Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0003980 | OGI:12007550 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:2854912-2856326 | ||||||||
| Gene Symbol | osZIP-2b | ||||||||||
| DNA seq | cccacggcgagcagccagatgccaagatcctccccgcggctactcctcccatgtcggacgaccacagcggcggcggaggcgagcagcggcaatgccggcgagggttcgcggtggacgtggtggagctcggtgcggccctggctctggccgacatggccggcgccgccgtcaaaccggccatgcagctgcagctgcagccgaccgccgctcaggaggaggacgaggagatggcgaccacgaggctgagccttcagctcggcaacaacgtcggcagcatcatccagtcctcctcctgctccagcagcggctccagcgccggcctccccgcgccaccgccgccgccgccgccggccaccgcctacggcaccaagcccctccacatgctcaccgaggtaactgaaactgaagccaatgacatcgctcgcctatcaaactgaaactgaaactgaaactgaagctggtgaaatcgcctagctgcaaatctatcctgctttaattaatttctcctacaaatttgcaggaggagaaggaggcgaagcggctgcggcgagtgctcgccaaccgggaatccgcacgccaaaccatactccgccgtcaggtgatccgatctgctcataaatagttggaaattgcacaaactgtactccaaattgctgcgactgttgggtgtcaatataatcagtgtttctcctggactatcaatttcaggctattagagatgaactggcaagaaaggtcgcagatctgtcaacacagaatgagagcatgaagaaggtgagcgaattagacctgacaagatcaacagttgtatcttttatgtagcttaagctggcaattaacagtaatgatgttgtgtttgggggtgcaggagagggagacagtgatgcaggagtacctctcactgaaggagacaaacaagcagctcaaagaacaggcacagcatcatctttcgctttccttgttctaattaatctcttagtagtataatcttcttcTttttttgttctcttttactacaaaattattattactcctaccattctgaggccaaagagagcccaagagaatctactctactctactctaccatgttccaaatccaaacctccagttactttaatccctaatcccttttctcttttacttgtactacaaattaagctaagtaccattctgagttaaggccaaattaaagagaatctactagcatgttcctccatttgccacatgactgcactttactgctgctactggtcctagtagtggtcaaatcaatttggccattgctgtacggctgtagctagctgctggcgaattgggaactgaaaatgtttttattggatgctctggcacttgtgtagtgctgtgtatgtgccacactgacatctgtaatggatataaccattttttcttcc
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| CDS seq | atgtcggacgaccacagcggcggcggaggcgagcagcggcaatgccggcgagggttcgcggtggacgtggtggagctcggtgcggccctggctctggccgacatggccggcgccgccgtcaaaccggccatgcagctgcagctgcagccgaccgccgctcaggaggaggacgaggagatggcgaccacgaggctgagccttcagctcggcaacaacgtcggcagcatcatccagtcctcctcctgctccagcagcggctccagcgccggcctccccgcgccaccgccgccgccgccgccggccaccgcctacggcaccaagcccctccacatgctcaccgaggaggagaaggaggcgaagcggctgcggcgagtgctcgccaaccgggaatccgcacgccaaaccatactccgccgtcaggctattagagatgaactggcaagaaaggtcgcagatctgtcaacacagaatgagagcatgaagaaggagagggagacagtgatgcaggagtacctctcactgaaggagacaaacaagcagctcaaagaacaggcacagcatcatctttcgctttccttgttctaa
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| Protein seq | MSDDHSGGGGEQRQCRRGFAVDVVELGAALALADMAGAAVKPAMQLQLQPTAAQEEDEEMATTRLSLQLGNNVGSIIQSSSCSSSGSSAGLPAPPPPPPPATAYGTKPLHMLTEEEKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKKERETVMQEYLSLKETNKQLKEQAQHHLSLSLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0003980 | OsLiXu_12g0003980.01 | Chr12 | 2854912 | 2856326 | + | NAM | ||
| CDS seq | atgtcggacgaccacagcggcggcggaggcgagcagcggcaatgccggcgagggttcgcggtggacgtggtggagctcggtgcggccctggctctggccgacatggccggcgccgccgtcaaaccggccatgcagctgcagctgcagccgaccgccgctcaggaggaggacgaggagatggcgaccacgaggctgagccttcagctcggcaacaacgtcggcagcatcatccagtcctcctcctgctccagcagcggctccagcgccggcctccccgcgccaccgccgccgccgccgccggccaccgcctacggcaccaagcccctccacatgctcaccgaggaggagaaggaggcgaagcggctgcggcgagtgctcgccaaccgggaatccgcacgccaaaccatactccgccgtcaggctattagagatgaactggcaagaaaggtcgcagatctgtcaacacagaatgagagcatgaagaaggagagggagacagtgatgcaggagtacctctcactgaaggagacaaacaagcagctcaaagaacaggcacagcatcatctttcgctttccttgttctaa
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| Protein seq | MSDDHSGGGGEQRQCRRGFAVDVVELGAALALADMAGAAVKPAMQLQLQPTAAQEEDEEMATTRLSLQLGNNVGSIIQSSSCSSSGSSAGLPAPPPPPPPATAYGTKPLHMLTEEEKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKKERETVMQEYLSLKETNKQLKEQAQHHLSLSLF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0601800 | SBH | 1.465263 | 1.374330 | 0.962354 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06010 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0601800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003770 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004010 | RBH | 0.000000 | 0.299258 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004020 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0048800 | RBH | 0.01815 | 0.01715 | 4.620058 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0053100 | RBH | 0.056525 | 0.0200685 | 1.191822 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003940 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003860 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004070 | RBH | 0.0 | 0.0 | 0.0 |
