Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0017190 | OGI:11033090 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:24030893-24035437 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattgtctttaatttgtcgaagacggtccaccacatattctggtagtattgcctcgttatcacgcagagtcaaaaggtggatcaaaaattgcctccggaggtagtacgggtcctgcgaaagttagagtattttctttatagctttatgaggacatatttatggtggagtgcggtgtgtgcggatatgaaagcattatgtacctctgtaatagggttcagaagacgacgaccatcgtagttcaccataaagttgaatacgtaaaagccacagtcatccctgtatgtttttgagaaagtagtgtcagtacaagctttgggttggttgtatttcgtttgttttaggagtcactcacccgttctgctgctctggtatattttcaactgtctcaaagtcccaattaagtatgtccatgttccaccctggagatgcaagacgcatgcattccattacacactgtgacaccatgatctttatcttgtcatgcctggtgaaacgtgattcccctagtggatcttctgtgtttagtgaatcaagcaccgataacttcttgctctccatgttaaatacgtacagcacgtaatgattgaataggtgaacaggaatcagtatctgcaaagtttaggtttttcagtgggactacttctgtactattgtttacaagagtttctacaatctacgaactgcaaatttgtactcaccaggtggctttctgaaacatcatatactacctctgtgcccgagaagtgtgcaagttgatggctagcttcccaaaattcctcaccagctagcgcgtacatctgacaatacagaaagaatcattgaatttatatttttattgatgaaagaaatatattgtttattgcatgcaatgttaccccaaaatcttggttaatgaaatgcctccaaccaaggtagtttgtgttgtgaaatctctcaacttcttgttggaacattattcgaattgcaaggttgagagaatctgaatccatttggctcccaatctttatagtttcttggatgtttcgtagcgtcaatgatattctgaaaggatgggagctctgcagccatgtttttctgaaataaaccatggataaaaatgaatgtcagatttggtggggtgagatgcttaattattctggaagaagaatgatacttactctaatgatgcatcgtcagaaatagacattatataggaatacaggtcgtcagcaatcctggattccagcctctgcgttgagcattgctttgacatgaaatgtgacatgagcttcctgtttggtttgactacacgctttgacttgtgcttcagcaagtgagatggtgggttttcaacggtgtatttgcgcttcttctgcccgtcgctaccgaattcttcaattagcataatggaacattggttagtcatgcgagttcccgacgtaggcgatactgaagaatttagcctttttttcgaatctgacaacattcgcatgatcaggagtaaacacattgttggttggaatttttaatcttttggtacaccaacctggagctccattagattttggagtacactgcaagcctccaattttgtgatcatattgttgggtatctgatacatgaagagcgtccgaaaatttgttagagtgtcaagtagtacgagttttatttttaaaatggtgtatgtactcaacgttacctgttggttgatccaattgactagcatcttttgtagcatgtgtggagtagtttgtgggtgtgtggtatcccatggcagttgtgtctccccatggatggagaggcccttgtatatcctcaatggtatcaataactttcgttactgctgcccttatcgctatcttaactgccgctgtaatattagtcttgaaagctctcttgaataggttagatgcgtgaatagcagtttgcatggtgcttatgtcgacgaaatctgatatggtaggcaaaatctcatcgatgcggtcgaatccatcctgaacataagatttcaactcctcgtatgcctgttttatgttatcatatataccacatgttagtttaaaatcccttgatcatgtgaaaattacaacttaatgaagaaacaatcaagtaacatagcatacggatggttgacatacctgtgacccgacagttccacgtacgtctaacgaagagaagtgtgattccaggaattttattaaatttttaccgccatcaatggctctagatgggatcttcgaaccggagcataagtttaggggagatagctctggcacatgggggttgttttctcttggttccttcatcaactaaacagcatgtatatcggaaattagctaaattttgcagccagaaataggcatattacagccagggtatcatacatacctggagttttccataacgagggaaggggaatcctgggttatgtttactaactacatcttgttgaatcatcctagcaatttgatcatcctcaaactgagaaatgtgacatgttttaacacatgtgatcccaaccttccggaactggagatttctcaaatattttacctgcaaaaatgattcacaatgacaatatgtgtgttgattgtatgctgcattaacaagtcagttttaaatgctaaccattagaaagatgatacacccgttaatggatagttgagccttattcggaaagcaggtgggcattgattctgctgctttcttcacctcatctacaacgaattgggaccagttgtactgttttatattgtcaacatcagaaacagccataatatacctaggagatatgaagtttgcgcaggattgcggtgccaaaagcttcgttgtgacataaagcacaaaagccgccatgaaaaccctcttttcatctattgtcatgggataaccatactgcttctttaggattctctctaagagtgatattttcaggtgtgaaaagtttggtatctcaaatatttcacacaatatttgtttcttcccatccaattcatcttgagagcaagggataataggttgacctgagcatggcaagccaaaaactgcattcacatcattaggaccgaatggcaactcctggttgacatctttaacaatagcgcatgatttcggatcaactttgctcagtagccatgcaccaaactgcctgtttaccttagtaagcttgatatccaaaagtccatcaaacccaacttcaccaatcaactccttcttcctatcatcgaattctttaatgatattcactacgcatttgggctgacacctgcagttgataccaaaggtagtattgtctttcttctgtctatttaaaactctgctttgccgatacctggataccacccgtgcagcagtcttatttaggctgccccttgtgccagaaaccttcaaagcctgcagataattagtttttcatttcataaatagacaatattacatggaccagtgtatttaaaaattcaacatatacttctattttttttaaaaaaaagcatacactcatatatgtatggaaagatgaagtacaaaatactgcgtagcaaattctacctatgtgtaccctcttaattAaaaaaaaaatcatgtgcactgaaagaaaagtcagtatatgcaaagtttagagaatattactgtatgtAaaaaatcagcatatacctctctatgtaaaagtgcagtatatacttcttcgtaacaaggtccagtatgtaaaccactatggaaaagcctatgtatatatgtggaaaaatgcagtatatgctatcttctagaaaagttcagtatgtaccacatacaaaattcagtacatactatatgctgtcgtataacaaagctcagtacaaagcctcccatagaaaaattcagtatatctgtgaaaaattcagtaaatactggtgcgtatcaaagttcagtctatgaatcactgtggaaagattcagtatagatgtggaaaatgcagtatatgctatcgtccaacaaagtagagaataaagctccccacataaaaattcagtatatactattgcctaacagagagttcagtaagaaccctgccacaccaaaaatcaatacttaataccgtctagcagactccaaaaagtttccctccaaagaaaaaatgagtatataccgttgaaaattcagtacgtactaccatctacatttttctttataggggtgggggctaaaacagcattaacttcatccacccaaaaaaccatcatatgcactaaaaggggaaaaattagcatctgaaactgagagagtacatgaaccgaactacacctaatccctctctacaggcatacatgtattcaatttcaggtggcataccttggactgtggtgacaaactaattttcctgtgaccctgcggcaaagaagaaaattttaggcaacgtgtcttgatcttgccgtacaaaaataaacgaatactaacctgctgctttggatgaaatccactgctatggcccattgattttgccattgttgccccgctcctgcattcagccgactctagatcgattacttctgcttcaggaacacatgctgttgagagaggatccat
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| CDS seq | atggatcctctctcaacagcatgtgttcctgaagcagaagtaatcgatctagagtcggctgaatgcaggagcggggcaacaatggcaaaatcaatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgtcaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgagcaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcaggtcaacctattatcccttgctctcaagatgaattggatgggaagaaacaaatattgtgtgaaatatttgagataccaaacttttcacacctgaaaatatcactcttagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcggcttttgtgctttatgtcacaacgaagcttttggcaccgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctgatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagcagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtgtatcatctttctaatggtaaaatatttgagaaatctccagttccggaaggttgggatcacatgtgttaaaacatgtcacatttctcagtttgaggatgatcaaattgctaggatgattcaacaagatgtagttagtaaacataacccaggattccccttccctcgttatggaaaactccagttgatgaaggaaccaagagaaaacaacccccatgtgccagagctatctcccctaaacttatgctccggttcgaagatcccatctagagccattgatggcggtaaaaatttaataaaattcctggaatcacacttctcttcgttagacgtacgtggaactgtcgggtcacaggcatacgaggagttgaaatcttatgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggcagttaagatagcgataagggcagcagtaacgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacaccgttgaaaacccaccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacatttcatgtcaaagcaatgctcaacgcagaggctggaatccaggattgctgacgacctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcatttcattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcacagaggtagtatatgatgtttcagaaagccacctgatactgattcctgttcacctattcaatcattacgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactaggggaatcacgtttcaccaggcatgacaagataaagatcatggtgtcacagtgtgtaatggaatgcatgcgtcttgcatctccagggtggaacatggacatacttaattgggactttgagacagttgaaaatataccagagcagcagaacggggatgactgtggcttttacgtattcaactttatggtgaactacgatggtcgtcgtcttctgaaccctattacagaggacccgtactacctccggaggcaatttttgatccaccttttgactctgcgtgataacgaggcaatactaccagaatatgtggtggaccgtcttcgacaaattaaagacaattag
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| Protein seq | MDPLSTACVPEAEVIDLESAECRSGATMAKSMGHSSGFHPKQQGHRKISLSPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPMTIDEKRVFMAAFVLYVTTKLLAPQSCANFISPRYIMAVSDVDNIKQYNWSQFVVDEVKKAAESMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSPLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAAVKIAIRAAVTKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSHFMSKQCSTQRLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGTEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0017190 | OsLiXu_11g0017190.01 | Chr11 | 24030893 | 24035437 | - | NAM | ||
