Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0005280 | OGI:12010470 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:3998145-4003674 | ||||||||
| Gene Symbol | SDRLP-12 | ||||||||||
| DNA seq | agccgccggcgaggcgaaggcggcggcttcctccgcgactgcggctgcggccacgtcgtcgccggctcgccgccgtcggcagttgaggcgagcccggcacgacgccagtgcgccgccgctatctttgtcctccaccgcttgctcgcatgggcggcgctgtctccatccagcaccatctcacggcggcgccgtgtttgtggggggtgggaaatggggaatggccattcgcagcagggagcagactgacgaaatcccttcagattgggggtctctcttcttctagagttcgatttcctctttttatcagaacatgttcgttttctaatcttcggttttgaacaaaatgccttcgaattcagtttttattcggattccggattatcatctttgctacctgcagggtcttgagtttgtcagtggaggatacctggtttatagacgacagcattttgcagggcttccaaatacactgcccgcatagtttcagttgggaggaaataaatactgtgagcctcacttttctagtacaatctgcctggtataaatttacattttgagctgttattttgagtagtggtacatgttcttttcatcctgtcgtgcgggtggccagttgaattcctgaagccgaaaccttttttcctggcatgtttctgaagttagataaagctaaatgttcaacaccagaatgctgtttcactatgatagttattcttcatgctggtcatatgattatagttattctctcacgatgaccataagtttcgatcttgtgtctatcctttcagactttaagctatgccctaatgaacatgtcaagccatgttctttgttttaccagcagtttttgtcacccatcattagtttccatcacctatcttggtcaaaagttggaatccctaaggttgtgtaaagtctagcaagaagagatgatatcatgatttatatcttctcaaaagtggctaaaataacctattccattcatctttctccaaattgtttgattttttttcttggattgtatttgtttgaataatctatgtccatgatgtgtctgataactaataagatattgtctttgccttgatatttatggtattatcaagtgaccataaaaaggtaaaaaagatcgccaataaagtatgttagaggtggacgatgttcccctaaacttgcatgatcccacaaaccaatagagaaaactcgtgtttcctttagctgatgattgacacattgcatgtgtggaaagcctacaacttctcatctttgaagtcaaaaaatagttgttgacggtgatgagtgaactatatcatatattattgagaagacagtttatagtaatgccaaataatttgaaaagagtataattctttcttaattagtcttgtgccaggggtttgtgttgtttaactccaacttgatacaaaataatctgttagttacacacctaaatcatatactacctgatattgtgtgctctgttgtagtcaataagactttgttttattttgtgtttccacctatcatgaccatggccttcttgtctaatattttggtcttcggtcttatcttctaggatgcatggtgcctcccctgattcaggcttgcatacttgctatatggatttgagtggcctatatacatgcttgtcggggataatgattaatctgcactttatttgttgcatctatattgcagtcctgattcttgatcagcaatacctttgttgctgttagttctatctctgaagtctgaagaagaatattttctttgggatgctagatagcatgcttttcgttccatcaaattgatatttcattcagtagtctatagaaataacaggaactgcacaggcaccttcaaatgcccattgtaatgctggtgattagtctccgtgtgcagttttttttttcttttcatatacaattccatcacaatcctattacagggaaatgatggagtgttctttggtgtgcattttctttccttacaatgggtttatgtttgaatagctaaaatcgagatgcatcatttatttttcttaattcatgctaagtgtaaactttttttttctgtagcattttcctggacttgttgcactatcaattgaagaaactagtggagactgcaaaattatgttgtattaaattcaagttggattggccatctgatttttcattctactgttcaaaaaacttggttattcttcaaatgatctccttggaccttggggtgacttgatgacttcccagtgagattgtagtattgcactacatgtaatcataaaaaatgatatgccgaaatctaaatcattcgtcccaggtgagttatcttccttaaaaataccccaatatacccagatctagattgttatataatgttttagagagtaactgaatgcaaaagtacaccaataatgaaccatactaaaatacttgcataattgtcaattcataaacaataattaaggaaaaattaattggaacctatgtcaaattagataaaccaaattatcactggcacccacttttttaatgatattattactattctcaaacaagaaaaacatatattttccagcattctgaggtaatcatgtgcttggcccaaatattctccctaaatttataaatatataatagatttaagcaaacatatagtaagacctgaaatcttcaacttggtggactgccaaactgatcacgggtgacatctagtcatctatcataggatgaaaaaacagatgagagaaggaatatcatattggactgtattccaaggtaccccagttgattgaattattaatcttaattaggtacctaatcacttgccatgtgcttgttcatattgtttaattgcaattgtacagaactatggaactatgcatacatgcaactgattcctttcctcctcctgcatgatacagtagcagcattttttctccttggatcttgctctttgaaagcatatcatgccaagctctttattgatactaaacctcatattcttttcctttctggctcctatttctgcagtggctggtcatgctaattacctgcataaagggtcttccctctccgcgaagcatgcctctgatgtactgcggtcaacggatggcaccttctcgttcggcttctacaacctttcatccactgtgttcaccttgtcaatctggttcaccaattcagctgacaagaccattgcctggagcgcaaatcaagaccgccctgtgcatgagagcgggtcgaaagtcatgctgaacaaggatggaagcatggttctcacagactatgatggcacggttgtctggcaaatcagtagctctgcagaagctgtccgtgccgagctcatggactccgggaaccttgtggtgaaggatcaaggtggaagcatcctatggcaaagctttgatcatccaaccaacactctgctcccgatgcagcctgttacagccaccgcaaagctggtatcaactgatccctcacacccaacaagttactacactttacggtttgatgatcggtacgttttatcacttgcttatgatggaccagacatctttaacctctactggcctaaccctgaccagagtagctggacaaactataggatctcttataaccgtagcaggagtggtgttcttgataagctggggaaatttatggcgagcgataacacaactttctatgcctcagattggggtttggagattaagaggagactcacattggactatgatggaaatcttcggctttacagcctgaatgagtcagatgggagctggtacaattcttggatggctttctcccaaccctgtgaaatacacggcctttgtggttggaacgggatatgtgcatacacaccaaagattggctgctcttgccctcctggttatgtggtcagtgatcctggtgattggagcagaggatgcaagccagcattcaacctcacctgcagcaatgatggccagaaaatgagctttgtgcgcattcctcagaccgacttctggggctttgatatgaactatgtcatgtcaacatccctgcacgcttgtagggcaatgtgtttggcgagttgctcctgtgtagcattcgtgtacaaagtgtacccaaatggctgcttcttgaagtctgatctcttcaatggcaagacagttccaggataccctggtgcagcatatatcaaggttcctcagagctttctgtcctggtcacaaacacatgtttctgaacttgccaatcgccatgtttgcaatgcatcaaaaacacaaatgttcaattacgctacacagagcaacaaaggaacgggcacgatttggtactactactactgtttcctggctgcattctttcttgtggagctctgcttcattgcttttggctggtggttcatggcaaaaacacactcagcacgatcggcggtatgggcagcggaggaaggctacagggttgtaacagatcatttccgtaggtttacctacaaagaattgcggagggctactaggaatttcaaagatgagcttggccgtgggcgatatggctctgtgtacaaggggattctagatgacgatcgcatagttgccatcaagaagctcaaagatgtgaagcaaggcgaggctgagtttcagacagaggtaagtgtgattggaagcatctaccatatgaatctggtgagagtaatgggtgtatgttctgagggaagtcaccggctgttggtctatgagtatgtagagaacggttcattggccatgttcttgtttggtagcaaggaactgttacagtggcagcataggtacaagattgcagttggtgtggccaaagggctagcttaccttcaccatgagtgtatggattggatcatccattgtgacgtaaagcctgagaacatacttctcgaccaggatttcgagcccaaaatcagcgatttcgggttcgcgaagctgctacagagaaaccagactgatcccaacatgtcaaagatccgaggaactaggggttacatcgctccggaatgggtttctggtgttcccataactgaaaaggttgatgtgtacagttacggagtggtgcttctggagttagtcatggggcttcgaatgtctgagctaccagcaaatggcagtgcagatgaaggtgctgcattgaggcagttagtgtggacagtaacagagaagattaaaaccggtgaccaaacattgatcgatggtattgttgatcctagattgaatggcaactttgtgcgctccgaggtgctactggtgctggagtttgctgttctgtgcctggagaaagaaaggaaccaaagaccaaacatgaatcatgtggtgcagaagttcctttcgtatgaatgaattcgacaattttccatgtccctgtcgcctgtttaccttaaatgaaagccataatgcagttttataattttcgtactacttggatgcaatggaaacaaatgtttgatgtatcactcttgttcttgtattacacattaattcaagatatgatcctgtggttagttgttttgatgagatcct
