Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0017130 | OGI:11061890 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:23888842-23891864 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatattgatgcctcttgagtcctatcctctccaagtagtgtgtaccaccactggataccgcaattaattctagagcattggcgcaacgcagcgaggaattgccgggtgatctctgcgaagcccaaagatttgagagttgacatgaggaactcgatgccaagcgggacctccatcatgctactgaggttgactagatatagttgctgcaggcttgccatggaaccttgctgaatctccaaccgtttcaggcgaggcatgtctcctatgtatagctccttgagggcaggaaaccacccatggtggaagacgagctcatctccaatgtacgctctgttcaacaaaaggtccgtcagattcgaccaccgagacagagatggcagtgggtcatctaccagctgggaccaagatagatgtatcgaatacaagtggttctgaccccctgctgcacccaacagcatgtttgcttgtgccaatctcccgcgcaatcttagcttttcaaggtttggaggcagtgggttcaaactactcaaattgaggatatcattctcatcacttgctgcaatgcttaagtaggatagaaattccatgtgacgcaatgacgcgcagaggcattcgcagcagcttcccttcacgtcccatatctttatgcttctcatctgcctcagctcccccaaccagctcaaaggctcatcctgagcttgcagtgcttgcaatgtctgtagctctctcagattctctagtcccctggggatgcatacaccagtgcgacactggagttgtcgcccagaccgatcgttcgctttctcagcaaacaagtgcctaagcttttttagcttaatgatccctcttggcagctcatgtatttccgatgtacagaggtccagtgttagcaagttggagagcttctcgatagaatttgggaggagcttcacattggaatcccgcaggccaagatgtcggaggttgaatagatcacctatggcatctggaacattgtcgatgggtagcccgcttaactcaagtactgacatatatctacacttctcggatagcagaggtagcagagtggatgatggcatggctttatccaatgcgatgaaagatcgaaggcggcattcacttgaaattacttgattaatatccttgtctaatctgtgtattaccatccatcgttcatcattctcctcaagaaactcgaaacgcttattctcacaactgtatgaaacaccaaaacattctctccggcacaaatcaactgccaactcgtgtacgatatcatgcattctgaatgcttttatcctgccaaatgagttcctttcaacaagctgtagcatgttcatgtgaaccaattccttgagatacccttctgccacttcctccattgtgcttccacccctcttctctacaaacccttctgctatccaccaccttacaagcttctttcttgtaaaaagatagtcgtctggaaacaagctgcaatagaggaagcaactttttagttgtgttggaaggtagatgtagctcaggtaaaggatattcctaacatgttccatgctcgggttgttgatgacctcccagtcaagttggttatgtatgcgcctgaattcctcttcagtcttgtcacgcacaaagaggagtctgccgacagagacaattgcaagaggtacacctttgcacttgcttgctatttgatatgctagctgtgttacttctgtggggcactcaagtttcttctctcttggaaaagccgccttatagaagagttcccatgagtcgttttgtgatagaggttctagcctaatcctcttgtttgggaaagcaaggtgagttacctcatcaatgcgtgttgtgacaagtactctactccccctgagattagaaacaagtgctccgaacaagttactgatggcttctggtgcccaaacatcatctaatatgaccaaatacttccggtcccttaggaatgccttcaattcatcttgaaggccttcagctttcatgtccccaaggtttaccggaggattttgtttggcatttctgaaaagttcagtgatcagacatttcagaatgttcttcatggaatatgtttgagagatggagacccaggcatggcattcaaacttctctctctcgttcctatacacatttgctgccaaggttgttttgccgagacctcccatcccatgcagcactatcacctcacgttccaattcatcacctgccagccactcgcggagtctttttctgttttcatccacccctacaagatcttcttcactgagggagcatgaaatgctagctagatgacgtgacgcctcaacaatgtaacatgagctttcaccactagtctcatcggcaaccatccgaacccatcgctcttttgcttgaaacaggtgcactagattggcctctgcttccttaacagacggagctatcctgtttaaagagagcagagcatttggtcccttcattctcttgaatcctttctttagataggtagtccatacagtgtcatcatgtttgtccttgtggctaacaagatgcaagtagtcatccacgatgtcctcgatctgatgtgctaacattctcacatcctccacccagatttcatatatcttgttgttgcgattgcggatatccattcgggacagaaactcgtgcatcagcctgagctccctcttgatgcgccccatgctaccttgaagctctgtcagttgtgtgacgtacttctgaaaatatgaagtggcttggttgattgcctcattccctagggcaacaccaatcttcttcacaattagaagaatcacagcctcagacattaggttcttgtcgagtctgattgcacacctgaccagggtggcctgagtatatctctctaccacaaaacctagaaaggaagaagaaaggtaaaatacaataagctgtattgatatgttatatctaaaaaggaaggaaaaaaagatgtagaacatgataagtaccatattgacaggttacatataacaattgggaacttcgccat
