 |
