Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0007320 | OGI:12018480 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:6402530-6407784 | ||||||||
| Gene Symbol | OsPTR3, PTR3, PTR3-A | ||||||||||
| DNA seq | ctcatcacaagccacaaagatatatcatatcatctcatctcattaggagtcaagactgcgacacatagtgaagtgaagcccacttagctagcttgcaattgagatcttgcagagaattgtgaagatctagagctataaccatggctctgcaagtgcaaggccttgtggactggaggggaagaccggttgatcccaggaggcatggtggtctgaaggcagtaatgttcatctacggtaagtatataacttccttaatccgtagtcgtcggatcagaaatcaatggtcaggatcagctcaagggcccctgatcggcatgtgttgggttgtttccttgtgcaactgaagaggaccagctgtcctagcaaataacacatgatgatgcgtcaaattttatttatttatatatctttctttcttcattggaaaatggagagctgaaccagcacatagtccctctagtttaataatacttattgttttagacgaggatatgatctaaaaaccaactttaaccactattttctattataatatatatataaatatcaataaatatataattatatcgaagtacgtactttttaaaactaatattttgaaaattatccacagttaaatattttaaagtttaacattagccttatccaatacaacaagtattgtcaaccgggagagagtaccacatttaaaataaaattatttatctattgcttcaagaacactaagttacataattttttttaagtaaagaaggataacattttgttcttgagaaagggatgtatttatcgttataaaaggagaacatggtatttaccgttattcatttacaaactataggctgatcatacacaattttctttaatttgcgcttgcagtcttgattgtgatgaccaacatggggaacattcccactatgctaaacatagtgagctacctgcatggcacaatgcacatgggcatcgccgatgcctccaccaccgccgccaacttctacggtgcaatctgtgtcttctccttcctcggcgccttcatctccgactcctacatcaagcgcttctacaccatcctcatctttgctcccatcgaaattctggcaagcatcctaaaccattcgtacatctttaggattatatgaatggtactttaagcttttgggtctactggttggccaatagtaaagtgacaaaggctcagttcttaattataaagttaaaacatgtttagtctatctcatcaatggtttaaggtttgagtaacttttccaattgtttttattggattctatatcagttgatattattctactaccaaaattatcatcagtagaaaattagaagctttgagtaatttagtcactaataattaataagtgttttaaaaaaaactattcccttagataatacaaataaatacaatccgttagattaaaaagatacctaaattttactaccaatagatacaaccgtaaaataatttaatttcacatttcactgtttacaatataccttgtttcacttttcaattaggtttattacatactttcattatatatcaaaacatatcaaaataagtttcgctttgcactaagttgcttcctataatagatgaagagaagccttgtaaaatacgaatacaacctatgaaacttctcgaatttagatcatttttcatgatgtttcttttaaattttatgaaatttctataggtttgacgaagcatataatggtattaagtgaaaactaagagcatccgcaatggttatctataggctctctacaagagatccatgtcagcatattttcatacttggaagagattaaatgaagagagagagagtaaagctatctactaacctggagatagtctatagagaaaaacgaggcaatggattacagagctatagatacccatgtagacatactatcgaagttgtttattattaatctagtctaatgctgagatgtacatgttttatagatagcaccttattttaccattgcgggtgctctaatatcgttagacctattgtaaagtgaaaatctgtagaaaaccttgcgcgcgcaaagcaaaacaaagtacactttaccctgtgtaaagtacaatttactccatccttcAaaaaaaaaatcaatctaacttactgtacttaatttattagtgcaagtgaaaaaccaaaaaccagtatatatatggattaataatgtattaatgtgattatcacttggtagggatacatgctgctagcatgccaagcgcacttcccgtcgctgcacccgccgccgtgcgacgccgccgccggccagtgcgcggcggtgagcgggcggaacctgagcctgctccggctgggcctgtacgtgatcccgctcggcgagggcgcgctgcgggtgtgcggggcggcgctgggtggcgaccagttcgacggctgcgaggtcggcggcgacgacccggcggcggcggcggcggcggaggcccgggggaaggcgagcttcttcaactggttcgccttctgcatctcgctgggggggctcgtggggctcgtgctcgtggtgtgggtgcagaacaacgaagggtgggacctcggattcgcgctcgccgcgctcatggcgctcgtcgccatggccgtcgtcctcgccggcctccccttctaccgccaccgcgttcccaccggcagcccgctcaccagaatcctccaggtaactcaaagtagtagtactcaactgatctgatcagagtggcacatcaaagaaaaatttcgataaaaacatttgaattcgtaacaaatttgcactgaatttggacacacggagtgagatgcttgcagtggcaaggggatgtggtttcagttcccaacacgcttataattttttcttaaaagatatttgaagggatatcatttatattgtcttcttaaaaaaaagtttagagagacttcttttccttcaaatcatgtatttttttagaacagtacagagtaccgagctgagataccgaagaaattttgggatcaaagcttcaaattttagaaaatttctcttttttaaaaaaaaatcttatcaaattttcactgaatttggatagtttcttctttcgttttttttttaccatggtacatccttccgggacctatcagtagacctgaaattttctacaattatgaaattaagttatttcttggaagagtatatataagtccctatctatatctactttccttaagcataatatagatttaaaatttgtgagcgctgtatggagattgtgaatttgctggtaatttgtcggagagatgtgtgtataaatttttaatcatccaacattttgatttttgtgtgaaatttgacaggtttttgtggcggcgttcaggaagaggaacgtcacgatgccggagagcttggtggaaatgcatgagtgttctgacggctcgaccatcgagctgctggataaaactccagacttcaagtaagcctgaaatttaagtagtatctcgaatctaaagggaattttgtaatccatttatagattttccaacctgtgtttcacttttagtatggccataatttctcccttgtgtcgttaatttgttaaccactcgcccctcctaataacttttttgtattttggcaattttttactccatctcaatatatcctgcaaaactcatgttgtcatcattaaaaaaacattatcacaatgtaaaggatttcttttgtaattcattgaattttatattttcgaatttattttaccatgaattttctctctctttctctctttcagagaggagtatttttaatctgacctctacatctaaccagatatatacaatatttttaatttagaaacatagccctcaagcaaatcaatctgaaattagcttctatgaattttctcaaacaaatcaatctgaaattagcttctatgaattttctcttgtgtggttaatttgttaattttggtggcatttctctttggtgtgtgtgcaagcttaggttcctggacaaggcggcggtggacgacggcgaccggcggcgatggtcggcgtgcacggtgacgcaggtggaggagacgaagatcatcctccgcatgctccccgtcttcctcacctccgtcctcggctacgtccccatccctctcctcctcaccttcaccgtgcagcagggcggcgccatggacacccgcctcgccggcaccagcgtcccgccggcgagcctcttcgtcgtccccatcgtcttccagatgctcatcctcgtcgcctacgaccgcgccgccgtgccgtggctccgccgcgccacgggctacgccgcgggcgtcacccacctccagcgcgtcggcctcgggttcgcatccagcgccgccgcgctcgcgctcgccgccgccgtggagtcgcgccgccgccgctgcctcggcgtcgcggcgccggccatgtcggtgttctggctgacgccgcagttcttcctcctcggcgtcatggacgtcacctccttcgtcggcctcctcgagttcttctacagcgaggcgtccgccggcatgaagtccatcggcggcgccgtcttcttctgcatcctcggcgtcgcgtcgtggctcggcggcgccctcatccaggcggtcaaccgcgccaccgccggcggtgccggacacggcggctggctcgacggcgccgacctcgacgccagccacctcgaccggttctactggctgctcgccgtgttcgagctcgtcgccttcttcctctacctctactccgcatggaggtacacgtataggcatcatccacgagttcagccatcaatggaggatgccaaggtatccgcgacagcgacgacgacgacgaagaaagccgaggtttgagtgacagttgaaactactacctccgtctcagaaatgtagctatttctggctatgaatcttggacaagttttgttttcaaggttcatagttgaagatagcttcattttagaacgaaggtggtaaaatgaaagctgcgatggctctatgtaccatagaaaaaaaaatgttgtagctgatgatcctataggtgatgatgagacagtagtgtgggtttgaaccctcggattgagaaatggatggctgagattgcgtgcggttagtgttgtgcagtcacaatagtaaccgcactgtaactcagtccagtgtttacagagaggctctcgtataaatgttagtattttgaatatttcatgttttggattgatataatctaataaaactgaaaagatcgttggtggatatt
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| CDS seq | atgggcatcgccgatgcctccaccaccgccgccaacttctacggtgcaatctgtgtcttctccttcctcggcgccttcatctccgactcctacatcaagcgcttctacaccatcctcatctttgctcccatcgaaattctgggatacatgctgctagcatgccaagcgcacttcccgtcgctgcacccgccgccgtgcgacgccgccgccggccagtgcgcggcggtgagcgggcggaacctgagcctgctccggctgggcctgtacgtgatcccgctcggcgagggcgcgctgcgggtgtgcggggcggcgctgggtggcgaccagttcgacggctgcgaggtcggcggcgacgacccggcggcggcggcggcggcggaggcccgggggaaggcgagcttcttcaactggttcgccttctgcatctcgctgggggggctcgtggggctcgtgctcgtggtgtgggtgcagaacaacgaagggtgggacctcggattcgcgctcgccgcgctcatggcgctcgtcgccatggccgtcgtcctcgccggcctccccttctaccgccaccgcgttcccaccggcagcccgctcaccagaatcctccaggtttttgtggcggcgttcaggaagaggaacgtcacgatgccggagagcttggtggaaatgcatgagtgttctgacggctcgaccatcgagctgctggataaaactccagacttcaagttcctggacaaggcggcggtggacgacggcgaccggcggcgatggtcggcgtgcacggtgacgcaggtggaggagacgaagatcatcctccgcatgctccccgtcttcctcacctccgtcctcggctacgtccccatccctctcctcctcaccttcaccgtgcagcagggcggcgccatggacacccgcctcgccggcaccagcgtcccgccggcgagcctcttcgtcgtccccatcgtcttccagatgctcatcctcgtcgcctacgaccgcgccgccgtgccgtggctccgccgcgccacgggctacgccgcgggcgtcacccacctccagcgcgtcggcctcgggttcgcatccagcgccgccgcgctcgcgctcgccgccgccgtggagtcgcgccgccgccgctgcctcggcgtcgcggcgccggccatgtcggtgttctggctgacgccgcagttcttcctcctcggcgtcatggacgtcacctccttcgtcggcctcctcgagttcttctacagcgaggcgtccgccggcatgaagtccatcggcggcgccgtcttcttctgcatcctcggcgtcgcgtcgtggctcggcggcgccctcatccaggcggtcaaccgcgccaccgccggcggtgccggacacggcggctggctcgacggcgccgacctcgacgccagccacctcgaccggttctactggctgctcgccgtgttcgagctcgtcgccttcttcctctacctctactccgcatggaggtacacgtataggcatcatccacgagttcagccatcaatggaggatgccaaggtatccgcgacagcgacgacgacgacgaagaaagccgaggtt
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| Protein seq | MGIADASTTAANFYGAICVFSFLGAFISDSYIKRFYTILIFAPIEILGYMLLACQAHFPSLHPPPCDAAAGQCAAVSGRNLSLLRLGLYVIPLGEGALRVCGAALGGDQFDGCEVGGDDPAAAAAAEARGKASFFNWFAFCISLGGLVGLVLVVWVQNNEGWDLGFALAALMALVAMAVVLAGLPFYRHRVPTGSPLTRILQVFVAAFRKRNVTMPESLVEMHECSDGSTIELLDKTPDFKFLDKAAVDDGDRRRWSACTVTQVEETKIILRMLPVFLTSVLGYVPIPLLLTFTVQQGGAMDTRLAGTSVPPASLFVVPIVFQMLILVAYDRAAVPWLRRATGYAAGVTHLQRVGLGFASSAAALALAAAVESRRRRCLGVAAPAMSVFWLTPQFFLLGVMDVTSFVGLLEFFYSEASAGMKSIGGAVFFCILGVASWLGGALIQAVNRATAGGAGHGGWLDGADLDASHLDRFYWLLAVFELVAFFLYLYSAWRYTYRHHPRVQPSMEDAKVSATATTTTKKAEV |
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| Function | Protein NRT1/ PTR FAMILY 4.3 [UniProtKB/Swiss-Prot:Q93VV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0007320 | OsLiXu_12g0007320.01 | Chr12 | 6403482 | 6407784 | + | NAM | ||
| CDS seq | atgggcatcgccgatgcctccaccaccgccgccaacttctacggtgcaatctgtgtcttctccttcctcggcgccttcatctccgactcctacatcaagcgcttctacaccatcctcatctttgctcccatcgaaattctgggatacatgctgctagcatgccaagcgcacttcccgtcgctgcacccgccgccgtgcgacgccgccgccggccagtgcgcggcggtgagcgggcggaacctgagcctgctccggctgggcctgtacgtgatcccgctcggcgagggcgcgctgcgggtgtgcggggcggcgctgggtggcgaccagttcgacggctgcgaggtcggcggcgacgacccggcggcggcggcggcggcggaggcccgggggaaggcgagcttcttcaactggttcgccttctgcatctcgctgggggggctcgtggggctcgtgctcgtggtgtgggtgcagaacaacgaagggtgggacctcggattcgcgctcgccgcgctcatggcgctcgtcgccatggccgtcgtcctcgccggcctccccttctaccgccaccgcgttcccaccggcagcccgctcaccagaatcctccaggtttttgtggcggcgttcaggaagaggaacgtcacgatgccggagagcttggtggaaatgcatgagtgttctgacggctcgaccatcgagctgctggataaaactccagacttcaagttcctggacaaggcggcggtggacgacggcgaccggcggcgatggtcggcgtgcacggtgacgcaggtggaggagacgaagatcatcctccgcatgctccccgtcttcctcacctccgtcctcggctacgtccccatccctctcctcctcaccttcaccgtgcagcagggcggcgccatggacacccgcctcgccggcaccagcgtcccgccggcgagcctcttcgtcgtccccatcgtcttccagatgctcatcctcgtcgcctacgaccgcgccgccgtgccgtggctccgccgcgccacgggctacgccgcgggcgtcacccacctccagcgcgtcggcctcgggttcgcatccagcgccgccgcgctcgcgctcgccgccgccgtggagtcgcgccgccgccgctgcctcggcgtcgcggcgccggccatgtcggtgttctggctgacgccgcagttcttcctcctcggcgtcatggacgtcacctccttcgtcggcctcctcgagttcttctacagcgaggcgtccgccggcatgaagtccatcggcggcgccgtcttcttctgcatcctcggcgtcgcgtcgtggctcggcggcgccctcatccaggcggtcaaccgcgccaccgccggcggtgccggacacggcggctggctcgacggcgccgacctcgacgccagccacctcgaccggttctactggctgctcgccgtgttcgagctcgtcgccttcttcctctacctctactccgcatggaggtacacgtataggcatcatccacgagttcagccatcaatggaggatgccaaggtatccgcgacagcgacgacgacgacgaagaaagccgaggtt
