Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0002840 | OGI:12005100 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:2011984-2017957 | ||||||||
| Gene Symbol | IPMS2, OsIPMS2, - | ||||||||||
| DNA seq | gtcttcttcgccgcaaaaaccacgccgccatcacagcattcgtgcatcccacgaaacccccgttgtcatgtccagataagagctccacctctgactcacacacacatcaccgagaagcagagcaagtgcatctccctctcccaccatttgattcgattcccctaaacccccgagtcgtcgacgccacaaaccccggcgaccaccatggcctcctccctcctctcctccccaaaaccctcctccttctcctccgcaaaccccacctccactccacgcccacgcgcccaaactctctcccccttccgcgccgccgccccacgcttctcccatggcctcgccaccgccgccgccgccgcaaaccctagcgcctcccgccgctgctaccaccgcgccttcgcccgccccgtccgggcgtccatggcgcagccgcggcgcccggagtacgtccccaaccgcatcgacgaccccaactacgtccgcatcttcgacaccaccctccgcgacggggagcagtcccccggggccaccatgaccagcgccgagaagctcgtcgtcgcgcgccagctcgcccgcctcggcgtcgacatcatcgaggccgggttcccggcctcctcccccgacgacctcgacgccgtgcgctccatcgccatcgaggtcgggaacacgcccgtcggggaggacggccacgtgccggtcatctgtggcctctcgagatgcaataagcgagacattgatgctgcctgggaggccgtgcggcacgcgcggcggccgcgcatccacaccttcattgccaccagcgagatccatatgcagcacaagctaaggaagacgcccgagcaggtggtggccattgccaaggaaatggtggcctacgcccgcagcctaggctgccctgatgtcgagttcagccctgaagacgctggcaggtatcacttctaattgtaaatttgttcaacctttaggtccaatttttaaaattgtaagccttaaaatgaccaaaagtttgatacctggagtagtaattacaatgttggttggaaccggcatctgacctattggttggagtaataatctagatgtctgaaagtattgtgaatgaaagaggtccatccaactattgggaagctaggttgattgaggcaaagcgatatatgcttagtatatcaagtacttaaatttactttggtctggagattaagtactatgcatcatgtataccctactttgaacacattcatcattgactcagcgatgctggcatgtatcacttctaactgcatatttgtttgatttttaggccaatatttttaaactgtaagccttaaaatgaccaaaagtttcatatctggagtagtaattacaatgtggtttggaactggcatctgacttattagctaataatctagatgttggaaagtacaatgaatgaaagaggtctatccaacttttaattgcaaatttgtaatcattaggttacttttaaaatagtcagcgttgaaatgtccaacaatttcagtaattataatatgggttggaattgacaccatacctagtaatctatatgcctaagtactgtgcatgtaagaggtccatccaactttagtgaagtggggttgattttgaagcgatgtggtgtatgcttagttgcttactatcaagtactgaatttactttggtctggaaagggaagtattatgtatattgtatcttgaataccttcatccttgtactgctggtagatatctacaatatgtaaggagttctagtagtaaatcaaagagaatgctagttgccagctactaaaattttgtggttgtgttcatctttaaatctacacacgaagcttattgttgcatatcatttactgtacattctttgctttcaaacatgttggcgcaaaaggaatgcctaaacattagctcatgccaagctattatctactccctccattttttaatagatgacgccgttgactttttctcacatgtttgaccattcgtcttattcaaaaattttatgcaaatgtataagatattaatcacacttaaagtactatgagtgataaaacaactcataacaaaataaattataattacgtaaattttttgaataagacgaatggtcaaacatgtgagaaaaagtcaatggcgtcatctattaaaaaacggaggtagtatgttttattagtcacaatcaattagcctccttttttatgcgcaaaaggctgtggcatgatatgattcactctgtcttgtaggtcaaacagagagtttctatatcatatactagaggaagtcataaaagctggagcaacaacactcaatatcccagacactgttggatacactcttccttatgaatttgggaaactaattgctgatataaaagcaaacactccaggaattgaaaatgccattatttctactcattgccagaatgaccttggtctagcaaccgcaaatacattagcggtactaccttttccttatctctttgatccattatcattggtttaatcatgtcactaatgtgacttaacctttagggcgctcatgcaggagcacggcaattagaggtgactatcaatggtattggtgaaagggctggaaatgcttctttggaagaggtgaactcatatactatgtttatgttgtttgttggtattttgcacatgttcatctaatggtttgcagaagaatgaatgcaagtaatattgatttcctatatatgcaacttttttttaaaaaaaaatatttttcaggttgtgatggcaattaaatgtcgtcgagaactcttaggaggtctgtatactggaatcaatacccaacatatcactatgtcaagcaaaatggtacaattatgtttgttttctttcttcttttgtttttttttatcttttgtctttttcaggtgactggaaatttcatgcacttttgcaaatactctgcttattctaggtacaagagcacagtggacttcatgtacaaccacataaagctattgtcggtgccaatgcctttgcacatgaaagtggaattcatcaggtaactaaatttgcattcttgccgtaatattgccatcaaatttcttgactgggttctctttagtgttgttttggtggtacctcaatttcacatctatctatatttcttgacttttagtgttgcctgggttcttgtttctgtttgccatttatctatattttataactctaaaagtgtttcttgccatcaatttacattttaggactaaggaattgattatcattactttttatttcctatctaaattttggaagtttcagaaatctttctagttgtcagtttgcatatgtgcactaggaaaaagttttgctcacatttttatagtatcacatactgagggaagtcaaattatttttatggatgcctatttttttctcagctccgatgaaatcattttctcatatatgatagatcaatcacggttttatatgaaccttgccttgcatattctcatattaattgtgttggttctaagtgaagtgatcttgatattcacttttgttattctgttttcaggatgggatgcttaagtacaaaggaacttatgaaataatttctcctgatgatattggtctaacacgtgcaaatgagtttggtattgttcttgggaagctcaggtaccatccatacatatgttcccccataatttgatttcttgcaagttgcaacattctccctgagatgttactcgaggagatagtttatctactttatgcactttcagctaatttggtgcaaagtacactttccaactatcaaacacttaaaatgttgaatgaccatatcatatggatactccatgtaaggtctaaattccgagatatgtatgcagatcatgtcacagtacaatttttacttgagaaattgtgtgatgtcatcctttgcttaaagttagtgaatttgctgttgttttttttttaattttttaggttaaacattgctcacttgacattgaggaaagctctacctggcctggtcattttatttagaattatctagttatcatatgttgttctgtacttctctagaataaatgaggttgccatattttttttttcatctttactcttgtatattaggtgaggttgatgcagcaatcctgctcaaatacttacgataggcttgcaattatgacttaaatctgatttgagattatcaactccaagttcataattatgctttcatgtcttcctttttttttcagtggaaggcatgctgtgagatctaaactagtggaggtattggaattgtctttatttttctagttagaattaaatgccttcttttcagttatcgttgctgaacaatactttgtcatccaatatgtagcttggatatgaaatcactgacaaggaatttgaggatttctttaaacgctacaaagaggttgcagagaagaaaaaggtgccagttttcctgagtgctctgttgctcgagtgacatgttcaaccttttttttttgtctgtagagcagaaagcattttgataacttctagcttatgtgctttaaatcattgtagcgtgtaactgatgaagacattgaggcgctgttgtctgatgagatatttcagcccaaggttttttggtcccttgctgatgtacaggtataattttgccacaatttactactttttggctaatggagaagttgatattttaaaattgatatgaagcctttttgcaggcaacttgtggaacacttggtctgtctacagcaactgtcaaactgataggtccggatggagatgagaagattgcatgtgcagttggaacaggtccagttgatgcagcttacaaggctgttgatgatataatacaggtgacagttgcaatattttttattgttcttgcactagtataccagtttatgggatggaatatggatgtgtttattcaatatgtaagaatgaaacatcctgcatctggtaacataacttgcagtatgttgcctctatgataaatatacaagaatcacaagaataggagattcagtacttaacaaggattagcatgcgatgtgttatgacttatgagcatgctttcaacaaaatgagtgcactattttgatgttaacagagaaattacctacatctactggcatgatttgtaaactatctgcattcatttcagtaaaactggagaaattatgaaacatctaagaatcatttgcaattcacagatcccaactgttcttcgagaatatagcatgacatcggtcacagaaggcattgatgcaattgcaactactagagtggttgtcactggagatgtcagcgactctaaacatgctttgactggtcactccttcaaccgggcattcaggtaagtcctttatactacttttttttttcactgggcaccttccttctgtgttgtttccaacatctattattgttattatcaattaaatttttctcatcaactaataatttctttgcctattgacctcagtgggagtggtgccgcactggatattgttgtttccagtgtgcgagcttacctgagtgccctgaacaagatgtccagttttgttggggctatcaaggctagtagtgaagtatctgaaagccaaagagttcaaaccacagaatgagtcttgacgctccttggttttcatatcggatggttctatgtttcacattcccagcaaggagtatgtgcttgttgaaacatggtttttccgtttagtgcatctggaggatgttctgggtttctttggtggagcctgacttaaggttgaacatccaggaagttttggggtatgtagtgtataattcatatttgaaaactgtatttccaataagacaataataaataattgtttgacatatgagtattgcaaaactattactgtaagaaattaatcgtgagaccaacctacggttgtacagtatcgagaacttctgaattgagggtcagcatttcgagtt