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| CDS seq | atgccgaaatctaaatcattcgtcccagtggctggtcatgctaattacctgcataaagggtcttccctctccgcgaagcatgcctctgatgtactgcggtcaacggatggcaccttctcgttcggcttctacaacctttcatccactgtgttcaccttgtcaatctggttcaccaattcagctgacaagaccattgcctggagcgcaaatcaagaccgccctgtgcatgagagcgggtcgaaagtcatgctgaacaaggatggaagcatggttctcacagactatgatggcacggttgtctggcaaatcagtagctctgcagaagctgtccgtgccgagctcatggactccgggaaccttgtggtgaaggatcaaggtggaagcatcctatggcaaagctttgatcatccaaccaacactctgctcccgatgcagcctgttacagccaccgcaaagctggtatcaactgatccctcacacccaacaagttactacactttacggtttgatgatcggtacgttttatcacttgcttatgatggaccagacatctttaacctctactggcctaaccctgaccagagtagctggacaaactataggatctcttataaccgtagcaggagtggtgttcttgataagctggggaaatttatggcgagcgataacacaactttctatgcctcagattggggtttggagattaagaggagactcacattggactatgatggaaatcttcggctttacagcctgaatgagtcagatgggagctggtacaattcttggatggctttctcccaaccctgtgaaatacacggcctttgtggttggaacgggatatgtgcatacacaccaaagattggctgctcttgccctcctggttatgtggtcagtgatcctggtgattggagcagaggatgcaagccagcattcaacctcacctgcagcaatgatggccagaaaatgagctttgtgcgcattcctcagaccgacttctggggctttgatatgaactatgtcatgtcaacatccctgcacgcttgtagggcaatgtgtttggcgagttgctcctgtgtagcattcgtgtacaaagtgtacccaaatggctgcttcttgaagtctgatctcttcaatggcaagacagttccaggataccctggtgcagcatatatcaaggttcctcagagctttctgtcctggtcacaaacacatgtttctgaacttgccaatcgccatgtttgcaatgcatcaaaaacacaaatgttcaattacgctacacagagcaacaaaggaacgggcacgatttggtactactactactgtttcctggctgcattctttcttgtggagctctgcttcattgcttttggctggtggttcatggcaaaaacacactcagcacgatcggcggtatgggcagcggaggaaggctacagggttgtaacagatcatttccgtaggtttacctacaaagaattgcggagggctactaggaatttcaaagatgagcttggccgtgggcgatatggctctgtgtacaaggggattctagatgacgatcgcatagttgccatcaagaagctcaaagatgtgaagcaaggcgaggctgagtttcagacagaggtaagtgtgattggaagcatctaccatatgaatctggtgagagtaatgggtgtatgttctgagggaagtcaccggctgttggtctatgagtatgtagagaacggttcattggccatgttcttgtttggtagcaaggaactgttacagtggcagcataggtacaagattgcagttggtgtggccaaagggctagcttaccttcaccatgagtgtatggattggatcatccattgtgacgtaaagcctgagaacatacttctcgaccaggatttcgagcccaaaatcagcgatttcgggttcgcgaagctgctacagagaaaccagactgatcccaacatgtcaaagatccgaggaactaggggttacatcgctccggaatgggtttctggtgttcccataactgaaaaggttgatgtgtacagttacggagtggtgcttctggagttagtcatggggcttcgaatgtctgagctaccagcaaatggcagtgcagatgaaggtgctgcattgaggcagttagtgtggacagtaacagagaagattaaaaccggtgaccaaacattgatcgatggtattgttgatcctagattgaatggcaactttgtgcgctccgaggtgctactggtgctggagtttgctgttctgtgcctggagaaagaaaggaaccaaagaccaaacatgaatcatgtggtgcagaagttcctttcgtatgaatga
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| Protein seq | MPKSKSFVPVAGHANYLHKGSSLSAKHASDVLRSTDGTFSFGFYNLSSTVFTLSIWFTNSADKTIAWSANQDRPVHESGSKVMLNKDGSMVLTDYDGTVVWQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPTNTLLPMQPVTATAKLVSTDPSHPTSYYTLRFDDRYVLSLAYDGPDIFNLYWPNPDQSSWTNYRISYNRSRSGVLDKLGKFMASDNTTFYASDWGLEIKRRLTLDYDGNLRLYSLNESDGSWYNSWMAFSQPCEIHGLCGWNGICAYTPKIGCSCPPGYVVSDPGDWSRGCKPAFNLTCSNDGQKMSFVRIPQTDFWGFDMNYVMSTSLHACRAMCLASCSCVAFVYKVYPNGCFLKSDLFNGKTVPGYPGAAYIKVPQSFLSWSQTHVSELANRHVCNASKTQMFNYATQSNKGTGTIWYYYYCFLAAFFLVELCFIAFGWWFMAKTHSARSAVWAAEEGYRVVTDHFRRFTYKELRRATRNFKDELGRGRYGSVYKGILDDDRIVAIKKLKDVKQGEAEFQTEVSVIGSIYHMNLVRVMGVCSEGSHRLLVYEYVENGSLAMFLFGSKELLQWQHRYKIAVGVAKGLAYLHHECMDWIIHCDVKPENILLDQDFEPKISDFGFAKLLQRNQTDPNMSKIRGTRGYIAPEWVSGVPITEKVDVYSYGVVLLELVMGLRMSELPANGSADEGAALRQLVWTVTEKIKTGDQTLIDGIVDPRLNGNFVRSEVLLVLEFAVLCLEKERNQRPNMNHVVQKFLSYE |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0005280 | OsLiXu_12g0005280.01 | Chr12 | 3998627 | 4003674 | + | NAM | ||
| CDS seq | atgccgaaatctaaatcattcgtcccagtggctggtcatgctaattacctgcataaagggtcttccctctccgcgaagcatgcctctgatgtactgcggtcaacggatggcaccttctcgttcggcttctacaacctttcatccactgtgttcaccttgtcaatctggttcaccaattcagctgacaagaccattgcctggagcgcaaatcaagaccgccctgtgcatgagagcgggtcgaaagtcatgctgaacaaggatggaagcatggttctcacagactatgatggcacggttgtctggcaaatcagtagctctgcagaagctgtccgtgccgagctcatggactccgggaaccttgtggtgaaggatcaaggtggaagcatcctatggcaaagctttgatcatccaaccaacactctgctcccgatgcagcctgttacagccaccgcaaagctggtatcaactgatccctcacacccaacaagttactacactttacggtttgatgatcggtacgttttatcacttgcttatgatggaccagacatctttaacctctactggcctaaccctgaccagagtagctggacaaactataggatctcttataaccgtagcaggagtggtgttcttgataagctggggaaatttatggcgagcgataacacaactttctatgcctcagattggggtttggagattaagaggagactcacattggactatgatggaaatcttcggctttacagcctgaatgagtcagatgggagctggtacaattcttggatggctttctcccaaccctgtgaaatacacggcctttgtggttggaacgggatatgtgcatacacaccaaagattggctgctcttgccctcctggttatgtggtcagtgatcctggtgattggagcagaggatgcaagccagcattcaacctcacctgcagcaatgatggccagaaaatgagctttgtgcgcattcctcagaccgacttctggggctttgatatgaactatgtcatgtcaacatccctgcacgcttgtagggcaatgtgtttggcgagttgctcctgtgtagcattcgtgtacaaagtgtacccaaatggctgcttcttgaagtctgatctcttcaatggcaagacagttccaggataccctggtgcagcatatatcaaggttcctcagagctttctgtcctggtcacaaacacatgtttctgaacttgccaatcgccatgtttgcaatgcatcaaaaacacaaatgttcaattacgctacacagagcaacaaaggaacgggcacgatttggtactactactactgtttcctggctgcattctttcttgtggagctctgcttcattgcttttggctggtggttcatggcaaaaacacactcagcacgatcggcggtatgggcagcggaggaaggctacagggttgtaacagatcatttccgtaggtttacctacaaagaattgcggagggctactaggaatttcaaagatgagcttggccgtgggcgatatggctctgtgtacaaggggattctagatgacgatcgcatagttgccatcaagaagctcaaagatgtgaagcaaggcgaggctgagtttcagacagaggtaagtgtgattggaagcatctaccatatgaatctggtgagagtaatgggtgtatgttctgagggaagtcaccggctgttggtctatgagtatgtagagaacggttcattggccatgttcttgtttggtagcaaggaactgttacagtggcagcataggtacaagattgcagttggtgtggccaaagggctagcttaccttcaccatgagtgtatggattggatcatccattgtgacgtaaagcctgagaacatacttctcgaccaggatttcgagcccaaaatcagcgatttcgggttcgcgaagctgctacagagaaaccagactgatcccaacatgtcaaagatccgaggaactaggggttacatcgctccggaatgggtttctggtgttcccataactgaaaaggttgatgtgtacagttacggagtggtgcttctggagttagtcatggggcttcgaatgtctgagctaccagcaaatggcagtgcagatgaaggtgctgcattgaggcagttagtgtggacagtaacagagaagattaaaaccggtgaccaaacattgatcgatggtattgttgatcctagattgaatggcaactttgtgcgctccgaggtgctactggtgctggagtttgctgttctgtgcctggagaaagaaaggaaccaaagaccaaacatgaatcatgtggtgcagaagttcctttcgtatgaatga
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| Protein seq | MPKSKSFVPVAGHANYLHKGSSLSAKHASDVLRSTDGTFSFGFYNLSSTVFTLSIWFTNSADKTIAWSANQDRPVHESGSKVMLNKDGSMVLTDYDGTVVWQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPTNTLLPMQPVTATAKLVSTDPSHPTSYYTLRFDDRYVLSLAYDGPDIFNLYWPNPDQSSWTNYRISYNRSRSGVLDKLGKFMASDNTTFYASDWGLEIKRRLTLDYDGNLRLYSLNESDGSWYNSWMAFSQPCEIHGLCGWNGICAYTPKIGCSCPPGYVVSDPGDWSRGCKPAFNLTCSNDGQKMSFVRIPQTDFWGFDMNYVMSTSLHACRAMCLASCSCVAFVYKVYPNGCFLKSDLFNGKTVPGYPGAAYIKVPQSFLSWSQTHVSELANRHVCNASKTQMFNYATQSNKGTGTIWYYYYCFLAAFFLVELCFIAFGWWFMAKTHSARSAVWAAEEGYRVVTDHFRRFTYKELRRATRNFKDELGRGRYGSVYKGILDDDRIVAIKKLKDVKQGEAEFQTEVSVIGSIYHMNLVRVMGVCSEGSHRLLVYEYVENGSLAMFLFGSKELLQWQHRYKIAVGVAKGLAYLHHECMDWIIHCDVKPENILLDQDFEPKISDFGFAKLLQRNQTDPNMSKIRGTRGYIAPEWVSGVPITEKVDVYSYGVVLLELVMGLRMSELPANGSADEGAALRQLVWTVTEKIKTGDQTLIDGIVDPRLNGNFVRSEVLLVLEFAVLCLEKERNQRPNMNHVVQKFLSYE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0005280 | OsLiXu_12g0005280.02 | Chr12 | 3998145 | 4003673 | + | IsoSeq | ||
| CDS seq | atggcaagacagttccaggataccctggtgcagcatatatcaaggttcctcagagctttctgtcctggtcacaaacacatgtttctgaacttgccaatcgccatgtttgcaatgcatcaaaaacacaaatgttcaattacgctacacagagcaacaaaggaacgggcacgatttggtactactactactgtttcctggctgcattctttcttgtggagctctgcttcattgcttttggctggtggttcatggcaaaaacacactcagcacgatcggcggtatgggcagcggaggaaggctacaggg
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| Protein seq | MARQFQDTLVQHISRFLRAFCPGHKHMFLNLPIAMFAMHQKHKCSITLHRATKERARFGTTTTVSWLHSFLWSSASLLLAGGSWQKHTQHDRRYGQRRKATG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0177800 | RBH | 0.196336 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07800 | RBH | 0.119467 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0177800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005130 | RBH | 0.0 | 3.398088 | 0.229703 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005330 | RBH | 0.000000 | 0.0 | 0.346407 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005390 | RBH | 0.0 | 0.807486 | 0.479606 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005210 | RBH | 0.0 | 0.021364 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005310 | RBH | 0.0 | 1.245630 | 1.206069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0065500 | RBH | 0.2858075 | 2.2979985 | 1.592094 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005290 | RBH | 0.0 | 0.166467 | 0.142396 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0069600 | RBH | 0.4841105 | 1.0740545 | 6.3613845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005370 | RBH | 0.066015 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005310 | RBH | 0.0 | 4.570574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005250 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005130 | RBH | 0.0 | 0.321905 | 0.512006 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005310 | RBH | 0.0 | 0.0 | 0.284079 |
