Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0022120 | OGI:11074920 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:29429614-29431665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgagctggcggatacccacggagccgtgacctccttactgagtcgcgcctacggtgcccttgccggggaggtgaagctgttgcgcggcgtccggcgagacgtggagttcatcaaggacgaaatggagagcatgaacgcgttcctcctcaagatcgcggaaagcggcgtggacgacggccaccaggtcctggcctggatgacccaggtgaaggaggtggccgacagctcggatcgctgcgtccacaagtacatggactgtctcgacggcggcggccatggcggctgctgtggctgtactggttcattgctcggacccgccacaggatcgccacccgtatccacgacctcaaggcccgggcacgagaggtggccgagcggcaggggaggtacggcgtcaccgctctgccgccgccgccgccggccatcatcagcagccagatgaacaagcatcgcttggatgatcagcagcagcagccagacctcgagaggcggcggatgatcgacgaaaggggaaatcaccctaaacgaaaaggaagatgaagaacaagcgaagcagatcgaggttatctccatcctagggccacgcggtacgggcaagactagacttgcacggaaggtgtacgacatgtaccgcaacaagtctcctagcgccgccacgaacacgccccccgacgcagagaggcactggaggccatggttgcaaccatcgcacctgatatttccaagactgcttcaaacttcagcagctgggaagacactgcaatcttggagacgattagaggccgcctgggacttgcagaagactactgcttgaagagagctgtctccctgcttgccacgaagactactgctgctgccgccaacgccgaagaagacgatcggaggcgggaggtcttaaggtcgtcgatggtagaatcttcctttcctcaagacgaagacgatgtacacgcgggcttgttcccctacaaggccggccgaattactgtccaaaactatctactcgagcaactgatgatgcaagcatcaggcggcggagaccgtcgcttacaatgcatagcgaattacttgaaatcattgcgcaggtcatctatagtgcgtctactgaatgtgcttgatctagaaggctgcaccggctttgaagaagagacggacctcaggaccatttgcaccgaggccactcacctcaagtatttgagcctccggaacacgggcgtcacccagctgcccaagcacatacaaaatctccagcaacttgagacgctggacgtccggggaaccaatgtgagcaagttggacgtggtgctcccgatgctgaaggagctgcattctggccaatcgtaccgctcccgccgtcgccgtgagcggtatggaggatgacgaacatggaggtgatgtcctatgttgacgtctcgcatagagctgacgaggtgatgtgcatcggtcggatgctaaagctgaccaagctgggaatagttgtgaccgggaaagaagcctcttacctgatgaagtatgtggggagagcagcagctacaatctcgcggattcatacatgctgtcacctcccaggctgcttcaaaccctcagcatcagcggacttcatcagcttgtcaagatcaccctgcgcgagacttacctgacaggggacgctctttacgtcctgggcaacctacgtagccttcggtgtctcagattcctgcccaaagcattagcagaagggatcatcaaattcagcgccggcgaattcagcaatctcgtccatcttttcttccaagaagactacatcatctcagtcatatttgatcacgaaactgctcctaggctggagacagttgttttcgacgtcaagataataacttccctccatggcatccgcaacctcccaagcctgaaagatctccagattaaaggcgaactgagaggagagcaagccgtccaacaagcaattgcagatcatccaaacagttctgattacgagagcaaaatccaaggaaaggataggtacaggtactcaccaggccttttcgtcctttgctgcatctgctgctga
More
|
||||||||||
| CDS seq | atggacgagctggcggatacccacggagccgtgacctccttactgagtcgcgcctacggtgcccttgccggggaggtgaagctgttgcgcggcgtccggcgagacgtggagttcatcaaggacgaaatggagagcatgaacgcgttcctcctcaagatcgcggaaagcggcgtggacgacggccaccaggtcctggcctggatgacccaggtgaaggaggtggccgacagctcggatcgctgcgtccacaagatcgccacccgtatccacgacctcaaggcccgggcacgagaggtggccgagcggcaggggagcagctgggaagacactgcaatcttggagacgattagaggccgcctgggacttgcagaagactactgcttgaagagagctgtctccctgcttgccacgaagactactgctgctgccgccaacgccgaagaagacgatcggaggcgggaggtcttaaggtcgtcgatggtagaatcttcctttcctcaagacgaagacgatgtacacgcgggcttgttcccctacaaggccggccgaattactgtccaaaactatctactcgagcaactgatgatgcaagcatcaggcggcggagaccgtcgcttacaatgcatagcgaattacttgaaatcattgcgcaggtcatctatagtgcgtctactgaatgtgcttgatctagaaggctgcaccggctttgaagaagagacggacctcaggaccatttgcaccgaggccactcacctcaagtatttgagcctccggaacacgggcgtcacccagctgcccaagcacatacaaaatctccagcaacttgagacgctggacgtccggggaaccaatgtgagcaagttggacgtggtgctcccgatgctgaaggagctgcattctggccaatcgtaccgctcccgccgtcgccgtgagcgagctgacgaggtgatgtgcatcggtcggatgctaaagctgaccaagctgggaatagttgtgaccgggaaagaagcctcttacctgatgaagctgcttcaaaccctcagcatcagcggacttcatcagcttgtcaagatcaccctgcgcgagacttacctgacaggggacgctctttacgtcctgggcaacctacgtagccttcggtgtctcagattcctgcccaaagcattagcagaagggatcatcaaattcagcgccggcgaattcagcaatctcgtccatcttttcttccaagaagactacatcatctcagtcatatttgatcacgaaactgctcctaggctggagacagttgttttcgacgtcaagataataacttccctccatggcatccgcaacctcccaagcctgaaagatctccagattaaaggcgaactgagaggagagcaagccgtccaacaagcaattgcagatcatccaaacagttctgattacgagagcaaaatccaaggaaaggataggtacaggtactcaccaggccttttcgtcctttgctgcatctgctgctga
