Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0023510 | OGI:11081320 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:30856709-30860419 | ||||||||
| Gene Symbol | LR21, Lr21, OsLr21 | ||||||||||
| DNA seq | tcaacggattatttgctgatcgatatgcttaatccttcgccaatttggatgtccaggggtcagacaggtgtccgcaagagaagggaggcaaccagagattacaatgctcttgagcgattggggaagcttgggcagtgtcatcatgttgggacactcctggacgatcaattccctgagtgttttcaggcggcacaatttgacaggcaaatagttccagctgcagtctgtaactgacagtgtatggaggcaggtgaagaattcaccaatctttgggggatcactcgatcccttgcaactccagaacataagattctgcaatgccgggcgatcttgttcctgttccttgtcgcaaccgtctcctgtcaaccagcttgggtatatcacaccaccgtaatccctgatgcaaagtactgtaatccccgacggtggacggagcccctcaagaacctcctcctgaagttctggaggttgatgttgcttgatctctgttacaggtggaaagaacagcctcttgtatgattccaacgctttcttcgagcagcgttcgtcagtgccaccccaccgtagcgtcagctcagtgagatataccttgtcagatagcctggctcgaacagcttcctccttgctctgaacattctcgatgcagtcgatgaacagcttgccacgaaggttgttcaggtgctccagctgctgtatctcgtatcctttctccttcctcacatagaagtgatacagagctcggagagatgtcagcttcccaacatcaggaatgttcaggccataccatgtcagcatgtacctcaggttgatcaggttggcgatcttcagctgggatggacaatgcaagcgagtgttaggatggacagagagctcctgaagatggtaaagcttggaaaattcagccggcagaatcaggctgtggggaggaggtgacatgatgccaagataacgaagatgtttcagtccaccgatgcatggtggcaccctgctcaaatgtctcaaatccaagtgcaccaccctcaactttgttagcttcttcagcacacgctcaaaatcatcttggttcattccctctactgaatagcacatgataagagttctcaagtttttaagctccaaaatcttctctgggaacaatatttcactgtatgactcgatgcaaagatgtcgaacgtgtttaggaagatgttccatgatgcttttctcgatcttgacgcagtcgcttcccgcgatcgtcttcgctaattcatggaacatgtcatgaactgtgaagtactcaccggtgctaatgtcagagggactgaccaacatcttctacgtcctcattgtttccatcattgtccttcacaaatccttgcgctatccacatacgaacaagattgtcacgttcaagctcataccttctggggaagatgctacagtactggaagcatctcctgacatccacaacaagttgattatagctccaccaaagagctcccttggtcttattcagcacatcgaggttcgcggttgtttgccaaaatctgatatctgggtttctccagagctgacctgccactgtcactgctgcaataggtgatctgttcagcttcttagcgattttcctcccaatcggtatgtattctcgatcatcgaaaattgtactgtcaagtgcataatgcatgaacattgagaagtattgctcctcttccagatcagatattggaataagcctattagagcctagagctgcctctttactctgggctgtcaccaggattctgcttcctgacttcccaacattgagtggagaaagcagcttctcatgattctcatcattgacccacagatcatccagtaccaacaagaaccgtttgcctctcaaattctccaccaattttgcttccaaacctctgcagtcactaatttcagaatgccggctttgcgtgatctcctcgagcatatcacgaaatatatcttccagtctgtaagtcttagaaacataaattagcatgactgtgtcaaagtatctatctttatcctccttttcatactcacaaacatactgtgccagtgtagtctttccagaccctggaatgccatatatgcaaattacagaataacatttcctgctactggagcttggtaaagaatcatcctcacgaagcatacttcttatcatatcacgctcccggtctctaccgaataccttgcgtgtactactcgatgtaatgcttctcctgttcatgttgacaatatcattccaggcaccactgcttgtctgtgttaaatagggagatttctccacgtttgtgacagtgttttctagtttctctattcttttcctcaatttccatctagcaatagcaggcatgaaagaatatactgctgtaccatcctccagctggaagaataaagaacaaaaaaaatgattagaatggaatggtggaggaatgtgcatactttccaagctcctaaatggtgcattttttgcgaacactttctatatacgaatttattaggaaactcttttaaatccatttccactttatagtatcaattcaattcgtatgtacacttgaataattatctttaatcattgagctattcaaccaatttagccattcagcacaaaagaacaggaccatgtgagctacatactgaacttccttaaaatatatatatatactgaactagttctactctctgacgactgttgtcccctgattaataatagatgttgttttcttctaaattagtgcttctgtttagaacatggaaattttttcttgttacttcaaaaattgaactattagatgtagtaacattagtggtgtctcaaacactaagaccctttaacacattccagcaactattgatttccgaataaaattgaggagcgcgacataaattttaccaagatcatagcccgtgcattgtaactccttttgcatagtgtattagtgttgatgtaaaataggaacattcccctcgattgagagaagatgcattgctagattggggtggggtgtgtgtgtgttagggggtagagaagtggtaaccaacctggtaacctgtggctgtgatgccagttgcatcataaaaccaatctcgataagagcgagcaacctcaaaccagttgactgaccagatgaacagggattggcagcatctgatgaaatcaaattgcctggacaagcaactaagccgctccagcaaggagtcagaagctgacccgcagcatctgctacaagaaatcggtagcagcgcagctgatctgctgcgtagcgatcgatacaaactctctgcccactccagtagagtggttatgcatctcccaatccagctcgtcttgcaagcgtggatggcttcgtcgatgtgcggatgccatttgctgctgcttccctgtggctcgtcatcgccgatgacatccttatcgatctggtgataaccaatgagatcgaggatgtcttctgcttcgtacaaggcagacttgaccagcttcgccagcgtgtcgagattttgcacggctgatctctccttcttcgctttcctgtgcatcctctcttcctctatctttcgcagcatctgctccagcttcgggacagtctgaatctccagctcttggatctttggcgaagcgtcgaagaggtaggagatgaacctgttcacgagcaagctgatgataggcgacagcaaccaacctagcacggttatgacagagcccat
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| CDS seq | atgggctctgtcataaccgtgctaggttggttgctgtcgcctatcatcagcttgctcgtgaacaggttcatctcctacctcttcgacgcttcgccaaagatccaagagctggagattcagactgtcccgaagctggagcagatgctgcgaaagatagaggaagagaggatgcacaggaaagcgaagaaggagagatcagccgtgcaaaatctcgacacgctggcgaagctggtcaagtctgccttgtacgaagcagaagacatcctcgatctcattggttatcaccagatcgataaggatgtcatcggcgatgacgagccacagggaagcagcagcaaatggcatccgcacatcgacgaagccatccacgcttgcaagacgagctggattgggagatgcataaccactctactggagtgggcagagagtttgtatcgatcgctacgcagcagatcagctgcgctgctaccgatttcttgtagcagatgctgcgggtcagcttctgactccttgctggagcggcttagttgcttgtccaggcaatttgatttcatcagatgctgccaatccctgttcatctggtcagtcaactggtttgaggttgctcgctcttatcgagattggttttatgatgcaactggcatcacagccacaggttaccagacaagcagtggtgcctggaatgatattgtcaacatgaacaggagaagcattacatcgagtagtacacgcaaggtattcggtagagaccgggagcgtgatatgataagaagtatgcttcgtgaggatgattctttaccaagctccagtagcaggaaatgttattctgtaatttgcatatatggcattccagggtctggaaagactacactggcacagtatgtttgtgagtatgaaaaggaggataaagatagatactttgacacagtcatgctaatttatgtttctaagacttacagactggaagatatatttcgtgatatgctcgaggagatcacgcaaagccggcattctgaaattagtgactgcagaggtttggaagcaaaattggtggagaatttgagaggcaaacggttcttgttggtactggatgatctgtgggtcaatgatgagaatcatgagaagctgctttctccactcaatgttgggaagtcaggaagcagaatcctggtgacagcccagagtaaagaggcagctctaggctctaataggcttattccaatatctgatctggaagaggagcaatacttctcaatgttcatgcattatgcacttgacagtacaattttcgatgatcgagaatacataccgattgggaggaaaatcgctaagaagctgaacagatcacctattgcagcagtgacagtggcaggtcagctctggagaaacccagatatcagattttggcaaacaaccgcgaacctcgatgtgctgaataagaccaagggagctctttggtggagctataatcaacttgttgtggatgtcaggagatgcttccagtactgtagcatcttccccagaaggtatgagcttgaacgtgacaatcttgttcgtatgtggatagcgcaaggatttgtgaaggacaatgatggaaacaatgaggacgtagaagatgttgtagagggaatgaaccaagatgattttgagcgtgtgctgaagaagctaacaaagttgagggtggtgcacttggatttgagacatttgagcagggtgccaccatgcatcggtggactgaaacatcttcgttatcttggcatcatgtcacctcctccccacagcctgattctgccggctgaattttccaagctttaccatcttcaggagctctctgtccatcctaacactcgcttgcattgtccatcccagctgaagatcgccaacctgatcaacctgaggtacatgctgacatggtatggcctgaacattcctgatgttgggaagctgacatctctccgagctctgtatcacttctatgtgaggaaggagaaaggatacgagatacagcagctggagcacctgaacaaccttcgtggcaagctgttcatcgactgcatcgagaatgttcagagcaaggaggaagctgttcgagccaggctatctgacaaggtatatctcactgagctgacgctacggtggggtggcactgacgaacgctgctcgaagaaagcgttggaatcatacaagaggctgttctttccacctgtaacagagatcaagcaacatcaacctccagaacttcaggaggaggttcttgaggggctccgtccaccgtcggggattacagtactttgcatcagggattacggtggtgtgatatacccaagctggttgacaggagacggttgcgacaaggaacaggaacaagatcgcccggcattgcagaatcttatgttctggagttgcaagggatcgagtgatcccccaaagattggtgaattcttcacctgcctccatacactgtcagttacagactgcagctggaactatttgcctgtcaaattgtgccgcctgaaaacactcagggaattgatcgtccaggagtgtcccaacatgatgacactgcccaagcttccccaatcgctcaagagcattgtaatctctggttgcctcccttctcttgcggacacctgtctgacccctggacatccaaattggcgaaggattaagcatatcgatcagcaaataatccgttga
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| Protein seq | MGSVITVLGWLLSPIISLLVNRFISYLFDASPKIQELEIQTVPKLEQMLRKIEEERMHRKAKKERSAVQNLDTLAKLVKSALYEAEDILDLIGYHQIDKDVIGDDEPQGSSSKWHPHIDEAIHACKTSWIGRCITTLLEWAESLYRSLRSRSAALLPISCSRCCGSASDSLLERLSCLSRQFDFIRCCQSLFIWSVNWFEVARSYRDWFYDATGITATGYQTSSGAWNDIVNMNRRSITSSSTRKVFGRDRERDMIRSMLREDDSLPSSSSRKCYSVICIYGIPGSGKTTLAQYVCEYEKEDKDRYFDTVMLIYVSKTYRLEDIFRDMLEEITQSRHSEISDCRGLEAKLVENLRGKRFLLVLDDLWVNDENHEKLLSPLNVGKSGSRILVTAQSKEAALGSNRLIPISDLEEEQYFSMFMHYALDSTIFDDREYIPIGRKIAKKLNRSPIAAVTVAGQLWRNPDIRFWQTTANLDVLNKTKGALWWSYNQLVVDVRRCFQYCSIFPRRYELERDNLVRMWIAQGFVKDNDGNNEDVEDVVEGMNQDDFERVLKKLTKLRVVHLDLRHLSRVPPCIGGLKHLRYLGIMSPPPHSLILPAEFSKLYHLQELSVHPNTRLHCPSQLKIANLINLRYMLTWYGLNIPDVGKLTSLRALYHFYVRKEKGYEIQQLEHLNNLRGKLFIDCIENVQSKEEAVRARLSDKVYLTELTLRWGGTDERCSKKALESYKRLFFPPVTEIKQHQPPELQEEVLEGLRPPSGITVLCIRDYGGVIYPSWLTGDGCDKEQEQDRPALQNLMFWSCKGSSDPPKIGEFFTCLHTLSVTDCSWNYLPVKLCRLKTLRELIVQECPNMMTLPKLPQSLKSIVISGCLPSLADTCLTPGHPNWRRIKHIDQQIIR |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0023510 | OsLiXu_11g0023510.01 | Chr11 | 30856709 | 30860419 | - | NAM | ||