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| Protein seq | MGIADASTTAANFYGAICVFSFLGAFISDSYIKRFYTILIFAPIEILGYMLLACQAHFPSLHPPPCDAAAGQCAAVSGRNLSLLRLGLYVIPLGEGALRVCGAALGGDQFDGCEVGGDDPAAAAAAEARGKASFFNWFAFCISLGGLVGLVLVVWVQNNEGWDLGFALAALMALVAMAVVLAGLPFYRHRVPTGSPLTRILQVFVAAFRKRNVTMPESLVEMHECSDGSTIELLDKTPDFKFLDKAAVDDGDRRRWSACTVTQVEETKIILRMLPVFLTSVLGYVPIPLLLTFTVQQGGAMDTRLAGTSVPPASLFVVPIVFQMLILVAYDRAAVPWLRRATGYAAGVTHLQRVGLGFASSAAALALAAAVESRRRRCLGVAAPAMSVFWLTPQFFLLGVMDVTSFVGLLEFFYSEASAGMKSIGGAVFFCILGVASWLGGALIQAVNRATAGGAGHGGWLDGADLDASHLDRFYWLLAVFELVAFFLYLYSAWRYTYRHHPRVQPSMEDAKVSATATTTTKKAEV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0007320 | OsLiXu_12g0007320.02 | Chr12 | 6402530 | 6407693 | + | IsoSeq | ||
| CDS seq | atggcacaatgcacatgggcatcgccgatgcctccaccaccgccgccaacttctacggtgcaatctgtgtcttctccttcctcggcgccttcatctccgactcctacatcaagcgcttctacaccatcctcatctttgctcccatcgaaattctgggatacatgc |
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| Protein seq | MAQCTWASPMPPPPPPTSTVQSVSSPSSAPSSPTPTSSASTPSSSLLPSKFWDTC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.244814 | 0.0 | 4.045451 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0231000 | RBH | 1.859568 | 1.609775 | 1.331119 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12934 | RBH | 1.252630 | 1.078165 | 0.333379 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0231000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007350 | RBH | 1.551844 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007440 | RBH | 0.658106 | 0.0 | 2.449969 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007540 | RBH | 0.331576 | 1.172786 | 1.333037 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007520 | RBH | 0.239095 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007320 | RBH | 5.593410 | 0.0 | 8.266344 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0101000 | RBH | 6.132262 | 0.061315 | 0.1179505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007290 | RBH | 1.642678 | 0.0 | 1.485480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0106100 | RBH | 5.822605 | 0.309217 | 0.0272745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007150 | RBH | 0.181877 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007450 | RBH | 0.469227 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007290 | RBH | 3.521007 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018190 | SBH | 0.000000 | 0.131494 | 0.470778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007310 | RBH | 0.974056 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007220 | RBH | 0.857499 | 0.0 | 1.626562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007270 | RBH | 6.772737 | 0.0 | 13.285444 |