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| CDS seq | atggcctcctccctcctctcctccccaaaaccctcctccttctcctccgcaaaccccacctccactccacgcccacgcgcccaaactctctcccccttccgcgccgccgccccacgcttctcccatggcctcgccaccgccgccgccgccgcaaaccctagcgcctcccgccgctgctaccaccgcgccttcgcccgccccgtccgggcgtccatggcgcagccgcggcgcccggagtacgtccccaaccgcatcgacgaccccaactacgtccgcatcttcgacaccaccctccgcgacggggagcagtcccccggggccaccatgaccagcgccgagaagctcgtcgtcgcgcgccagctcgcccgcctcggcgtcgacatcatcgaggccgggttcccggcctcctcccccgacgacctcgacgccgtgcgctccatcgccatcgaggtcgggaacacgcccgtcggggaggacggccacgtgccggtcatctgtggcctctcgagatgcaataagcgagacattgatgctgcctgggaggccgtgcggcacgcgcggcggccgcgcatccacaccttcattgccaccagcgagatccatatgcagcacaagctaaggaagacgcccgagcaggtggtggccattgccaaggaaatggtggcctacgcccgcagcctaggctgccctgatgtcgagttcagccctgaagacgctggcaggtcaaacagagagtttctatatcatatactagaggaagtcataaaagctggagcaacaacactcaatatcccagacactgttggatacactcttccttatgaatttgggaaactaattgctgatataaaagcaaacactccaggaattgaaaatgccattatttctactcattgccagaatgaccttggtctagcaaccgcaaatacattagcgggcgctcatgcaggagcacggcaattagaggtgactatcaatggtattggtgaaagggctggaaatgcttctttggaagaggttgtgatggcaattaaatgtcgtcgagaactcttaggaggtctgtatactggaatcaatacccaacatatcactatgtcaagcaaaatggtacaagagcacagtggacttcatgtacaaccacataaagctattgtcggtgccaatgcctttgcacatgaaagtggaattcatcaggatgggatgcttaagtacaaaggaacttatgaaataatttctcctgatgatattggtctaacacgtgcaaatgagtttggtattgttcttgggaagctcagtggaaggcatgctgtgagatctaaactagtggagcttggatatgaaatcactgacaaggaatttgaggatttctttaaacgctacaaagaggttgcagagaagaaaaagcgtgtaactgatgaagacattgaggcgctgttgtctgatgagatatttcagcccaaggttttttggtcccttgctgatgtacaggcaacttgtggaacacttggtctgtctacagcaactgtcaaactgataggtccggatggagatgagaagattgcatgtgcagttggaacaggtccagttgatgcagcttacaaggctgttgatgatataatacagatcccaactgttcttcgagaatatagcatgacatcggtcacagaaggcattgatgcaattgcaactactagagtggttgtcactggagatgtcagcgactctaaacatgctttgactggtcactccttcaaccgggcattcagtgggagtggtgccgcactggatattgttgtttccagtgtgcgagcttacctgagtgccctgaacaagatgtccagttttgttggggctatcaaggctagtagtgaagtatctgaaagccaaagagttcaaaccacagaatga
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| Protein seq | MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCYHRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINTQHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGDEKIACAVGTGPVDAAYKAVDDIIQIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFNRAFSGSGAALDIVVSSVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE |
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| Function | 2-isopropylmalate synthase A [UniProtKB/Swiss-Prot:O04973] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002840 | OsLiXu_12g0002840.01 | Chr12 | 2011984 | 2017957 | + | NAM | ||
| CDS seq | atggcctcctccctcctctcctccccaaaaccctcctccttctcctccgcaaaccccacctccactccacgcccacgcgcccaaactctctcccccttccgcgccgccgccccacgcttctcccatggcctcgccaccgccgccgccgccgcaaaccctagcgcctcccgccgctgctaccaccgcgccttcgcccgccccgtccgggcgtccatggcgcagccgcggcgcccggagtacgtccccaaccgcatcgacgaccccaactacgtccgcatcttcgacaccaccctccgcgacggggagcagtcccccggggccaccatgaccagcgccgagaagctcgtcgtcgcgcgccagctcgcccgcctcggcgtcgacatcatcgaggccgggttcccggcctcctcccccgacgacctcgacgccgtgcgctccatcgccatcgaggtcgggaacacgcccgtcggggaggacggccacgtgccggtcatctgtggcctctcgagatgcaataagcgagacattgatgctgcctgggaggccgtgcggcacgcgcggcggccgcgcatccacaccttcattgccaccagcgagatccatatgcagcacaagctaaggaagacgcccgagcaggtggtggccattgccaaggaaatggtggcctacgcccgcagcctaggctgccctgatgtcgagttcagccctgaagacgctggcaggtcaaacagagagtttctatatcatatactagaggaagtcataaaagctggagcaacaacactcaatatcccagacactgttggatacactcttccttatgaatttgggaaactaattgctgatataaaagcaaacactccaggaattgaaaatgccattatttctactcattgccagaatgaccttggtctagcaaccgcaaatacattagcgggcgctcatgcaggagcacggcaattagaggtgactatcaatggtattggtgaaagggctggaaatgcttctttggaagaggttgtgatggcaattaaatgtcgtcgagaactcttaggaggtctgtatactggaatcaatacccaacatatcactatgtcaagcaaaatggtacaagagcacagtggacttcatgtacaaccacataaagctattgtcggtgccaatgcctttgcacatgaaagtggaattcatcaggatgggatgcttaagtacaaaggaacttatgaaataatttctcctgatgatattggtctaacacgtgcaaatgagtttggtattgttcttgggaagctcagtggaaggcatgctgtgagatctaaactagtggagcttggatatgaaatcactgacaaggaatttgaggatttctttaaacgctacaaagaggttgcagagaagaaaaagcgtgtaactgatgaagacattgaggcgctgttgtctgatgagatatttcagcccaaggttttttggtcccttgctgatgtacaggcaacttgtggaacacttggtctgtctacagcaactgtcaaactgataggtccggatggagatgagaagattgcatgtgcagttggaacaggtccagttgatgcagcttacaaggctgttgatgatataatacagatcccaactgttcttcgagaatatagcatgacatcggtcacagaaggcattgatgcaattgcaactactagagtggttgtcactggagatgtcagcgactctaaacatgctttgactggtcactccttcaaccgggcattcagtgggagtggtgccgcactggatattgttgtttccagtgtgcgagcttacctgagtgccctgaacaagatgtccagttttgttggggctatcaaggctagtagtgaagtatctgaaagccaaagagttcaaaccacagaatga
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| Protein seq | MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCYHRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINTQHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGDEKIACAVGTGPVDAAYKAVDDIIQIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFNRAFSGSGAALDIVVSSVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.036273 | 0.0 | 0.439997 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0138900 | RBH | 3.432825 | 4.055050 | 8.353522 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04440 | RBH | 2.111126 | 2.431191 | 1.942740 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0138900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002630 | RBH | 1.524770 | 12.487532 | 6.563944 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002850 | RBH | 0.074747 | 3.153191 | 3.164933 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002870 | RBH | 1.578711 | 3.979707 | 11.905984 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002660 | RBH | 0.137481 | 0.173765 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002900 | RBH | 5.778450 | 11.979626 | 10.960748 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0037400 | SBH | 4.1452955 | 12.186348 | 10.560202 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002880 | RBH | 0.501375 | 0.973515 | 1.195736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0035100 | RBH | 6.3826755 | 55.468134 | 9.860917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002660 | RBH | 0.322316 | 0.187021 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002880 | RBH | 0.368758 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002900 | RBH | 5.277797 | 16.280827 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002790 | RBH | 1.887353 | 0.0 | 1.648910 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002820 | RBH | 0.458013 | 7.867790 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002720 | RBH | 1.177728 | 4.130568 | 1.561521 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002960 | RBH | 2.009030 | 27.397707 | 6.021419 |