| CDS seq | atggatcctctctcaacagcatgtgttcctgaagcagaagtaatcgatctagagtcggctgaatgcaggagcggggcaacaatggcaaaatcaatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgtcaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgagcaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcaggtcaacctattatcccttgctctcaagatgaattggatgggaagaaacaaatattgtgtgaaatatttgagataccaaacttttcacacctgaaaatatcactcttagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcggcttttgtgctttatgtcacaacgaagcttttggcaccgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctgatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagcagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtgtatcatctttctaatggtaaaatatttgagaaatctccagttccggaaggttgggatcacatgtgttaaaacatgtcacatttctcagtttgaggatgatcaaattgctaggatgattcaacaagatgtagttagtaaacataacccaggattccccttccctcgttatggaaaactccagttgatgaaggaaccaagagaaaacaacccccatgtgccagagctatctcccctaaacttatgctccggttcgaagatcccatctagagccattgatggcggtaaaaatttaataaaattcctggaatcacacttctcttcgttagacgtacgtggaactgtcgggtcacaggcatacgaggagttgaaatcttatgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggcagttaagatagcgataagggcagcagtaacgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacaccgttgaaaacccaccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacatttcatgtcaaagcaatgctcaacgcagaggctggaatccaggattgctgacgacctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcatttcattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcacagaggtagtatatgatgtttcagaaagccacctgatactgattcctgttcacctattcaatcattacgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactaggggaatcacgtttcaccaggcatgacaagataaagatcatggtgtcacagtgtgtaatggaatgcatgcgtcttgcatctccagggtggaacatggacatacttaattgggactttgagacagttgaaaatataccagagcagcagaacggggatgactgtggcttttacgtattcaactttatggtgaactacgatggtcgtcgtcttctgaaccctattacagaggacccgtactacctccggaggcaatttttgatccaccttttgactctgcgtgataacgaggcaatactaccagaatatgtggtggaccgtcttcgacaaattaaagacaattag
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| Protein seq | MDPLSTACVPEAEVIDLESAECRSGATMAKSMGHSSGFHPKQQGHRKISLSPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPMTIDEKRVFMAAFVLYVTTKLLAPQSCANFISPRYIMAVSDVDNIKQYNWSQFVVDEVKKAAESMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSPLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAAVKIAIRAAVTKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSHFMSKQCSTQRLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGTEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.085069 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0307600 | RBH | 1.108489 | 0.972281 | 4.343823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35550 | SBH | 0.0 | 0.0 | 0.052764 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0307600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011350 | RBH | 0.0 | 0.0 | 1.110919 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011110 | RBH | 0.000000 | 0.053524 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011280 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0337300 | SBH | 0.0233125 | 0.011517 | 0.031032 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0011620 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010640 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011270 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017310 | RBH | 0.000000 | 0.609391 | 0.110550 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011080 | SBH | 0.0 | 0.0 | 0.0 |
