Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0007930 | OGI:12020670 | 4/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:7289990-7293270 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacagccgcagcgtggtcagccgcGggagagcagtgccggcggagagggagaagccgccgcacccggtgaggtcgagcacgcggagcgtctccgatggctgggtgctgctgtcgagggagaggtggaactccccttccatctccgcgacctccttgtcggatgacggcccgtcggcggacttgacggcggcgacgcggagctcctcgacgcggcgcgccaccgggtgggagacgacgccggcaaccacatcgtgcttcctcccccagtcctgcgggtcgcggtgcaggaacgcatcggcgagcgcggcgtgggcagagcggaagaacgcgtcgcggagggagaagaagtcgtcgccccggcggatgaggccggatggcgaggttgacggcgccggtggagcgccagagcgagcgccagcgggtggagaggaggccggtggacgcggcctccttcgccggcgtgaaaaaaaaggatgcctacctgaaaaaggtgtgccatgagtccgtgacagagagaggaagagatgaacagagaaagagaggaagaagatgaacagagaaagagagattgacaagtgggtccataggcaaacttgtctttaaccaaagtttctctctccttttcgatcggaaataataaaataatgggaggattgtctagcagctaattaccatttttttacagtgtccacgagcaaatacacgatcttcgggtgtctcacagcaaatgacataatctttcgatgtcctgtagcaaattttgccatttttaagtgttgtatgggctcatagtctaactcgtatagtcactagttaaatatctctttaattacaacttcaatcttataggcatattattcggttcggtccgatctatcaagattgtttttgataaagaatgctttattgattattttgcaaagtttagctctagccgagatgatagcaagaatctcactgtttatctgatcatttgaatctatatcgaacccatagttgttgatctagactctatcgacgttggctggtcactcgatttcacatcggctaattggccgattggctccttgatctctatcttgttacttgtaggattaaactagctagcacactctgaatctcaattgataagacctccactagagttaagcagatatcccaatcctttatgtgccatgatgaatttaacgtcaccaatactcagtagtattatgatgtaacaatcgtttaatttacagcttgttactgccaccccaccttaaaatatagtaaatcttagctatacattgtgagatattctttctatatacattatcaagggagtatccatattacttccgatagttttttatatgaaaatttttaaattttagtataattaaagtgtagttatatcttaactacactataattactccctccgttacaaactatttgagaccgttgacttcttagtacgtgttttaccattcgttttattAaaaaaaataagtaattatttattcttttcaaatcatttgattcattgttaaatatactttcatgtacacatatagttttatatgtttcacaaacttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaatggtgtcaaatattttgaaatagagggagtataatgtaacttatatatgtaagtcgtagtactaactaatcagacaaaaacccgtgactagtagttggttaatgcaacaagccttcacctaacagatcgggagtttgactccctgctcccgcacacaattgcaagatttttctctatctgtagcatgaatctcaacacgatccgatggtAaaaaaaattaaacgttttggcatctataacatgaatcttaatgtgatccactgatAaaaaaattaaaagttttggaacataataacttgtgaacattttcttaagcaaattcgtattaccaaaagttggagtaatactttcatcctaaaatatctctctttaggatttaaatttgttctaaaatacttgtcaccgcggggtgctagttgtccaatcaatcattttctattcaaaagttttcctattttactgatctcaataaccattttatttcctatcatgcgcattatttactaatggatattatagttttttattttaaatcttaatttattctaaacaacctaaaaaagaaattgtggaatgaagggagtagtactctctccgtccctaaatatttgatgtcattgacttttttaaacatgtttgactattcgtcttattcAaaaacttttgtaaaacatgtatacataaaagtatatatttaacaatgaattaaatgataggaaaagaattaatcattacttaatttttttaataagacgaacggtcaaacatgttaaaaaaagatcaacaacatcaaatatttagggatggagaaagtacaccctccgtcccataaaaaatcaacttttggagatgaacttggacaagcatgtgtccaattgtcctaagttaggactgaggtaacagtagaaagccccttttggaccgctcgagcttgtcgatctgtcaagtggccacggattagagcaggtacaatagcaggctataagccagttacaaatatattttaagaagataaataaggagagataagagcagcggactacagatttgtagctagttgtagcacgaactctaagacacaatgtgtttatgataggtaagaccatgtattaataagagcaagtataatagtaggctataagctgactaaatgctgagttggagaaaagaagagaggagagagaggagaagtgggctataaacttatagttggcttggacacaagaaccaaaaaaactctgtgaagagctaactattgtatgggtaggctgagagaaggctataaataaccttatagccagcaggtcggctgtattattagccttgctctaatgtagcatgtaactattgtatgaattaattattatattcactatagatgatttgtagctagtagtaggctacactattaaacttgctgttacaccgcgcgtactgtactgtcgtacaaaaccgatgaggctgctgcaccggcgcgacagccgaggcgcgccacgtacgcccacgacccaccccacctttctttcccgctacgacgccattggcggagccgcaagcgaagctagctgtacccatcaaatttccattggcaaatctagcgatttctgtgcgatgcgacgagctcccattgggccagctcgcgtagcacgcacagtacacat
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| CDS seq | atgtgtactgactgggggaggaagcacgatgtggttgccggcgtcgtctcccacccggtggcgcgccgcgtcgaggagctccgcgtcgccgccgtcaagtccgccgacgggccgtcatccgacaaggaggtcgcggagatggaaggggagttccacctctccctcgacagcagcacccagccatcggagacgctccgcgtgctcgacctcaccgggtgcggcggcttctccctctccgccggcactgctctccCgcggctgaccacgctgcggctgtga |
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| Protein seq | MCTDWGRKHDVVAGVVSHPVARRVEELRVAAVKSADGPSSDKEVAEMEGEFHLSLDSSTQPSETLRVLDLTGCGGFSLSAGTALPRLTTLRL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0007930 | OsLiXu_12g0007930.01 | Chr12 | 7289990 | 7293270 | - | NAM | ||
| CDS seq | atgtgtactgactgggggaggaagcacgatgtggttgccggcgtcgtctcccacccggtggcgcgccgcgtcgaggagctccgcgtcgccgccgtcaagtccgccgacgggccgtcatccgacaaggaggtcgcggagatggaaggggagttccacctctccctcgacagcagcacccagccatcggagacgctccgcgtgctcgacctcaccgggtgcggcggcttctccctctccgccggcactgctctccCgcggctgaccacgctgcggctgtga
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| Protein seq | MCTDWGRKHDVVAGVVSHPVARRVEELRVAAVKSADGPSSDKEVAEMEGEFHLSLDSSTQPSETLRVLDLTGCGGFSLSAGTALPRLTTLRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0538400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12120 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0538400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016290 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016200 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003960 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0112700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004110 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0118400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003920 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0015930 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016110 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004220 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003950 | SBH | 0.0 | 0.0 | 0.0 |
