Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0002160 | OGI:11005240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:1566181-1569393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcatctgtagtgtttggtcaaaggaatgtgcgtgtctttcccctgaggaggcacatattggatgaggtgtttcagcatggtccttgtaattgtagcacacagaggaggtggaaaaagccaattgattcagcaagaactcgtctggagggcagaataagggatcataaactggacaagctgatgattcaactgaagaacctgaggctagctttggatttgcatgagttcatatctcagcagaggaatggctacgcatctctccaactcctctccaggtggagacatgaagtcgggctaaacattgagattggggctttccttaagaaatatccccacatcttcgacatttatgtgcacccaataaagaataaccaatgctgtaaggtcactccaaagatggctgatttgattgcagaagaagatgctgccatctgggaaaatgagcctgctattgttaaacggctgaagaaactcctcatgctgtcgacagatggaactctgaatatgcatgcactgtggctcataagaagagaacttgggttgcccaatgactaaaggtgctctatactaccaaaccatcggtcagagttttttttgagaatacgcgaggggcgcatctttgtattaagaaggaataaaagtatttacagagcgggccgaaaaatcaaaaacacgaaggggacaagatacaggaggggggaggaggaagaaaataaaagcctaatctcccaacgaatgtggcgaccttccacccgacataggggtcgccatggccggtatcgcggctctagccaaccgccaaaggtccgcttcgcccgtcatggccctagcaatttccgaccatgtcctgctcttttcgttgaagacccgattgtttctttctttccaaatcgtccacgccaccaaagttgcaatggtgtcgaaccctcgacgatgttccttggccattcttttgcgactgtcacatagccaggagtggaaagagtgctcattgagaggcagacattcagaatgaccgatagctgaaagagcaatccaccatagctggcgagactccgagcaagcaaccaataagtgatcaatcgtctcatcgcattgatcacaaagagggcagcgagccgggtgtgacagtcctcgactccgaagacgatccgctgtccaacaacgattcagtgcgaccagccacaaaaagtaccgacagtgcgggggcgctagagacttccaaattggcttgtgctcgaggctggttcttcccgcgaagagaagacgatacgccgagcgagcggagtaggacctcgagctttcccaacgccaagagatcgtgtccggttcctcacctagctgaatcgagcgcagaatgtcccaaagcttgagatattccaggatttcctaaatccccagtgccgcacagatgtctcgaatccacctcctgtcttgcaaagcctcagctaccgttcgtctgttccggaccatcggtcagagttttctctaggttcccccgatactctgacatttgtcactagggatgaaaatttagctgtagccgatgttgaagaatggagagtgaaggaatatgcagaaaaatggttagctgaatctgagacaaaatattcttttcctataaactttccaaccggctttaagattgagaaaggttttagggaaaagcttggtaactggcagaggcttccctacaccaaggcttatgagaataatgaattgcatccaatccataatgttgagcagctcgagaaacatattgttggcattcttcacgaacttttaagcttgacagtggaaaagatgataccacttgagaggttctcccatttcagaagaccttttgatatggaggtaaacctgagggaacttgttcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtcctccttagagagaattacagtaagggatgcttggttgatcctaaccctgtctacaatgtaagaaggaaaatgctagatcttattttgtcaggatgccatgggattgatgaaacggatggtccaattcagttagttgaggagcacaatcaagaaagcagtaatgtgtcatagaatcacatgtggcagacagattccggatgccttgtcggaagctcaaagtgacatttatcaaagaattagctattttaatctctgacattgtttatgggcttatgggagtacaatgttgataatggtatgaacttgagacgtcggtggtggagcatcatcggttgaggaatgtactgatgtgcaagctaagaaagtcagctgtcctgagggcctactctgcacccagggaagaatggatgcatcacggtgcttagcagctaacaaaggaagatgcgcttgagcagaatcagttgtcaaccttggttcctgttcgacagatctactattatttttacggtactccactgatttattttcactaaagagataggtccaatgaagatttaagggcagtcattgatgctttgaactggtctatcataaatgttgaaacagaactcacgagtgttcaactagtgtattgctctcgatcccccttcaaagggtaacatttacatatttatactagattacatgcaaaggaaattacaaccctacccctatctctgtagctaccctgaggtggctgacaagtgggcccgccaacggtctgggagtccattcgccggacagggagacaacggcgcccattaaggggggtggtatggcgccatcatgatgctagcctttacccgggtaatagcgggcttcgggtaaagactagcatcggccttcacatcgccagtcgtgccatgacgtcggtggtggttggaggatgagtagtgcgcttttatggcgccccatactcgttcctggtgtcttccctaggctctggcctcggagccatgtcaagagctctggagcccttgagctggctcatgggcctccagggcctccggtggcccatggctgggctccgggatcctccgggccttccggttagcttcaaacttcctggagccaactgccctcttcgggctcggccggcttcctaggccatcggaatgggtcctccctgcggagacgggctccgcagggtgctggcggcgggcctccgggcggaggccctatctcctccggagccaccagggagtgaatggcgcaagatcgcaatccttcccccaacaataa
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| CDS seq | atggcatctgtagtgtttggtcaaaggaatgtgcgtgtctttcccctgaggaggcacatattggatgaggtgtttcagcatggtccttgtaattgtagcacacagaggaggtggaaaaagccaattgattcagcaagaactcgtctggagggcagaataagggatcataaactggacaagctgatgattcaactgaagaacctgaggctagctttggatttgcatgagttcatatctcagcagaggaatggctacgcatctctccaactcctctccaggtggagacatgaagtcgggctaaacattgagattggggctttccttaagaaatatccccacatcttcgacatttatgtgcacccaataaagaataaccaatgctgtaaggtcactccaaagatggctgatttgattgcagaagaagatgctgccatctgggaaaatgagcctgctattgttaaacggctgaagaaactcctcatgctgtcgacagatggaactctgaatatgcatgcactagtgaaggaatatgcagaaaaatggttagctgaatctgagacaaaatattcttttcctataaactttccaaccggctttaagattgagaaaggttttagggaaaagcttggtaactggcagaggcttccctacaccaaggcttatgagaataatgaattgcatccaatccataatgttgagcagctcgagaaacatattgttggcattcttcacgaacttttaagcttgacagtggaaaagatgataccacttgagaggttctcccatttcagaagaccttttgatatggaggtaaacctgagggaacttgttcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtcctccttagagagaattacagtaagggatgcttggttgatcctaaccctgtctacaatgtaagaaggaaaatgctagatcttattttgtcaggatgccatgggattgatgaaacggatggtccaattcagttagttgaggagcacaatcaagaaagcagtaatccaactgccctcttcgggctcggccggcttcctaggccatcggaatgggtcctccctgcggagacgggctccgcagggtgctggcggcgggcctccgggcggaggccctatctcctccggagccaccagggagtgaatggcgcaagatcgcaatccttcccccaacaataa
