Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0006610 | OGI:12014870 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:5340280-5342599 | ||||||||
| Gene Symbol | OsZHD3 | ||||||||||
| DNA seq | atttttatttttatttttctccatttctccttgtcattagatacaccacaagacaacaagcttcttcttcacctcacctctcatctcatcaccccccacaagctcatagctctcctcctcctactcctctcacaatctctttgttttcttgtaattccagccactttgcaGggcttgtgtttgtgcccttgctagttgcttctcattgctgcaatggtGgaaggagagaacatttgagctatctcactcactcatcagcatggccttgctccctctttgccctcctgattagcttagttcTtgagagagacactcacacacactgcaaggtttgttttcttgtcagtttttctttgttccatcttgtttgttcctccactgtttccaaccagtgcaggaacaccacctgttgtccatcaattggtgtccctcccacagcaaaaaggaacatAcctagactactgctaggcagtctaggaggtttcttgttttctcactaaTtttgtttattagtttgagtagttgttttttttgtgtgtgtgtttatgctagtaggagtctagaggagctaggttcaagctcaaaggctggtccaggcatatgttaggctacaagttgaTattgctaagaacaaattaagcAaagcatcccttgcttatagtagtagtagtactagtgattAaattcttgtgcatggtgattgatggtgagtagcccaaggagaaaaataaagtttattttttctttttaggctttggaccagaataagacctccatcttggaggttgcaactggtttagtattatcttgtttgtcaagatcccaagaacatctccatgactaatcctcttctatcTttttgttgcctttatgtttgtatgtttgtctccttttgagactcccaatgagcaatggattcttgcaatcttgattggtttatagtacttggatagttttgcaaattaagctcagctcccatggcgccatggcggcattcgtctatttcgtcTtgctcttgctgattcttgctgctgtgtccgctaTtgcagcaagctcgggtagcttctggaagcttctgcTGtgtgtCcgccattgcaaatggatctttctggggcgcaGggcgagctgccgttgccaatgcacgccgcggcgtcgccgtaccttggcttgcaccatgaccaccaccaccatcatggcggcggcggcggtggagggatgaaTgggcggcacatgtcgccgcctacgcCAccGgcggcggcggaggagtcgaaggcggtggtggtggtgtcgtcgtcgtcggcggcggtggcggcggcgaGgtacagggagtgcctcaagaaccacgcggcggccatcggcggcagcgccacggacgggtgcggcgagttcatgcccggcGgcgaggaaggctcgctcgacgcgctccgctgctccgcctgcggctgccaccgcaacttccaccgcaaggagctcgacgccgccgccacgccgctccaccaccaccaccaactgctcggcgtcggcgcgcacccccgcggccacggccaccaccaccaccacctcctggtggcggcgctgccgccgccgacgcggatggtgatgccactgagcgccatgcacacgtcggagtcggacgacGccgcggcgcgccccggcggcggcggcgcggtggcggcgaggaagcggttccggaccaagttcacggcggagcagaaGgcgcggatgctggggttcgccgaggaggtcgggtGgcggctgcagaagctggaggacgccgtcgtgcagcgcttctgccaggaGgtcggcgtcaagcgccgcgtcctcaaGgtctggatgcacaacaacaagcacaccctcgcccgccgccacctccacccctcctccgccgccgccgccggagacGacgacgacggcgcgccgccgcaccccgaccccggcggcgcgagctcgccgccgccgccgCcgcaccacctccggctccagtaacccaacacatcaagaaatccattgacaacAaaattaaggctcatttctagcttagctgcattgcaTtgcattgctctactactgTtccatcaaattgatgctcaatcctctctctctcttctgtttAattaattaatccatgtttttattttctctttatttctctaacttgttgtctagtgttAattagtgagctgattggtgatcatgtgagtgatgtcaaaTttgtgggaggggggtgaaactgaaatCacctgtccatgcacatccatgacttgtagcTttcactccccactgttcatgatatgatatgatgtggtcttcaGttccaagt
More
|
||||||||||
| CDS seq | atggatctttctggggcgcaGggcgagctgccgttgccaatgcacgccgcggcgtcgccgtaccttggcttgcaccatgaccaccaccaccatcatggcggcggcggcggtggagggatgaaTgggcggcacatgtcgccgcctacgcCAccGgcggcggcggaggagtcgaaggcggtggtggtggtgtcgtcgtcgtcggcggcggtggcggcggcgaGgtacagggagtgcctcaagaaccacgcggcggccatcggcggcagcgccacggacgggtgcggcgagttcatgcccggcGgcgaggaaggctcgctcgacgcgctccgctgctccgcctgcggctgccaccgcaacttccaccgcaaggagctcgacgccgccgccacgccgctccaccaccaccaccaactgctcggcgtcggcgcgcacccccgcggccacggccaccaccaccaccacctcctggtggcggcgctgccgccgccgacgcggatggtgatgccactgagcgccatgcacacgtcggagtcggacgacGccgcggcgcgccccggcggcggcggcgcggtggcggcgaggaagcggttccggaccaagttcacggcggagcagaaGgcgcggatgctggggttcgccgaggaggtcgggtGgcggctgcagaagctggaggacgccgtcgtgcagcgcttctgccaggaGgtcggcgtcaagcgccgcgtcctcaaGgtctggatgcacaacaacaagcacaccctcgcccgccgccacctccacccctcctccgccgccgccgccggagacGacgacgacggcgcgccgccgcaccccgaccccggcggcgcgagctcgccgccgccgccgCcgcaccacctccggctccagtaa
