Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_11g0023100 OGI:11077650 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr11:30468514-30474148
Gene Symbol -
DNA seq

atggaacaaatacgatgctttataagtgatgtggagcgaaggggcatggaagactcatcaatacacaattggatttctcgtctaaaagatgctatgtatgatgctgatgacattatcgatttggctagctttgaaggaagcaagctattaaatggccattcttgttcaccgagaaaaacaattgcatgtagtgggctttcacttctctcttgcttttccaatattcgggttcaccatgagattggtaataaaattagaagcctgaacagaaaactagaagaaatagcaaaggataaaatatttgtaacacttgagaatacacagtcatctcataaagattcaacatcagaattgagaaaaagttctcaaattgctgaatccaaccttgtggggaaagagatattacatgcttctagaaaattggtgagccaggttcttacacacaaggaaaagaagacttacaagcttgctattattggaacagggggaatcggaaagacaacacttgctcagaaagtattcaatgatgagaaattaaaacaaagcttcgacaaacatgcatggatctgtgtttctcaggactactccccagcctctgttttgggacaactacttagaaccatcgacgctcaatgcaaacaagaagaatcagttggcgagttacaaagcaagcttgaatcggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtgtggaccaatctactacgaactccactgtatgctgcaacctcgggaatagttttgataactactaggcaagatactgtcgctagagaaattggggttgaggaaccacatcatatcgacctaatgtcaccggctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttggcaagcaaagataaaacagagaacgaatggaaaaagattttagctaattacgtttggttcatggataaacttcctaaggaaataagaggtgctctatatctaagctacgatgatttaccacagcatttgaagcaatgttttctttattgtattgtatatcctgaagactgcaccattcgtcgtgatgatcttatcaggttgtgggttgccgaaggctttgtagaagtgcacaaagatcaactactagaagatacagtagaagaatactactatgagctaataagtaggaatctcctccaaccggttgacacatcttttgatcagagcaaatgcaaaatgcatgatctcttaaggcaacttgcttgccatctatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaattgagccgcattttagctatcaccgagaaaggtatggtagtcatacctagcatgggtaaggaggagattaagttgagaacttttagaacccaaccaaatccactgggaattgagaagacatttttcatgagattcacatatcttcgtgttttggacttgactgacttacttgtggaagaaataccagattgtgttggatatttaattcatctacgtttacttgatcttggtggaaccaacatatcttgtcttccaaactctattggtgctctaaaaaacctccagatgtgtaacatcccgatctagggcttaataggattaatagaatactcatatcaacaagttgcaacttcttttccggaagccaatctccaaagaactccagggttaagcgtgcttggcctggagcaatttgggatgggtgaccgatcggaaaattcttcccgggtgcacacgagtgaggacaaagtgtgcagaaaagatatgtgttggtctgtgagggcagtctatgacctatgaaagctatcagatgtaagcgggcccggccagtgtagaccgggagtggttacacatatgtgttggtctgtgagggcagtctatgacctatgaaagctatcagatgtaagcgggcccggccagtgtagaccgggagtggttacacagcatggcactggacacatggacgtggccaagagaggacgttcctagcctagggttgatcgacgggggcgtcgatctctcttaagggggtgagggtgtaacatcccggtctagggcttaataggattaatagaatactcatatcaacaagttgcaacttctttttcagaagccaatctccaaagaactccagggttaagcgtgcttggcctggagcaatttgggatgagtgaccgaccgggaaattcttcccgggtgcacacgagtgaggacaaagtgtgcagaaaagatatgtgttggtctgtgagggcagtctatgacctatgaaagctatcagatgtaagcggcctgggggaaggcgggacgttacaagatgttaaacatgggatgggtgaccgaccaggaaattcttcccgggtgcacacgagtgaggaccgaccaggaaattcttcccgggtgcacacgagtgaggacaaagtgtgcagaaaagatatgtgttggtctgtgagggcagtctatgacctatgaaagctatcagatgtaagcgggcccggcctgggggaaggcgggacgttacaagatgttaaacttacagtggtgtaaatctttgtacggtttgcccagcacgatcactcggttaagcaatttaaggcggcttggtcttgattttacaccaataaatcaggttccaagagggataggaagacttgaattcctcaatgatttagaaggatttcctgttggaggtggaagtgacaatactaaaatgcaagacggatggaacttgcaggagttatctcatctttcacagttacgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaaagcatcttaaaagtctacatctatgctgcactgaaccgactgatgaagcatattcagaggaagccattagcaatgtcgagatgatctttgagcagctaagtcgtccacgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttcccttttatcttcactggcatatttgaaactcaaagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcaaattgctggccatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaaaaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggagagaggatggaactgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttggaacttgtgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaagagccaattaattagatggcacaaggtatgtacactgattggttgggttttttcactggaataaactaatcatagggttgtacattcatgctgctcctcagctcttcagttgtatgcagctattcttagcttttgatagtctccttagatgttcatgttgtgtgcattgactgattgtttgatgatctatatgatttagttctttttttcattagtgttgcatgtaaccatttcaccgtggttaatgttttcataaaatggtgcatacacatcaacaaattaattagatggccaaatcttttatcttctcatgatcttattaacatgcatcctgcacgtacggtgtattccagatgaatgtattgtcctatatgtactacaacatgatcgtatgcagtagtgttcctagctctgcacacagagatagagattactgctactccaaaagaaaattgtatgggttatattgtcaccaaacaatgctatgatggcattgatatattcactatatatatgccagtagttatatcacatatgcatatatccatccaaggacttggggacaacataaatggtttagcatttggtacacaggctgcataagttcacgactaaacataatggacttcgaagtaatccttgattcagctcttgaatgtgctagctatgattgactgtgtacatccttcaggatgtagaggtcggtttttatttaatccattatctaaaaatgtgctatatatgatgaagaccagctcacatgcatttagccttcaattctacaagtgtgttctatgtcatatcaatgtgcgcatttagcattcactatcttataaaaaaacacaaatacacatgaattttcgcaagacattaggcctatagagtagttttttagatttgaccaaaaaatatgtcaggcccaatgtttcagattccttgtagcctatgagcaggatattgaatatggaagtgttgtgcccaacatctgttcctagcgtagggctcctaattaaggtttgtttggtgaaaaacaaaagccacctaatgtctttgtattggttcaaattgattgatatttttgttcgtattacatctgttaaaataagcagtggatattgccaagcgacatgcctatgtatagtccatatgtgtattttccttatactttttgtaatgcacgtctgatgtttggtaagttcaattgcagaaaatatgattgttgtaaaacggatgtcacttgtattttcttttccttaattaagttatttaattaccaaattgcttatgtatatacatccatgattaattgtgtgcgcttatttgtattgtaggttaatcttgaaggatttgggctgcagtcacctgtaatctatatttttgtctttacctagttactggtctttaaaatattaaaaaaatttaaaaaaatgaaaaatttaaaaaaacaaaaatatcaaaaaatgggaaaatgccaaaaaaatggttatattttctttagctcttgtaaaatacattgccgtgttttattaggtgtgtgtttcttttttaaaatttttttttattgtaggtgtgtaggtaactccgcctatgtcatcctaggtttagtaaatgacatagccggtcccaagcccagaaaaaggaggggaacatcttgtatagatgttggttgaaatgatgctctccttccacatagta

