Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0002230 | OGI:12004390 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:1613291-1615780 | ||||||||
| Gene Symbol | RLCK360, OsRLCK360, SDK3 | ||||||||||
| DNA seq | ttaaccttcaaccgagatgagtgattgcacaactgagttcatgtttggccgcttgctcctatcttcctccaagcatgaaatggcaatctcaagcatcagcttcacttgtacatggttgaaatcaccattcaatcgatagtccacaagatcctcaatagatctcttttcattggactccatcttctgacgtgtcgccctaacaaccatcctaatatccatctcacataccttgatcccatggatcacccattccgaaatcctaatccccttcactagctcaaggagtatcactccgtaactatacacatcaaccttctctgtaaatggtaagttagtaacccactctggagccatgtaccctcttgtccctctaatccttgtcaaaattgcatctgaaccatctctgtttaacaacttagacaacccaaaatccgtaatcttgggctccaaatccttatccaacaaaatgttctcaggcttcatgtcacaatgaacaatccattctgagcactcactgtgaaggtaagccaaccctttagccacacccaaagcaatcctgaacctttgattccaatcaagcacatcatcatcaaatccatgatcaaacaatctttgtgcaagtgatccattctctatgtattcagagacaagaatcctgtgcttggcttgagagcagcaaccccacattctgacaaggttcatgtgatagatccttccaatcacactcagctctgcttggaactcctcctcactctgccggctcacgttcttgagcaccttcacggccaccaccctctcgtcgtcaagcacgcccttgtacaccacgccggagccgccgcggccgatcacgccggtgaagttcgccgtggctttcttgatgtcagcgtaggtgtacctctggaaatggctcgtgatcagcttgtagccttcttgatcaatggcgtacacccgtgaatgccggaacaatcctttgcttgagaagagccagcagccgaacccgatgacgatggcctcgacgacgagcaacgctgacaagaatccgtacaggtatggccacaccggcttaccggcgtcgtgagatgacagtgaagaggagacgttgaggagaacctttctgttgctgtcgccggtggcggcggcggcgcagccggcgatgtcttcttggatggcgaggccaccgccgccgccgtcgccgccgcgctgccattggtggacatgaaactccggcacgtcgaagtcggcggggaccttgatgtacaccgttcccggcaagccggggaacgtcttgccgttgaagaggacgctcttgaggtagcactccatgtgctccttgtactggaacaccacgcacgcgcagttgtcgaggcacttgttggcgcagtcgccgagcggcatgacctcgccgtcgttgaggtcgtagccccagaagtcgctgtgcggcagcgccaccagcttcgccggccggccgcactcgagccggaacgtcggcctgcaccccctgctccagtcgctcgcgtcgacgcgctcgtgccccggcgcgcagacgcacaacggcgccggcgagtagaggcacacggcgttggcgccgcacacgccgtggatgttgcacgggttgccgaacgccatccacgacaccgaccacgttcccgtcgcgtcgtccaggctgtacgccctgaggttgccgtccgtgtccagcgtcagccgcctcctgacgccggcggcgccgaggtcggcggcctcgaaggtggtgccgtcgctggagaagaactgcccgagcgcgtccatggcggcctcgcgggagaagttgtagatcttgcggttgttctgccagtagctgaagtaagggttgggccagtagatgctggagaagttgccgttgtcgtagaagagggacagcatggcgtagtcgctgaacccgaggctgtagtagccggcggagagcagccggtcgcgcgacaccagccgcgtcgccgccgtcagccgctgcgccgggagcagcgtgtcggtggggaagtcgaagctctgccacagcgtcttgccgccggcgtcctcgaccaccaggttgccggtgtcgtggagccgaacgcgggcgccgccgctgccaccggcggcgggggtggaggagttccagaccacctcgccgccgtagtcggtgaggacgagcgcgccgcggcgcgcgtcgagcgtgacgcgcgcgcccttgctgtgcacggggcgcgcccgagccgcggtccagacgacggcgcggtcggcggcgcgcgcgaaccagacggagaaggtgaagacggtgggagacgcgtcgtagaagccggcggcgaacgtgccgtccggcgagcgcaggacgtcggtggcgtggtcctcgacggcgatcgaggcgccccgggcgagccactcacgcgccgcgtcgacgcgccgtggacatggacgcggcgacgagcttagcgtgatgatcacaagcaacgcgaaggttgcaaggcgagagttcatcat
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| CDS seq | atgatgaactctcgccttgcaaccttcgcgttgcttgtgatcatcacgctaagctcgtcgccgcgtccatgtccacggcgcgtcgacgcggcgcgtgagtggctcgcccggggcgcctcgatcgccgtcgaggaccacgccaccgacgtcctgcgctcgccggacggcacgttcgccgccggcttctacgacgcgtctcccaccgtcttcaccttctccgtctggttcgcgcgcgccgccgaccgcgccgtcgtctggaccgcggctcgggcgcgccccgtgcacagcaagggcgcgcgcgtcacgctcgacgcgcgccgcggcgcgctcgtcctcaccgactacggcggcgaggtggtctggaactcctccacccccgccgccggtggcagcggcggcgcccgcgttcggctccacgacaccggcaacctggtggtcgaggacgccggcggcaagacgctgtggcagagcttcgacttccccaccgacacgctgctcccggcgcagcggctgacggcggcgacgcggctggtgtcgcgcgaccggctgctctccgccggctactacagcctcgggttcagcgactacgccatgctgtccctcttctacgacaacggcaacttctccagcatctactggcccaacccttacttcagctactggcagaacaaccgcaagatctacaacttctcccgcgaggccgccatggacgcgctcgggcagttcttctccagcgacggcaccaccttcgaggccgccgacctcggcgccgccggcgtcaggaggcggctgacgctggacacggacggcaacctcagggcgtacagcctggacgacgcgacgggaacgtggtcggtgtcgtggatggcgttcggcaacccgtgcaacatccacggcgtgtgcggcgccaacgccgtgtgcctctactcgccggcgccgttgtgcgtctgcgcgccggggcacgagcgcgtcgacgcgagcgactggagcagggggtgcaggccgacgttccggctcgagtgcggccggccggcgaagctggtggcgctgccgcacagcgacttctggggctacgacctcaacgacggcgaggtcatgccgctcggcgactgcgccaacaagtgcctcgacaactgcgcgtgcgtggtgttccagtacaaggagcacatggagtgctacctcaagagcgtcctcttcaacggcaagacgttccccggcttgccgggaacggtgtacatcaaggtccccgccgacttcgacgtgccggagtttcatgtccaccaatggcagcgcggcggcgacggcggcggcggtggcctcgccatccaagaagacatcgccggctgcgccgccgccgccaccggcgacagcaacagaaaggttctcctcaacgtctcctcttcactgtcatctcacgacgccggtaagccggtgtggccatacctgtacggattcttgtcagcgttgctcgtcgtcgaggccatcgtcatcgggttcggctgctggctcttctcaagcaaaggattgttccggcattcacgggtgtacgccattgatcaagaaggctacaagctgatcacgagccatttccagaggtacacctacgctgacatcaagaaagccacggcgaacttcaccggcgtgatcggccgcggcggctccggcgtggtgtacaagggcgtgcttgacgacgagagggtggtggccgtgaaggtgctcaagaacgtgagccggcagagtgaggaggagttccaagcagagctgagtgtgattggaaggatctatcacatgaaccttgtcagaatgtggggttgctgctctcaagccaagcacaggattcttgtctctgaatacatagagaatggatcacttgcacaaagattgtttgatcatggatttgatgatgatgtgcttgattggaatcaaaggttcaggattgctttgggtgtggctaaagggttggcttaccttcacagtgagtgctcagaatggattgttcattgtgacatgaagcctgagaacattttgttggataaggatttggagcccaagattacggattttgggttgtctaagttgttaaacagagatggttcagatgcaattttgacaaggattagagggacaagagggtacatggctccagagtgggttactaacttaccatttacagagaaggttgatgtgtatagttacggagtgatactccttgagctagtgaaggggattaggatttcggaatgggtgatccatgggatcaaggtatgtgagatggatattaggatggttgttagggcgacacgtcagaagatggagtccaatgaaaagagatctattgaggatcttgtggactatcgattgaatggtgatttcaaccatgtacaagtgaagctgatgcttgagattgccatttcatgcttggaggaagataggagcaagcggccaaacatgaactcagttgtgcaatcactcatctcggttgaaggttaa
