Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0004380 | OGI:12008410 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:3230459-3234212 | ||||||||
| Gene Symbol | RSG, OsbZIP84, BZIP84 | ||||||||||
| DNA seq | acaccacgcgtctccccccaccaactagctctctctctctctctctctctctcgcgccgccgctacctcgccgcgccgccgcgggtggggagatttgaccggcgttgactccgggatggacgggcggttcccgctgccgccggcgagcggaggggggcgggggcaccaccggcgggcgcactcggagacgttcctgcggctgcccgacgcggacctcctcctcgacccggagggggacttctccttctccgacctcgacttcccctccctctccgacgactccccggccatctccgacccgaccccgccgccgccgccgccgatggctgcgacccccgcgccggcgccgcggccaccgggtggggcgcacatgaggagcctctccctcgacaccgccttcttcgagggtttctcgttgcagggtgggggaggaggaggaggaggaggaggaggaggagggagtgggggaagtggtgggcataagaggagcgggtcgatggatggggtcaactcgccgttcgagggtgagtcggcgctctccggtgggctaccggactacgcgaagaaggccatgcccgcggagaggatcgccgagctcgcgctcatcgaccccaagcgcgcaaagaggtgaggaaatcgcttgctgcttcctctactccattttgagttcagcaatttctagatccgcagggatgtgccttttgccccaatcttgtacagtgatactgcgatttcccatttcgaagaatatagttggagtcagtagtgggattgctgctgttcttggtgtttcctttcttgatctgggctatctgtgccttgcttgatttgtgatgtaattggggagatgtattggggcttgttgatttaggttaagcttgtgatggcgcttgtgtgcagaattctggcgaacaggcagtcggctgcaaggtccaaggaaaggaagatcaagtacactagcgagctggagaggaaggtgcagacactgcagaccgaggccaccacgctgtctgcacagctcacgcttctccaggtatggaactttgtttattccgagcgccagataagcctcttatattgtcttatctaatcagcttagtttgttagtcaattgttttgtttgacatgtattagttgtgcaaagttagagtaggttacacgaaactttaatgttttgactcaatgattgtcatgcatgtgaagaactgctgtaagcaaagctactgcttgaacctttttatgtttttagaagcataatagtatgttgttgtatcttgtccctttccttctagctaaagcggcttattgattgtttcaagcatgtgtgctaagttgtggatcttacttggggtgtcaaaacgagctatttgtgttactatgataatgtgttgaagaaagtgtgcaggaataacacgtaataatagcatgtagctttgcattgcataacattctatgaatttcattttttttatacaattctgttgtgggccagctttatttaaaaccaaataacagtttataagttagttcacaataaataatttgtctgcattgaatgcggcagttcgtttccttttgggttagcaacttagtgtcctacagtaaacttccagtatctgagctcagagctgcagaaagtttaggaagtggaatttttaaagcatggtagtcactagaatggaaatgtacaaataagaactttgttagtagaccatttattctacacatattttaggacacttcataagctaaagcataacttagttcttttttatttcaaactgatgttccttatggcaccttatgcatctagcacctgaatttattagattgatagttgcctagatatatgtggctttgtaaaaactagtgatagcactagtattccatggatgtcaaatggacagtgagatgtatggtaaatcatttttttgttagtaatatcaagatattctgaattttgttatggcactttgcatggtgcacaatgtaggacaggctgtagtgtatgaacacaatggagaacataataatagatttgacaagagcacaacattttttttcctttatcattaccttgttgcctgtgtaattgttgtagatgcgacaataaaagtaggaattgaagcacctaatggtttaagaggtataagtatgtttgtagcgtgaacgatcgatcgctcaccaaaaattgggctagtgatgaaccattttagagtgcagtttgattgatggaatcagacgggtcatgttaggatggagaaataagtgaccacagattgtaacatatgatgtctcactttcaagaaaacatgctagtgcttatcatataattagaacaaggcagtcatccagaaatcccatgaataaatgatattctaaaatgcgcctacttttatcatgatccttctgaagtcagcttattttttgtgacgataacagacatttttgctttatcttttttgagcaatgaaataatgtcagtggcttgtatgttctttggaatcttatattccttcaaccctttatgcagttctgtttgttcattgtataatttatttgatgagattcagagaactagagtgccatctaattatttatttccctatgaatacatagtttttttttacttaatgttgtcaacttttacgtacagaggatatggatgctaacttaatattgctcattttagtacataatttgttgcacgtagcatttgcgtaaatttagtccgtagattgtcaagctttgaatcatcctattgcacaacaccattttttgcatgctgctgatagtatctggtaggcaaattactcgccaatcctgtaagccaacagtttcttttgttctgtttgtgtatgtgatgtgtgccatctggtagtcttgaatctgattttttgcaattcacttgaaacccagagggatacatctggtttaactgccgagaatagagagctcaagctacggttgcagtccatggaagagcaagctaaactacgtgatggtatgcccttatcttttgttacttcatcatgtagcctttagtatgttgtgcaatactactacatggttgcctatgaagataaagtttcaaagcccaataaaatgtttgattctattggcatatatgttggtctgttgctctgttagtaagacaaaaattggacgtgctttgttttttctttgcccatgaagtatgttatggaaaaaatatccttctcatgcagctctgaatgaagctctgcgagaagaagttcagcgacttaagatagcagcagggcaagctccaaacatgaacgggaatcccttcaatggtggactccaacagcagattccgccctattacacgcaacagcagcagcagcagcagcaacagatgccttatttaggcggccaccatgctcagcaacgccatccaagccatcagcagagctcatcaaatggcggccagtcgctgagtggtcagtccctaaacgactccatggatttcatgtgaggagaagaaactcggggcccctattaaaccatataccaactgcagctcagcattgtaaagatagctaatgtacaatgtaatgcatatgaatcattgaatagggtagctagccgttctttgtaccagtaaacagaagtaattcttgtatgacataatcctccctttccccctttgttcattcctggattaatgcctagactgagttaactatgttaaccatttaacacttgtcttgtaaagtggtcgtttgtaacagcc
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| CDS seq | atggacgggcggttcccgctgccgccggcgagcggaggggggcgggggcaccaccggcgggcgcactcggagacgttcctgcggctgcccgacgcggacctcctcctcgacccggagggggacttctccttctccgacctcgacttcccctccctctccgacgactccccggccatctccgacccgaccccgccgccgccgccgccgatggctgcgacccccgcgccggcgccgcggccaccgggtggggcgcacatgaggagcctctccctcgacaccgccttcttcgagggtttctcgttgcagggtgggggaggaggaggaggaggaggaggaggaggagggagtgggggaagtggtgggcataagaggagcgggtcgatggatggggtcaactcgccgttcgagggtgagtcggcgctctccggtgggctaccggactacgcgaagaaggccatgcccgcggagaggatcgccgagctcgcgctcatcgaccccaagcgcgcaaagagaattctggcgaacaggcagtcggctgcaaggtccaaggaaaggaagatcaagtacactagcgagctggagaggaaggtgcagacactgcagaccgaggccaccacgctgtctgcacagctcacgcttctccagagggatacatctggtttaactgccgagaatagagagctcaagctacggttgcagtccatggaagagcaagctaaactacgtgatgctctgaatgaagctctgcgagaagaagttcagcgacttaagatagcagcagggcaagctccaaacatgaacgggaatcccttcaatggtggactccaacagcagattccgccctattacacgcaacagcagcagcagcagcagcaacagatgccttatttaggcggccaccatgctcagcaacgccatccaagccatcagcagagctcatcaaatggcggccagtcgctgagtggtcagtccctaaacgactccatggatttcatgtga
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| Protein seq | MDGRFPLPPASGGGRGHHRRAHSETFLRLPDADLLLDPEGDFSFSDLDFPSLSDDSPAISDPTPPPPPPMAATPAPAPRPPGGAHMRSLSLDTAFFEGFSLQGGGGGGGGGGGGGSGGSGGHKRSGSMDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNGNPFNGGLQQQIPPYYTQQQQQQQQQMPYLGGHHAQQRHPSHQQSSSNGGQSLSGQSLNDSMDFM |
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| Function | Transcription factor VIP1 [UniProtKB/Swiss-Prot:Q9MA75] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0004380 | OsLiXu_12g0004380.01 | Chr12 | 3230459 | 3234212 | + | NAM | ||
