Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0022600 | OGI:11076310 | 8/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:29886274-29889895 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggggtcttcaatttctaaaatgttgggcctgttaggatgacgctttgctgcttctttccaacgagttattacttttctcttgtcgactactttttggagagcgacttccttgagcgtcttgagttttgcgatttcaattttggaaggttccaatagttgaggtgagaacagatgaagtgagacaatatgtttgacagctccagattggattgttatgccaggtagctcctttgagctctcaaggcatatccgcttcaggcttgggaaatagacaggtttggattgatgtccatgttcagattcggattcggattcggactcaggttcaggtccagattctatgacaagatcaccaaggttatcttcaaccagcttaagatatttcaatacacccaatcctctcacgccggaaatgatgtcttgtcccctcagattagtcaaccaaaagcacagctccgtgagaccagtcagatcgacgataaatcgagggaattccttgagcttaccctgcagtttcagggagttgagtgtacctggagctgctcgtagaaaatccaggaactctgttttgcagcctcctaccaaatcgatcgatagggagcgatgaccaggcgtgttgtgcacattacggatgaatttctcgatggcttttgaaacatgagtcaagtttgctttgtctgcagtgggtttgcactgtatcttaatcttcctcaacatactcatatgaaacaagagccgtgatacccctctgctcttaccgatgacgaatcctgccagcgtttccagctctgttttcgacagcttcttcttaagccccttcactggaagtcaaatctcgaaagccggaacactccgaggaggtgttttagctccggtagcaagatggcttcaatgggcgcctcgaccgtattggcgttgcttcccctcaagtccagtgtctgtaatcgtttcagcctcgctattttccttggaaccgcagtgatactgcccccgaggctcaggtatctcagcagcagcagcggcgtgtcgcatatttcttggaggtgactgttgtccaggccattgcactgctccagatccaacacccgcagcagcttataatccgcgaacttcacaccgagtcccacggtaactgcatctttcagtttggcagggaacaccgccagagtccggaggcgactgaacagggtgctgccgtctctttcggcaatgttcttgccgttgtaattatggagcgaaagccggcggatgtactcgtcggtgcgcggttgttggtgacaatgcaaaaccctcatgaagccttcgcacatggacttgtgcgagatgtattccagcatcatcccagggggttggcatctcttcacgttttcatctatgggctgaatgacattcctgtcgatgaggacgctgagattcttggcagcaacatcgacgggatcagtgctgcttatcccgtcctgtatgagctcttccgccacccaacgccttatcagggaattcctcttcacggggtgaccgcgtgggaacatggagaagtagagcaaacaggactggatgatggcatcgttatgcaggctgtggtagttatcgaatagcacccgttgcatccttgctaatgggttgttgtcgctgcagcagccgtcgtcacaccctttcgctgatcggtcgtccctgcagcgatcatcgcaatcgcggcaggcctgtaacgcttcttcacaaatcttggctatcacgttctctttcgccgatacagtattgatctctgccacattcctcttcatgaattcagctatgctaaccagagcaagtggtagaccgtcacatctgtcgatggctgataatgtctcatttctatccacttctggatatttctccatggaggctacttggaagaacaactcttttgggtcgtcacaactaagtgttttgactttgtacatgtgacggctatcagagttgatgtcatatgctactgactgaacacttgttgtcacgataattctgctgtcttccatgtctgcagggaactcacgtattataccgtgcagtacttccctcctctgcacgtcatcgattacaatcaagtacctacaagtgataaattaagaacaaaaggttaatacatggatccgatttccaatgagccacgtctttaaatctagagaaaaattcactgcactggaaaataaaatccaaaccatgtaccgctggaatgtttcaaattagagagaattcgatagttgtcatttcaaagagtgatagtacttaagtattgcctctatactttttcgctttacaagtgaaaattcaatgttttactttattgagaaattccctagtttttaatgataataaaaaatggtttagatcttcatatgtcacgcgtcaaagttgatgtggttttgtgaatcttggaccataataggtggggttttatgaaatttactccactattaataaaataaaattgttttgtccttaaaacgaaatttgtatgtaaccttgaacaaaagttaggtgtaaaacagataacaaaatagcatgtgcacaatgcgtgagttactgactagtactagtaactggagtagtaactaacaattaagtctgtacaaactatgccatttagatatttctcagtaactccagataaatagataatctctgtggacaaacataagtagatagataatcacctgttggtccctaggcatgatttgagatagacattttcggctagtggtgtttcagaggaggcattgttgacttttgggccttcgttggagctgctcccaacatgaacacccaccttcctgatgcgtttagaggtactcgcgccatggagatcaatctctgggatattgttggatgaactggcaccatctacgcccttgcccttgcccttgctcttgtcgacttgcttgcctaattcctcgagtatctccttgagaacctcgcctgccctcttgcccgaggcgttaacccaagcatggcgagggaagtactccttgctcacgctagtgtaaactttgtcagctaggaaagtcttacctatgccaccaaagcccacgatacagatcaccctgagcttcctctccgattggcggtcggatcgccgcaccaccagctcccggagctcttcgagagcccccttcatccccaccatcttgtgacgggacgctggaaggggaggaagcttgtggtggtagagatcgccctccatcgccaccatcttctgaccagtagctggtggattattggaggtcgccggagccggaggctctttgcctattttctcacatctttgcttcaagccaagaatctgtccggagagctcttgacgggcttcctttgtctccgcgacccggaactggtcgatccagtcttcgatgtcatttgccaggcgtctcacttgtgaaatccaaactttctgggagttgctgccgctattggagcgatgatctagaatggcagcatctattaactcgagctcatctcggatggagtcaacatcacgctgaaggccctcgaacttcttcccttccttccgtaaccacgaaacgaattccggcagaactctgctcgctaatccggcgattatgggaccgaggctggcttccat
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| CDS seq | atggaagccagcctcggtcccataatcgccggattagcgagcagagttctgccggaattcgtttcgtggttacggaaggaagggaagaagttcgagggccttcagcgtgatgttgactccatccgagatgagctcgagttaatagatgctgccattctagatcatcgctccaatagcggcagcaactcccagaaagtttggatttcacaagtgagacgcctggcaaatgacatcgaagactggatcgaccagttccgggtcgcggagacaaaggaagcccgtcaagagctctccggacagattcttggcttgaagcaaagatgtgagaaaataggcaaagagcctccggctccggcgacctccaataatccaccagctactggtcagaagatggtggcgatggagggcgatctctaccaccacaagcttcctccccttccagcgtcccgtcacaagatggtggggatgaagggggctctcgaagagctccgggagctggtggtgcggcgatccgaccgccaatcggagaggaagctcagggtgatctgtatcgtgggctttggtggcataggtaagactttcctagctgacaaagtttacactagcgtgagcaaggagtacttccctcgccatgcttgggttaacgcctcgggcaagagggcaggcgaggttctcaaggagatactcgaggaattaggcaagcaagtcgacaagagcaagggcaagggcaagggcgtagatggtgccagttcatccaacaatatcccagagattgatctccatggcgcgagtacctctaaacgcatcaggaaggtgggtgttcatgttgggagcagctccaacgaaggcccaaaagtcaacaatgcctcctctgaaacaccactagccgaaaatgtctatctcaaatcatgcctagggaccaacaggtacttgattgtaatcgatgacgtgcagaggagggaagtactgcacggtataatacgtgagttccctgcagacatggaagacagcagaattatcgtgacaacaagtgttcagtcagtagcatatgacatcaactctgatagccgtcacatgtacaaagtcaaaacacttagttgtgacgacccaaaagagttgttcttccaagtagcctccatggagaaatatccagaagtggatagaaatgagacattatcagccatcgacagatgtgacggtctaccacttgctctggttagcatagctgaattcatgaagaggaatgtggcagagatcaatactgtatcggcgaaagagaacgtgatagccaagatttgtgaagaagcgttacaggcctgccgcgattgcgatgatcgctgcagggacgaccgatcagcgaaagggtgtgacgacggctgctgcagcgacaacaacccattagcaaggatgcaacgggtgctattcgataactaccacagcctgcataacgatgccatcatccagtcctgtttgctctacttctccatgttcccacgcggtcaccccgtgaagaggaattccctgataaggcgttgggtggcggaagagctcatacaggacgggataagcagcactgatcccgtcgatgttgctgccaagaatctcagcgtcctcatcgacaggaatgtcattcagcccatagatgaaaacgtgaagagatgccaaccccctgggatgatgctggaatacatctcgcacaagtccatgtgcgaaggcttcatgagggttttgcattgtcaccaacaaccgcgcaccgacgagtacatccgccggctttcgctccataattacaacggcaagaacattgccgaaagagacggcagcaccctgttcagtcgcctccggactctggcggtgttccctgccaaactgaaagatgcagttaccgtgggactcggtgtgaagttcgcggattataagctgctgcgggtgttggatctggagcagtgcaatggcctggacaacagtcacctccaagaaatatgcgacacgccgctgctgctgctgagatacctgagcctcgggggcagtatcactgcggttccaaggaaaatagcgaggctgaaacgattacagacactggacttgaggggaagcaacgccaatacggtcgaggcgcccattgaagccatcttgctaccggagctaaaacacctcctcggagggcttaagaagaagctgtcgaaaacagagctggaaacgctggcaggattcgtcatcggtaagagcagaggggtatcacggctcttgtttcatatgagtatgttgaggaagattaagatacagtgcaaacccactgcagacaaagcaaacttgactcatgtttcaaaagccatcgagaaattcatccgtaatgtgcacaacacgcctggtcatcgctccctatcgatcgatttggtaggaggctgcaaaacagagttcctggattttctacgagcagctccaggtacactcaactccctgaaactgcagggtaagctcaaggaattccctcgatttatcgtcgatctgactggtctcacggagctgtgcttttggttgactaatctgaggggacaagacatcatttccggcacgctcaaggaagtcgctctccaaaaagtagtcgacaagagaaaagtaataactcgttggaaagaagcagcaaagcgtcatcctaacaggcccaacattttagaaattgaagacccctga
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| Protein seq | MEASLGPIIAGLASRVLPEFVSWLRKEGKKFEGLQRDVDSIRDELELIDAAILDHRSNSGSNSQKVWISQVRRLANDIEDWIDQFRVAETKEARQELSGQILGLKQRCEKIGKEPPAPATSNNPPATGQKMVAMEGDLYHHKLPPLPASRHKMVGMKGALEELRELVVRRSDRQSERKLRVICIVGFGGIGKTFLADKVYTSVSKEYFPRHAWVNASGKRAGEVLKEILEELGKQVDKSKGKGKGVDGASSSNNIPEIDLHGASTSKRIRKVGVHVGSSSNEGPKVNNASSETPLAENVYLKSCLGTNRYLIVIDDVQRREVLHGIIREFPADMEDSRIIVTTSVQSVAYDINSDSRHMYKVKTLSCDDPKELFFQVASMEKYPEVDRNETLSAIDRCDGLPLALVSIAEFMKRNVAEINTVSAKENVIAKICEEALQACRDCDDRCRDDRSAKGCDDGCCSDNNPLARMQRVLFDNYHSLHNDAIIQSCLLYFSMFPRGHPVKRNSLIRRWVAEELIQDGISSTDPVDVAAKNLSVLIDRNVIQPIDENVKRCQPPGMMLEYISHKSMCEGFMRVLHCHQQPRTDEYIRRLSLHNYNGKNIAERDGSTLFSRLRTLAVFPAKLKDAVTVGLGVKFADYKLLRVLDLEQCNGLDNSHLQEICDTPLLLLRYLSLGGSITAVPRKIARLKRLQTLDLRGSNANTVEAPIEAILLPELKHLLGGLKKKLSKTELETLAGFVIGKSRGVSRLLFHMSMLRKIKIQCKPTADKANLTHVSKAIEKFIRNVHNTPGHRSLSIDLVGGCKTEFLDFLRAAPGTLNSLKLQGKLKEFPRFIVDLTGLTELCFWLTNLRGQDIISGTLKEVALQKVVDKRKVITRWKEAAKRHPNRPNILEIEDP |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0022600 | OsLiXu_11g0022600.01 | Chr11 | 29886274 | 29889895 | - | NAM | ||