More
|
||||||||||
| Protein seq | MDLSGAQGELPLPMHAAASPYLGLHHDHHHHHGGGGGGGMNGRHMSPPTPPAAAEESKAVVVVSSSSAAVAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDAAATPLHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSESDDAAARPGGGGAVAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLKVWMHNNKHTLARRHLHPSSAAAAGDDDDGAPPHPDPGGASSPPPPPHHLRLQ |
||||||||||
| Function | Zinc-finger homeodomain protein 3 [UniProtKB/Swiss-Prot:Q2QW44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0006610 | OsLiXu_12g0006610.01 | Chr12 | 5340280 | 5342599 | + | NAM | ||
| CDS seq | atggatctttctggggcgcaGggcgagctgccgttgccaatgcacgccgcggcgtcgccgtaccttggcttgcaccatgaccaccaccaccatcatggcggcggcggcggtggagggatgaaTgggcggcacatgtcgccgcctacgcCAccGgcggcggcggaggagtcgaaggcggtggtggtggtgtcgtcgtcgtcggcggcggtggcggcggcgaGgtacagggagtgcctcaagaaccacgcggcggccatcggcggcagcgccacggacgggtgcggcgagttcatgcccggcGgcgaggaaggctcgctcgacgcgctccgctgctccgcctgcggctgccaccgcaacttccaccgcaaggagctcgacgccgccgccacgccgctccaccaccaccaccaactgctcggcgtcggcgcgcacccccgcggccacggccaccaccaccaccacctcctggtggcggcgctgccgccgccgacgcggatggtgatgccactgagcgccatgcacacgtcggagtcggacgacGccgcggcgcgccccggcggcggcggcgcggtggcggcgaggaagcggttccggaccaagttcacggcggagcagaaGgcgcggatgctggggttcgccgaggaggtcgggtGgcggctgcagaagctggaggacgccgtcgtgcagcgcttctgccaggaGgtcggcgtcaagcgccgcgtcctcaaGgtctggatgcacaacaacaagcacaccctcgcccgccgccacctccacccctcctccgccgccgccgccggagacGacgacgacggcgcgccgccgcaccccgaccccggcggcgcgagctcgccgccgccgccgCcgcaccacctccggctccagtaa
More
|
|||||||
| Protein seq | MDLSGAQGELPLPMHAAASPYLGLHHDHHHHHGGGGGGGMNGRHMSPPTPPAAAEESKAVVVVSSSSAAVAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDAAATPLHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSESDDAAARPGGGGAVAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLKVWMHNNKHTLARRHLHPSSAAAAGDDDDGAPPHPDPGGASSPPPPPHHLRLQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.225829 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0208900 | RBH | 0.690794 | 1.317138 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10630 | RBH | 0.487074 | 0.676307 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0208900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006780 | RBH | 0.000000 | 0.0 | 2.578249 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006860 | RBH | 0.159485 | 0.0 | 0.396078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006850 | RBH | 0.534998 | 1.378767 | 1.433113 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006750 | RBH | 0.165135 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006610 | RBH | 0.655912 | 0.0 | 2.120791 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0084700 | RBH | 10.7639395 | 0.164774 | 5.986274 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006570 | RBH | 0.135331 | 0.0 | 0.139002 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0090400 | RBH | 13.593233 | 0.0783265 | 41.4616205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006480 | RBH | 0.094677 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006740 | RBH | 0.114286 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006590 | RBH | 2.849405 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008540 | RBH | 0.000000 | 0.0 | 0.123627 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006510 | RBH | 0.384742 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006630 | RBH | 0.084901 | 0.0 | 1.301804 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006620 | RBH | 0.000000 | 0.0 | 0.578846 |