| CDS seq | atggacgggcggttcccgctgccgccggcgagcggaggggggcgggggcaccaccggcgggcgcactcggagacgttcctgcggctgcccgacgcggacctcctcctcgacccggagggggacttctccttctccgacctcgacttcccctccctctccgacgactccccggccatctccgacccgaccccgccgccgccgccgccgatggctgcgacccccgcgccggcgccgcggccaccgggtggggcgcacatgaggagcctctccctcgacaccgccttcttcgagggtttctcgttgcagggtgggggaggaggaggaggaggaggaggaggaggagggagtgggggaagtggtgggcataagaggagcgggtcgatggatggggtcaactcgccgttcgagggtgagtcggcgctctccggtgggctaccggactacgcgaagaaggccatgcccgcggagaggatcgccgagctcgcgctcatcgaccccaagcgcgcaaagagaattctggcgaacaggcagtcggctgcaaggtccaaggaaaggaagatcaagtacactagcgagctggagaggaaggtgcagacactgcagaccgaggccaccacgctgtctgcacagctcacgcttctccagagggatacatctggtttaactgccgagaatagagagctcaagctacggttgcagtccatggaagagcaagctaaactacgtgatgctctgaatgaagctctgcgagaagaagttcagcgacttaagatagcagcagggcaagctccaaacatgaacgggaatcccttcaatggtggactccaacagcagattccgccctattacacgcaacagcagcagcagcagcagcaacagatgccttatttaggcggccaccatgctcagcaacgccatccaagccatcagcagagctcatcaaatggcggccagtcgctgagtggtcagtccctaaacgactccatggatttcatgtga
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| Protein seq | MDGRFPLPPASGGGRGHHRRAHSETFLRLPDADLLLDPEGDFSFSDLDFPSLSDDSPAISDPTPPPPPPMAATPAPAPRPPGGAHMRSLSLDTAFFEGFSLQGGGGGGGGGGGGGSGGSGGHKRSGSMDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNGNPFNGGLQQQIPPYYTQQQQQQQQQMPYLGGHHAQQRHPSHQQSSSNGGQSLSGQSLNDSMDFM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.938212 | 0.0 | 1.562903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0162500 | RBH | 1.837890 | 4.678892 | 4.285838 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06520 | RBH | 1.155875 | 2.926659 | 1.026030 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0162500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004170 | RBH | 0.180228 | 0.000000 | 4.882127 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004410 | RBH | 0.187678 | 6.250517 | 2.668464 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004400 | RBH | 2.412394 | 11.493473 | 6.451715 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004240 | RBH | 0.312383 | 0.429362 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004420 | RBH | 10.952332 | 8.567234 | 10.654133 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0053900 | RBH | 9.907418 | 22.0419685 | 26.2320645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004410 | RBH | 0.414489 | 0.676126 | 0.678886 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0058200 | RBH | 10.839297 | 24.611449 | 19.2422045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004190 | RBH | 0.262663 | 0.512883 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004420 | RBH | 1.063357 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004420 | RBH | 5.029033 | 21.218546 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004090 | RBH | 0.440167 | 0.0 | 0.223939 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004310 | RBH | 0.581959 | 6.649809 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004230 | RBH | 0.289445 | 2.276476 | 4.210552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004450 | RBH | 1.816668 | 15.684161 | 8.350936 |