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| Protein seq | MMNSRLATFALLVIITLSSSPRPCPRRVDAAREWLARGASIAVEDHATDVLRSPDGTFAAGFYDASPTVFTFSVWFARAADRAVVWTAARARPVHSKGARVTLDARRGALVLTDYGGEVVWNSSTPAAGGSGGARVRLHDTGNLVVEDAGGKTLWQSFDFPTDTLLPAQRLTAATRLVSRDRLLSAGYYSLGFSDYAMLSLFYDNGNFSSIYWPNPYFSYWQNNRKIYNFSREAAMDALGQFFSSDGTTFEAADLGAAGVRRRLTLDTDGNLRAYSLDDATGTWSVSWMAFGNPCNIHGVCGANAVCLYSPAPLCVCAPGHERVDASDWSRGCRPTFRLECGRPAKLVALPHSDFWGYDLNDGEVMPLGDCANKCLDNCACVVFQYKEHMECYLKSVLFNGKTFPGLPGTVYIKVPADFDVPEFHVHQWQRGGDGGGGGLAIQEDIAGCAAAATGDSNRKVLLNVSSSLSSHDAGKPVWPYLYGFLSALLVVEAIVIGFGCWLFSSKGLFRHSRVYAIDQEGYKLITSHFQRYTYADIKKATANFTGVIGRGGSGVVYKGVLDDERVVAVKVLKNVSRQSEEEFQAELSVIGRIYHMNLVRMWGCCSQAKHRILVSEYIENGSLAQRLFDHGFDDDVLDWNQRFRIALGVAKGLAYLHSECSEWIVHCDMKPENILLDKDLEPKITDFGLSKLLNRDGSDAILTRIRGTRGYMAPEWVTNLPFTEKVDVYSYGVILLELVKGIRISEWVIHGIKVCEMDIRMVVRATRQKMESNEKRSIEDLVDYRLNGDFNHVQVKLMLEIAISCLEEDRSKRPNMNSVVQSLISVEG |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002230 | OsLiXu_12g0002230.01 | Chr12 | 1613291 | 1615780 | - | NAM | ||
| CDS seq | atgatgaactctcgccttgcaaccttcgcgttgcttgtgatcatcacgctaagctcgtcgccgcgtccatgtccacggcgcgtcgacgcggcgcgtgagtggctcgcccggggcgcctcgatcgccgtcgaggaccacgccaccgacgtcctgcgctcgccggacggcacgttcgccgccggcttctacgacgcgtctcccaccgtcttcaccttctccgtctggttcgcgcgcgccgccgaccgcgccgtcgtctggaccgcggctcgggcgcgccccgtgcacagcaagggcgcgcgcgtcacgctcgacgcgcgccgcggcgcgctcgtcctcaccgactacggcggcgaggtggtctggaactcctccacccccgccgccggtggcagcggcggcgcccgcgttcggctccacgacaccggcaacctggtggtcgaggacgccggcggcaagacgctgtggcagagcttcgacttccccaccgacacgctgctcccggcgcagcggctgacggcggcgacgcggctggtgtcgcgcgaccggctgctctccgccggctactacagcctcgggttcagcgactacgccatgctgtccctcttctacgacaacggcaacttctccagcatctactggcccaacccttacttcagctactggcagaacaaccgcaagatctacaacttctcccgcgaggccgccatggacgcgctcgggcagttcttctccagcgacggcaccaccttcgaggccgccgacctcggcgccgccggcgtcaggaggcggctgacgctggacacggacggcaacctcagggcgtacagcctggacgacgcgacgggaacgtggtcggtgtcgtggatggcgttcggcaacccgtgcaacatccacggcgtgtgcggcgccaacgccgtgtgcctctactcgccggcgccgttgtgcgtctgcgcgccggggcacgagcgcgtcgacgcgagcgactggagcagggggtgcaggccgacgttccggctcgagtgcggccggccggcgaagctggtggcgctgccgcacagcgacttctggggctacgacctcaacgacggcgaggtcatgccgctcggcgactgcgccaacaagtgcctcgacaactgcgcgtgcgtggtgttccagtacaaggagcacatggagtgctacctcaagagcgtcctcttcaacggcaagacgttccccggcttgccgggaacggtgtacatcaaggtccccgccgacttcgacgtgccggagtttcatgtccaccaatggcagcgcggcggcgacggcggcggcggtggcctcgccatccaagaagacatcgccggctgcgccgccgccgccaccggcgacagcaacagaaaggttctcctcaacgtctcctcttcactgtcatctcacgacgccggtaagccggtgtggccatacctgtacggattcttgtcagcgttgctcgtcgtcgaggccatcgtcatcgggttcggctgctggctcttctcaagcaaaggattgttccggcattcacgggtgtacgccattgatcaagaaggctacaagctgatcacgagccatttccagaggtacacctacgctgacatcaagaaagccacggcgaacttcaccggcgtgatcggccgcggcggctccggcgtggtgtacaagggcgtgcttgacgacgagagggtggtggccgtgaaggtgctcaagaacgtgagccggcagagtgaggaggagttccaagcagagctgagtgtgattggaaggatctatcacatgaaccttgtcagaatgtggggttgctgctctcaagccaagcacaggattcttgtctctgaatacatagagaatggatcacttgcacaaagattgtttgatcatggatttgatgatgatgtgcttgattggaatcaaaggttcaggattgctttgggtgtggctaaagggttggcttaccttcacagtgagtgctcagaatggattgttcattgtgacatgaagcctgagaacattttgttggataaggatttggagcccaagattacggattttgggttgtctaagttgttaaacagagatggttcagatgcaattttgacaaggattagagggacaagagggtacatggctccagagtgggttactaacttaccatttacagagaaggttgatgtgtatagttacggagtgatactccttgagctagtgaaggggattaggatttcggaatgggtgatccatgggatcaaggtatgtgagatggatattaggatggttgttagggcgacacgtcagaagatggagtccaatgaaaagagatctattgaggatcttgtggactatcgattgaatggtgatttcaaccatgtacaagtgaagctgatgcttgagattgccatttcatgcttggaggaagataggagcaagcggccaaacatgaactcagttgtgcaatcactcatctcggttgaaggttaa
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| Protein seq | MMNSRLATFALLVIITLSSSPRPCPRRVDAAREWLARGASIAVEDHATDVLRSPDGTFAAGFYDASPTVFTFSVWFARAADRAVVWTAARARPVHSKGARVTLDARRGALVLTDYGGEVVWNSSTPAAGGSGGARVRLHDTGNLVVEDAGGKTLWQSFDFPTDTLLPAQRLTAATRLVSRDRLLSAGYYSLGFSDYAMLSLFYDNGNFSSIYWPNPYFSYWQNNRKIYNFSREAAMDALGQFFSSDGTTFEAADLGAAGVRRRLTLDTDGNLRAYSLDDATGTWSVSWMAFGNPCNIHGVCGANAVCLYSPAPLCVCAPGHERVDASDWSRGCRPTFRLECGRPAKLVALPHSDFWGYDLNDGEVMPLGDCANKCLDNCACVVFQYKEHMECYLKSVLFNGKTFPGLPGTVYIKVPADFDVPEFHVHQWQRGGDGGGGGLAIQEDIAGCAAAATGDSNRKVLLNVSSSLSSHDAGKPVWPYLYGFLSALLVVEAIVIGFGCWLFSSKGLFRHSRVYAIDQEGYKLITSHFQRYTYADIKKATANFTGVIGRGGSGVVYKGVLDDERVVAVKVLKNVSRQSEEEFQAELSVIGRIYHMNLVRMWGCCSQAKHRILVSEYIENGSLAQRLFDHGFDDDVLDWNQRFRIALGVAKGLAYLHSECSEWIVHCDMKPENILLDKDLEPKITDFGLSKLLNRDGSDAILTRIRGTRGYMAPEWVTNLPFTEKVDVYSYGVILLELVKGIRISEWVIHGIKVCEMDIRMVVRATRQKMESNEKRSIEDLVDYRLNGDFNHVQVKLMLEIAISCLEEDRSKRPNMNSVVQSLISVEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002020 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002240 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002260 | RBH | 0.000000 | 1.340865 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026500 | RBH | 0.018304 | 0.241346 | 0.0178175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002270 | RBH | 0.0 | 0.064417 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0027500 | RBH | 0 | 0.319316 | 0.0165915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002260 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002280 | RBH | 0.0 | 2.535839 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002190 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002260 | SBH | 0.0 | 0.360111 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002190 | SBH | 0.0 | 0.0 | 0.117536 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002170 | SBH | 0.0 | 0.0 | 0.000000 |