| CDS seq | atgggctctgtcataaccgtgctaggttggttgctgtcgcctatcatcagcttgctcgtgaacaggttcatctcctacctcttcgacgcttcgccaaagatccaagagctggagattcagactgtcccgaagctggagcagatgctgcgaaagatagaggaagagaggatgcacaggaaagcgaagaaggagagatcagccgtgcaaaatctcgacacgctggcgaagctggtcaagtctgccttgtacgaagcagaagacatcctcgatctcattggttatcaccagatcgataaggatgtcatcggcgatgacgagccacagggaagcagcagcaaatggcatccgcacatcgacgaagccatccacgcttgcaagacgagctggattgggagatgcataaccactctactggagtgggcagagagtttgtatcgatcgctacgcagcagatcagctgcgctgctaccgatttcttgtagcagatgctgcgggtcagcttctgactccttgctggagcggcttagttgcttgtccaggcaatttgatttcatcagatgctgccaatccctgttcatctggtcagtcaactggtttgaggttgctcgctcttatcgagattggttttatgatgcaactggcatcacagccacaggttaccagacaagcagtggtgcctggaatgatattgtcaacatgaacaggagaagcattacatcgagtagtacacgcaaggtattcggtagagaccgggagcgtgatatgataagaagtatgcttcgtgaggatgattctttaccaagctccagtagcaggaaatgttattctgtaatttgcatatatggcattccagggtctggaaagactacactggcacagtatgtttgtgagtatgaaaaggaggataaagatagatactttgacacagtcatgctaatttatgtttctaagacttacagactggaagatatatttcgtgatatgctcgaggagatcacgcaaagccggcattctgaaattagtgactgcagaggtttggaagcaaaattggtggagaatttgagaggcaaacggttcttgttggtactggatgatctgtgggtcaatgatgagaatcatgagaagctgctttctccactcaatgttgggaagtcaggaagcagaatcctggtgacagcccagagtaaagaggcagctctaggctctaataggcttattccaatatctgatctggaagaggagcaatacttctcaatgttcatgcattatgcacttgacagtacaattttcgatgatcgagaatacataccgattgggaggaaaatcgctaagaagctgaacagatcacctattgcagcagtgacagtggcaggtcagctctggagaaacccagatatcagattttggcaaacaaccgcgaacctcgatgtgctgaataagaccaagggagctctttggtggagctataatcaacttgttgtggatgtcaggagatgcttccagtactgtagcatcttccccagaaggtatgagcttgaacgtgacaatcttgttcgtatgtggatagcgcaaggatttgtgaaggacaatgatggaaacaatgaggacgtagaagatgttgtagagggaatgaaccaagatgattttgagcgtgtgctgaagaagctaacaaagttgagggtggtgcacttggatttgagacatttgagcagggtgccaccatgcatcggtggactgaaacatcttcgttatcttggcatcatgtcacctcctccccacagcctgattctgccggctgaattttccaagctttaccatcttcaggagctctctgtccatcctaacactcgcttgcattgtccatcccagctgaagatcgccaacctgatcaacctgaggtacatgctgacatggtatggcctgaacattcctgatgttgggaagctgacatctctccgagctctgtatcacttctatgtgaggaaggagaaaggatacgagatacagcagctggagcacctgaacaaccttcgtggcaagctgttcatcgactgcatcgagaatgttcagagcaaggaggaagctgttcgagccaggctatctgacaaggtatatctcactgagctgacgctacggtggggtggcactgacgaacgctgctcgaagaaagcgttggaatcatacaagaggctgttctttccacctgtaacagagatcaagcaacatcaacctccagaacttcaggaggaggttcttgaggggctccgtccaccgtcggggattacagtactttgcatcagggattacggtggtgtgatatacccaagctggttgacaggagacggttgcgacaaggaacaggaacaagatcgcccggcattgcagaatcttatgttctggagttgcaagggatcgagtgatcccccaaagattggtgaattcttcacctgcctccatacactgtcagttacagactgcagctggaactatttgcctgtcaaattgtgccgcctgaaaacactcagggaattgatcgtccaggagtgtcccaacatgatgacactgcccaagcttccccaatcgctcaagagcattgtaatctctggttgcctcccttctcttgcggacacctgtctgacccctggacatccaaattggcgaaggattaagcatatcgatcagcaaataatccgttga
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| Protein seq | MGSVITVLGWLLSPIISLLVNRFISYLFDASPKIQELEIQTVPKLEQMLRKIEEERMHRKAKKERSAVQNLDTLAKLVKSALYEAEDILDLIGYHQIDKDVIGDDEPQGSSSKWHPHIDEAIHACKTSWIGRCITTLLEWAESLYRSLRSRSAALLPISCSRCCGSASDSLLERLSCLSRQFDFIRCCQSLFIWSVNWFEVARSYRDWFYDATGITATGYQTSSGAWNDIVNMNRRSITSSSTRKVFGRDRERDMIRSMLREDDSLPSSSSRKCYSVICIYGIPGSGKTTLAQYVCEYEKEDKDRYFDTVMLIYVSKTYRLEDIFRDMLEEITQSRHSEISDCRGLEAKLVENLRGKRFLLVLDDLWVNDENHEKLLSPLNVGKSGSRILVTAQSKEAALGSNRLIPISDLEEEQYFSMFMHYALDSTIFDDREYIPIGRKIAKKLNRSPIAAVTVAGQLWRNPDIRFWQTTANLDVLNKTKGALWWSYNQLVVDVRRCFQYCSIFPRRYELERDNLVRMWIAQGFVKDNDGNNEDVEDVVEGMNQDDFERVLKKLTKLRVVHLDLRHLSRVPPCIGGLKHLRYLGIMSPPPHSLILPAEFSKLYHLQELSVHPNTRLHCPSQLKIANLINLRYMLTWYGLNIPDVGKLTSLRALYHFYVRKEKGYEIQQLEHLNNLRGKLFIDCIENVQSKEEAVRARLSDKVYLTELTLRWGGTDERCSKKALESYKRLFFPPVTEIKQHQPPELQEEVLEGLRPPSGITVLCIRDYGGVIYPSWLTGDGCDKEQEQDRPALQNLMFWSCKGSSDPPKIGEFFTCLHTLSVTDCSWNYLPVKLCRLKTLRELIVQECPNMMTLPKLPQSLKSIVISGCLPSLADTCLTPGHPNWRRIKHIDQQIIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0682600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0682600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024200 | RBH | 0.0 | 0.750181 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024150 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023700 | RBH | 0.071766 | 0.669510 | 0.198169 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023540 | RBH | 0.0 | 0.064757 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024010 | RBH | 0.0 | 0.764186 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0436600 | RBH | 0.0125795 | 0.0753605 | 0.007792 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024390 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0435600 | RBH | 0.2172335 | 0.077836 | 1.2482735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024230 | RBH | 0.0 | 0.017078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023910 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023910 | RBH | 0.0 | 0.255802 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024110 | RBH | 0.0 | 0.0 | 0.0 |