| CDS seq | atggaagccagcctcggtcccataatcgccggattagcgagcagagttctgccggaattcgtttcgtggttacggaaggaagggaagaagttcgagggccttcagcgtgatgttgactccatccgagatgagctcgagttaatagatgctgccattctagatcatcgctccaatagcggcagcaactcccagaaagtttggatttcacaagtgagacgcctggcaaatgacatcgaagactggatcgaccagttccgggtcgcggagacaaaggaagcccgtcaagagctctccggacagattcttggcttgaagcaaagatgtgagaaaataggcaaagagcctccggctccggcgacctccaataatccaccagctactggtcagaagatggtggcgatggagggcgatctctaccaccacaagcttcctccccttccagcgtcccgtcacaagatggtggggatgaagggggctctcgaagagctccgggagctggtggtgcggcgatccgaccgccaatcggagaggaagctcagggtgatctgtatcgtgggctttggtggcataggtaagactttcctagctgacaaagtttacactagcgtgagcaaggagtacttccctcgccatgcttgggttaacgcctcgggcaagagggcaggcgaggttctcaaggagatactcgaggaattaggcaagcaagtcgacaagagcaagggcaagggcaagggcgtagatggtgccagttcatccaacaatatcccagagattgatctccatggcgcgagtacctctaaacgcatcaggaaggtgggtgttcatgttgggagcagctccaacgaaggcccaaaagtcaacaatgcctcctctgaaacaccactagccgaaaatgtctatctcaaatcatgcctagggaccaacaggtacttgattgtaatcgatgacgtgcagaggagggaagtactgcacggtataatacgtgagttccctgcagacatggaagacagcagaattatcgtgacaacaagtgttcagtcagtagcatatgacatcaactctgatagccgtcacatgtacaaagtcaaaacacttagttgtgacgacccaaaagagttgttcttccaagtagcctccatggagaaatatccagaagtggatagaaatgagacattatcagccatcgacagatgtgacggtctaccacttgctctggttagcatagctgaattcatgaagaggaatgtggcagagatcaatactgtatcggcgaaagagaacgtgatagccaagatttgtgaagaagcgttacaggcctgccgcgattgcgatgatcgctgcagggacgaccgatcagcgaaagggtgtgacgacggctgctgcagcgacaacaacccattagcaaggatgcaacgggtgctattcgataactaccacagcctgcataacgatgccatcatccagtcctgtttgctctacttctccatgttcccacgcggtcaccccgtgaagaggaattccctgataaggcgttgggtggcggaagagctcatacaggacgggataagcagcactgatcccgtcgatgttgctgccaagaatctcagcgtcctcatcgacaggaatgtcattcagcccatagatgaaaacgtgaagagatgccaaccccctgggatgatgctggaatacatctcgcacaagtccatgtgcgaaggcttcatgagggttttgcattgtcaccaacaaccgcgcaccgacgagtacatccgccggctttcgctccataattacaacggcaagaacattgccgaaagagacggcagcaccctgttcagtcgcctccggactctggcggtgttccctgccaaactgaaagatgcagttaccgtgggactcggtgtgaagttcgcggattataagctgctgcgggtgttggatctggagcagtgcaatggcctggacaacagtcacctccaagaaatatgcgacacgccgctgctgctgctgagatacctgagcctcgggggcagtatcactgcggttccaaggaaaatagcgaggctgaaacgattacagacactggacttgaggggaagcaacgccaatacggtcgaggcgcccattgaagccatcttgctaccggagctaaaacacctcctcggagggcttaagaagaagctgtcgaaaacagagctggaaacgctggcaggattcgtcatcggtaagagcagaggggtatcacggctcttgtttcatatgagtatgttgaggaagattaagatacagtgcaaacccactgcagacaaagcaaacttgactcatgtttcaaaagccatcgagaaattcatccgtaatgtgcacaacacgcctggtcatcgctccctatcgatcgatttggtaggaggctgcaaaacagagttcctggattttctacgagcagctccaggtacactcaactccctgaaactgcagggtaagctcaaggaattccctcgatttatcgtcgatctgactggtctcacggagctgtgcttttggttgactaatctgaggggacaagacatcatttccggcacgctcaaggaagtcgctctccaaaaagtagtcgacaagagaaaagtaataactcgttggaaagaagcagcaaagcgtcatcctaacaggcccaacattttagaaattgaagacccctga