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CDS seq

atggaacaaatacgatgctttataagtgatgtggagcgaaggggcatggaagactcatcaatacacaattggatttctcgtctaaaagatgctatgtatgatgctgatgacattatcgatttggctagctttgaaggaagcaagctattaaatggccattcttgttcaccgagaaaaacaattgcatgtagtgggctttcacttctctcttgcttttccaatattcgggttcaccatgagattggtaataaaattagaagcctgaacagaaaactagaagaaatagcaaaggataaaatatttgtaacacttgagaatacacagtcatctcataaagattcaacatcagaattgagaaaaagttctcaaattgctgaatccaaccttgtggggaaagagatattacatgcttctagaaaattggtgagccaggttcttacacacaaggaaaagaagacttacaagcttgctattattggaacagggggaatcggaaagacaacacttgctcagaaagtattcaatgatgagaaattaaaacaaagcttcgacaaacatgcatggatctgtgtttctcaggactactccccagcctctgttttgggacaactacttagaaccatcgacgctcaatgcaaacaagaagaatcagttggcgagttacaaagcaagcttgaatcggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtgtggaccaatctactacgaactccactgtatgctgcaacctcgggaatagttttgataactactaggcaagatactgtcgctagagaaattggggttgaggaaccacatcatatcgacctaatgtcaccggctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttggcaagcaaagataaaacagagaacgaatggaaaaagattttagctaattacgtttggttcatggataaacttcctaaggaaataagaggtgctctatatctaagctacgatgatttaccacagcatttgaagcaatgttttctttattgtattgtatatcctgaagactgcaccattcgtcgtgatgatcttatcaggttgtgggttgccgaaggctttgtagaagtgcacaaagatcaactactagaagatacagtagaagaatactactatgagctaataagtaggaatctcctccaaccggttgacacatcttttgatcagagcaaatgcaaaatgcatgatctcttaaggcaacttgcttgccatctatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaattgagccgcattttagctatcaccgagaaaggtatggtagtcatacctagcatgggtaaggaggagattaagttgagaacttttagaacccaaccaaatccactgggaattgagaagacatttttcatgagattcacatatcttcgtgttttggacttgactgacttacttgtggaagaaataccagattgtgttccaagagggataggaagacttgaattcctcaatgatttagaaggatttcctgttggaggtggaagtgacaatactaaaatgcaagacggatggaacttgcaggagttatctcatctttcacagttacgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaaagcatcttaaaagtctacatctatgctgcactgaaccgactgatgaagcatattcagaggaagccattagcaatgtcgagatgatctttgagcagctaagtcgtccacgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttcccttttatcttcactggcatatttgaaactcaaagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcaaattgctggccatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaaaaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggagagaggatggaactgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttggaacttgtgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaa

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Protein seq

MEQIRCFISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLASFEGSKLLNGHSCSPRKTIACSGLSLLSCFSNIRVHHEIGNKIRSLNRKLEEIAKDKIFVTLENTQSSHKDSTSELRKSSQIAESNLVGKEILHASRKLVSQVLTHKEKKTYKLAIIGTGGIGKTTLAQKVFNDEKLKQSFDKHAWICVSQDYSPASVLGQLLRTIDAQCKQEESVGELQSKLESAIKDKSYFLVLDDVWQSDVWTNLLRTPLYAATSGIVLITTRQDTVAREIGVEEPHHIDLMSPAVGWELLWKSINIEDEKEVQNLRDIGIEIVQKCGGLPLAIKVIARVLASKDKTENEWKKILANYVWFMDKLPKEIRGALYLSYDDLPQHLKQCFLYCIVYPEDCTIRRDDLIRLWVAEGFVEVHKDQLLEDTVEEYYYELISRNLLQPVDTSFDQSKCKMHDLLRQLACHLSREECYIGDPTSLVDNNMCKLSRILAITEKGMVVIPSMGKEEIKLRTFRTQPNPLGIEKTFFMRFTYLRVLDLTDLLVEEIPDCVPRGIGRLEFLNDLEGFPVGGGSDNTKMQDGWNLQELSHLSQLRRLDLNKLERATPRSSTDALLLTDKKHLKSLHLCCTEPTDEAYSEEAISNVEMIFEQLSRPRNLEDLMIVLFFGRRFPTWLSTSLLSSLAYLKLKDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLKLLAIEDMPNWEEWSFVEEEEEKEVQEEEAAAAAKEGREDGTAASKQKGEEAPSPTPRSSWLLPCLNELELVNCPKLRALPPQLGQQATNLKELDIRRARCLKTVEHLPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVEMLGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNEWF

Function Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0023100 OsLiXu_11g0023100.01 Chr11 30468514 30474148 + NAM
CDS seq

atggaacaaatacgatgctttataagtgatgtggagcgaaggggcatggaagactcatcaatacacaattggatttctcgtctaaaagatgctatgtatgatgctgatgacattatcgatttggctagctttgaaggaagcaagctattaaatggccattcttgttcaccgagaaaaacaattgcatgtagtgggctttcacttctctcttgcttttccaatattcgggttcaccatgagattggtaataaaattagaagcctgaacagaaaactagaagaaatagcaaaggataaaatatttgtaacacttgagaatacacagtcatctcataaagattcaacatcagaattgagaaaaagttctcaaattgctgaatccaaccttgtggggaaagagatattacatgcttctagaaaattggtgagccaggttcttacacacaaggaaaagaagacttacaagcttgctattattggaacagggggaatcggaaagacaacacttgctcagaaagtattcaatgatgagaaattaaaacaaagcttcgacaaacatgcatggatctgtgtttctcaggactactccccagcctctgttttgggacaactacttagaaccatcgacgctcaatgcaaacaagaagaatcagttggcgagttacaaagcaagcttgaatcggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtgtggaccaatctactacgaactccactgtatgctgcaacctcgggaatagttttgataactactaggcaagatactgtcgctagagaaattggggttgaggaaccacatcatatcgacctaatgtcaccggctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttggcaagcaaagataaaacagagaacgaatggaaaaagattttagctaattacgtttggttcatggataaacttcctaaggaaataagaggtgctctatatctaagctacgatgatttaccacagcatttgaagcaatgttttctttattgtattgtatatcctgaagactgcaccattcgtcgtgatgatcttatcaggttgtgggttgccgaaggctttgtagaagtgcacaaagatcaactactagaagatacagtagaagaatactactatgagctaataagtaggaatctcctccaaccggttgacacatcttttgatcagagcaaatgcaaaatgcatgatctcttaaggcaacttgcttgccatctatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaattgagccgcattttagctatcaccgagaaaggtatggtagtcatacctagcatgggtaaggaggagattaagttgagaacttttagaacccaaccaaatccactgggaattgagaagacatttttcatgagattcacatatcttcgtgttttggacttgactgacttacttgtggaagaaataccagattgtgttccaagagggataggaagacttgaattcctcaatgatttagaaggatttcctgttggaggtggaagtgacaatactaaaatgcaagacggatggaacttgcaggagttatctcatctttcacagttacgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaaagcatcttaaaagtctacatctatgctgcactgaaccgactgatgaagcatattcagaggaagccattagcaatgtcgagatgatctttgagcagctaagtcgtccacgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttcccttttatcttcactggcatatttgaaactcaaagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcaaattgctggccatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaaaaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggagagaggatggaactgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttggaacttgtgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaa

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Protein seq

MEQIRCFISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLASFEGSKLLNGHSCSPRKTIACSGLSLLSCFSNIRVHHEIGNKIRSLNRKLEEIAKDKIFVTLENTQSSHKDSTSELRKSSQIAESNLVGKEILHASRKLVSQVLTHKEKKTYKLAIIGTGGIGKTTLAQKVFNDEKLKQSFDKHAWICVSQDYSPASVLGQLLRTIDAQCKQEESVGELQSKLESAIKDKSYFLVLDDVWQSDVWTNLLRTPLYAATSGIVLITTRQDTVAREIGVEEPHHIDLMSPAVGWELLWKSINIEDEKEVQNLRDIGIEIVQKCGGLPLAIKVIARVLASKDKTENEWKKILANYVWFMDKLPKEIRGALYLSYDDLPQHLKQCFLYCIVYPEDCTIRRDDLIRLWVAEGFVEVHKDQLLEDTVEEYYYELISRNLLQPVDTSFDQSKCKMHDLLRQLACHLSREECYIGDPTSLVDNNMCKLSRILAITEKGMVVIPSMGKEEIKLRTFRTQPNPLGIEKTFFMRFTYLRVLDLTDLLVEEIPDCVPRGIGRLEFLNDLEGFPVGGGSDNTKMQDGWNLQELSHLSQLRRLDLNKLERATPRSSTDALLLTDKKHLKSLHLCCTEPTDEAYSEEAISNVEMIFEQLSRPRNLEDLMIVLFFGRRFPTWLSTSLLSSLAYLKLKDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLKLLAIEDMPNWEEWSFVEEEEEKEVQEEEAAAAAKEGREDGTAASKQKGEEAPSPTPRSSWLLPCLNELELVNCPKLRALPPQLGQQATNLKELDIRRARCLKTVEHLPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVEMLGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNEWF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0676050 SBH 0.0 0.456057 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g45190 SBH 0.000000 0.082773 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0676050 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0023630 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0023800 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0023450 SBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0023140 SBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0023510 SBH 0.000000 0.279106 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0410200 SBH 0.016715 0.3187185 0.003874
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0023970 RBH 0.036124 0.004755 0.026227
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0430200 SBH 14.200319 23.9624835 0.1261395
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0023840 RBH 1.203734 0.746390 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0023840 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0023300 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0022900 SBH 0.169465 0.0 0.076431
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0023300 RBH 0.000000 0.393410 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G023300 RBH 0.434635 0.913598 2.277780
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0023730 RBH 1.486182 20.188963 5.723283
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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