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| Protein seq | MASVVFGQRNVRVFPLRRHILDEVFQHGPCNCSTQRRWKKPIDSARTRLEGRIRDHKLDKLMIQLKNLRLALDLHEFISQQRNGYASLQLLSRWRHEVGLNIEIGAFLKKYPHIFDIYVHPIKNNQCCKVTPKMADLIAEEDAAIWENEPAIVKRLKKLLMLSTDGTLNMHALVKEYAEKWLAESETKYSFPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNELHPIHNVEQLEKHIVGILHELLSLTVEKMIPLERFSHFRRPFDMEVNLRELVLKHPGIFYISTKGSTQTVLLRENYSKGCLVDPNPVYNVRRKMLDLILSGCHGIDETDGPIQLVEEHNQESSNPTALFGLGRLPRPSEWVLPAETGSAGCWRRASGRRPYLLRSHQGVNGARSQSFPQQ |
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| Function | Protein ROOT PRIMORDIUM DEFECTIVE 1 [UniProtKB/Swiss-Prot:Q689D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002160 | OsLiXu_12g0002160.01 | Chr12 | 1566181 | 1569393 | + | NAM | ||
| CDS seq | atggcatctgtagtgtttggtcaaaggaatgtgcgtgtctttcccctgaggaggcacatattggatgaggtgtttcagcatggtccttgtaattgtagcacacagaggaggtggaaaaagccaattgattcagcaagaactcgtctggagggcagaataagggatcataaactggacaagctgatgattcaactgaagaacctgaggctagctttggatttgcatgagttcatatctcagcagaggaatggctacgcatctctccaactcctctccaggtggagacatgaagtcgggctaaacattgagattggggctttccttaagaaatatccccacatcttcgacatttatgtgcacccaataaagaataaccaatgctgtaaggtcactccaaagatggctgatttgattgcagaagaagatgctgccatctgggaaaatgagcctgctattgttaaacggctgaagaaactcctcatgctgtcgacagatggaactctgaatatgcatgcactagtgaaggaatatgcagaaaaatggttagctgaatctgagacaaaatattcttttcctataaactttccaaccggctttaagattgagaaaggttttagggaaaagcttggtaactggcagaggcttccctacaccaaggcttatgagaataatgaattgcatccaatccataatgttgagcagctcgagaaacatattgttggcattcttcacgaacttttaagcttgacagtggaaaagatgataccacttgagaggttctcccatttcagaagaccttttgatatggaggtaaacctgagggaacttgttcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtcctccttagagagaattacagtaagggatgcttggttgatcctaaccctgtctacaatgtaagaaggaaaatgctagatcttattttgtcaggatgccatgggattgatgaaacggatggtccaattcagttagttgaggagcacaatcaagaaagcagtaatccaactgccctcttcgggctcggccggcttcctaggccatcggaatgggtcctccctgcggagacgggctccgcagggtgctggcggcgggcctccgggcggaggccctatctcctccggagccaccagggagtgaatggcgcaagatcgcaatccttcccccaacaataa
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| Protein seq | MASVVFGQRNVRVFPLRRHILDEVFQHGPCNCSTQRRWKKPIDSARTRLEGRIRDHKLDKLMIQLKNLRLALDLHEFISQQRNGYASLQLLSRWRHEVGLNIEIGAFLKKYPHIFDIYVHPIKNNQCCKVTPKMADLIAEEDAAIWENEPAIVKRLKKLLMLSTDGTLNMHALVKEYAEKWLAESETKYSFPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNELHPIHNVEQLEKHIVGILHELLSLTVEKMIPLERFSHFRRPFDMEVNLRELVLKHPGIFYISTKGSTQTVLLRENYSKGCLVDPNPVYNVRRKMLDLILSGCHGIDETDGPIQLVEEHNQESSNPTALFGLGRLPRPSEWVLPAETGSAGCWRRASGRRPYLLRSHQGVNGARSQSFPQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130100 | RBH | 0.095538 | 0.0 | 0.467788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03630 | RBH | 0.000000 | 0.0 | 0.100616 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001980 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002190 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002210 | SBH | 0.0 | 0.0 | 0.758288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002200 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026100 | RBH | 0 | 0.1980285 | 0.016077 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002200 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0026900 | RBH | 0 | 0.32557 | 0.1527465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002100 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002280 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002130 | SBH | 0.0 | 0.0 | 0.052107 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002380 | RBH | 0.297215 | 0.000000 | 0.0 |