More
|
||||||||||
| Protein seq | MDELADTHGAVTSLLSRAYGALAGEVKLLRGVRRDVEFIKDEMESMNAFLLKIAESGVDDGHQVLAWMTQVKEVADSSDRCVHKIATRIHDLKARAREVAERQGSSWEDTAILETIRGRLGLAEDYCLKRAVSLLATKTTAAAANAEEDDRRREVLRSSMVESSFPQDEDDVHAGLFPYKAGRITVQNYLLEQLMMQASGGGDRRLQCIANYLKSLRRSSIVRLLNVLDLEGCTGFEEETDLRTICTEATHLKYLSLRNTGVTQLPKHIQNLQQLETLDVRGTNVSKLDVVLPMLKELHSGQSYRSRRRRERADEVMCIGRMLKLTKLGIVVTGKEASYLMKLLQTLSISGLHQLVKITLRETYLTGDALYVLGNLRSLRCLRFLPKALAEGIIKFSAGEFSNLVHLFFQEDYIISVIFDHETAPRLETVVFDVKIITSLHGIRNLPSLKDLQIKGELRGEQAVQQAIADHPNSSDYESKIQGKDRYRYSPGLFVLCCICC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0022120 | OsLiXu_11g0022120.01 | Chr11 | 29429614 | 29431665 | + | NAM | ||
| CDS seq | atggacgagctggcggatacccacggagccgtgacctccttactgagtcgcgcctacggtgcccttgccggggaggtgaagctgttgcgcggcgtccggcgagacgtggagttcatcaaggacgaaatggagagcatgaacgcgttcctcctcaagatcgcggaaagcggcgtggacgacggccaccaggtcctggcctggatgacccaggtgaaggaggtggccgacagctcggatcgctgcgtccacaagatcgccacccgtatccacgacctcaaggcccgggcacgagaggtggccgagcggcaggggagcagctgggaagacactgcaatcttggagacgattagaggccgcctgggacttgcagaagactactgcttgaagagagctgtctccctgcttgccacgaagactactgctgctgccgccaacgccgaagaagacgatcggaggcgggaggtcttaaggtcgtcgatggtagaatcttcctttcctcaagacgaagacgatgtacacgcgggcttgttcccctacaaggccggccgaattactgtccaaaactatctactcgagcaactgatgatgcaagcatcaggcggcggagaccgtcgcttacaatgcatagcgaattacttgaaatcattgcgcaggtcatctatagtgcgtctactgaatgtgcttgatctagaaggctgcaccggctttgaagaagagacggacctcaggaccatttgcaccgaggccactcacctcaagtatttgagcctccggaacacgggcgtcacccagctgcccaagcacatacaaaatctccagcaacttgagacgctggacgtccggggaaccaatgtgagcaagttggacgtggtgctcccgatgctgaaggagctgcattctggccaatcgtaccgctcccgccgtcgccgtgagcgagctgacgaggtgatgtgcatcggtcggatgctaaagctgaccaagctgggaatagttgtgaccgggaaagaagcctcttacctgatgaagctgcttcaaaccctcagcatcagcggacttcatcagcttgtcaagatcaccctgcgcgagacttacctgacaggggacgctctttacgtcctgggcaacctacgtagccttcggtgtctcagattcctgcccaaagcattagcagaagggatcatcaaattcagcgccggcgaattcagcaatctcgtccatcttttcttccaagaagactacatcatctcagtcatatttgatcacgaaactgctcctaggctggagacagttgttttcgacgtcaagataataacttccctccatggcatccgcaacctcccaagcctgaaagatctccagattaaaggcgaactgagaggagagcaagccgtccaacaagcaattgcagatcatccaaacagttctgattacgagagcaaaatccaaggaaaggataggtacaggtactcaccaggccttttcgtcctttgctgcatctgctgctga
More
|
|||||||
| Protein seq | MDELADTHGAVTSLLSRAYGALAGEVKLLRGVRRDVEFIKDEMESMNAFLLKIAESGVDDGHQVLAWMTQVKEVADSSDRCVHKIATRIHDLKARAREVAERQGSSWEDTAILETIRGRLGLAEDYCLKRAVSLLATKTTAAAANAEEDDRRREVLRSSMVESSFPQDEDDVHAGLFPYKAGRITVQNYLLEQLMMQASGGGDRRLQCIANYLKSLRRSSIVRLLNVLDLEGCTGFEEETDLRTICTEATHLKYLSLRNTGVTQLPKHIQNLQQLETLDVRGTNVSKLDVVLPMLKELHSGQSYRSRRRRERADEVMCIGRMLKLTKLGIVVTGKEASYLMKLLQTLSISGLHQLVKITLRETYLTGDALYVLGNLRSLRCLRFLPKALAEGIIKFSAGEFSNLVHLFFQEDYIISVIFDHETAPRLETVVFDVKIITSLHGIRNLPSLKDLQIKGELRGEQAVQQAIADHPNSSDYESKIQGKDRYRYSPGLFVLCCICC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0655700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43770 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0687900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022450 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022340 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0392800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0415700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022940 | RBH | 0.0 | 0.0 | 0.0 |