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| Protein seq | MEASLGPIIAGLASRVLPEFVSWLRKEGKKFEGLQRDVDSIRDELELIDAAILDHRSNSGSNSQKVWISQVRRLANDIEDWIDQFRVAETKEARQELSGQILGLKQRCEKIGKEPPAPATSNNPPATGQKMVAMEGDLYHHKLPPLPASRHKMVGMKGALEELRELVVRRSDRQSERKLRVICIVGFGGIGKTFLADKVYTSVSKEYFPRHAWVNASGKRAGEVLKEILEELGKQVDKSKGKGKGVDGASSSNNIPEIDLHGASTSKRIRKVGVHVGSSSNEGPKVNNASSETPLAENVYLKSCLGTNRYLIVIDDVQRREVLHGIIREFPADMEDSRIIVTTSVQSVAYDINSDSRHMYKVKTLSCDDPKELFFQVASMEKYPEVDRNETLSAIDRCDGLPLALVSIAEFMKRNVAEINTVSAKENVIAKICEEALQACRDCDDRCRDDRSAKGCDDGCCSDNNPLARMQRVLFDNYHSLHNDAIIQSCLLYFSMFPRGHPVKRNSLIRRWVAEELIQDGISSTDPVDVAAKNLSVLIDRNVIQPIDENVKRCQPPGMMLEYISHKSMCEGFMRVLHCHQQPRTDEYIRRLSLHNYNGKNIAERDGSTLFSRLRTLAVFPAKLKDAVTVGLGVKFADYKLLRVLDLEQCNGLDNSHLQEICDTPLLLLRYLSLGGSITAVPRKIARLKRLQTLDLRGSNANTVEAPIEAILLPELKHLLGGLKKKLSKTELETLAGFVIGKSRGVSRLLFHMSMLRKIKIQCKPTADKANLTHVSKAIEKFIRNVHNTPGHRSLSIDLVGGCKTEFLDFLRAAPGTLNSLKLQGKLKEFPRFIVDLTGLTELCFWLTNLRGQDIISGTLKEVALQKVVDKRKVITRWKEAAKRHPNRPNILEIEDP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.482263 | 0.0 | 0.170905 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0462500 | SBH | 0.000000 | 0.629594 | 0.282822 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45790 | SBH | 0.676354 | 0.199432 | 0.212752 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0462500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023040 | RBH | 0.094114 | 2.121328 | 0.989674 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007840 | SBH | 0.993562 | 7.435786 | 2.405322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007740 | SBH | 0.194044 | 0.375342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007760 | SBH | 6.714519 | 2.015030 | 7.583820 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0401000 | RBH | 2.4382875 | 2.674932 | 0.017246 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024460 | SBH | 0.000000 | 0.055119 | 0.105740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0413300 | SBH | 0.2562135 | 0.6930745 | 2.0474715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023150 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023970 | RBH | 0.307051 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007890 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022850 | RBH | 0.429413 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023280 | RBH | 1.201399 | 0.000000 | 0.0 |