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| CDS seq | atgtctgaggctgtgattcttctaattgtgaagaagattggtgttgccctagggaatgaggcaatcaaccaagccacttcatattttcagaagtacgtcacacaactgacagagcttcaaggtagcatggggcgcatcaagagggagctcaggctgatgcacgagtttctgtcccgaatggatatccgcaatcgcaacaacaagatatatgaaatctgggtggaggatgtgagaatgttagcacatcagatcgaggacatcgtggatgactacttgcatcttgttagccacaaggacaaacatgatgacactgtatggactacctatctaaagaaaggattcaagagaatgaagggaccaaatgctctgctctctttaaacaggatagctccgtctgttaaggaagcagaggccaatctagtgcacctgtttcaagcaaaagagcgatgggttcggatggttgccgatgagactagtggtgaaagctcatgttacattgttgaggcgtcacgtcatctagctagcatttcatgctccctcagtgaagaagatcttgtaggggtggatgaaaacagaaaaagactccgcgagtggctggcaggtgatgaattggaacgtgaggtgatagtgctgcatgggatgggaggtctcggcaaaacaaccttggcagcaaatgtgtataggaacgagagagagaagtttgaatgccatgcctgggtctccatctctcaaacatattccatgaagaacattctgaaatgtctgatcactgaacttttcagaaatgccaaacaaaatcctccggtaaaccttggggacatgaaagctgaaggccttcaagatgaattgaaggcattcctaagggaccggaagtatttggtcatattagatgatgtttgggcaccagaagccatcagtaacttgttcggagcacttgtttctaatctcagggggagtagagtacttgtcacaacacgcattgatgaggtaactcaccttgctttcccaaacaagaggattaggctagaacctctatcacaaaacgactcatgggaactcttctataaggcggcttttccaagagagaagaaacttgagtgccccacagaagtaacacagctagcatatcaaatagcaagcaagtgcaaaggtgtacctcttgcaattgtctctgtcggcagactcctctttgtgcgtgacaagactgaagaggaattcaggcgcatacataaccaacttgactgggaggtcatcaacaacccgagcatggaacatgttaggaatatcctttacctgagctacatctaccttccaacacaactaaaaagttgcttcctctattgcagcttgtttccagacgactatctttttacaagaaagaagcttgtaaggtggtggatagcagaagggtttgtagagaagaggggtggaagcacaatggaggaagtggcagaagggtatctcaaggaattggttcacatgaacatgctacagcttgttgaaaggaactcatttggcaggataaaagcattcagaatgcatgatatcgtacacgagttggcagttgatttgtgccggagagaatgttttggtgtttcatacagttgtgagaataagcgtttcgagtttcttgaggagaatgatgaacgatggatggtaatacacagattagacaaggatattaatcaagtaatttcaagtgaatgccgccttcgatctttcatcgcattggataaagccatgccatcatccactctgctacctctgctatccgagaagtgtagatatatgtcagtacttgagttaagcgggctacccatcgacaatgttccagatgccataggtgatctattcaacctccgacatcttggcctgcgggattccaatgtgaagctcctcccaaattctatcgagaagctctccaacttgctaacactggacctctgtacatcggaaatacatgagctgccaagagggatcattaagctaaaaaagcttaggcacttgtttgctgagaaagcgaacgatcggtctgggcgacaactccagtgtcgcactggtgtatgcatccccaggggactagagaatctgagagagctacagacattgcaagcactgcaagctcaggatgagcctttgagctggttgggggagctgaggcagatgagaagcataaagatatgggacgtgaagggaagctgctgcgaatgcctctgcgcgtcattgcgtcacatggaatttctatcctacttaagcattgcagcaagtgatgagaatgatatcctcaatttgagtagtttgaacccactgcctccaaaccttgaaaagctaagattgcgcgggagattggcacaagcaaacatgctgttgggtgcagcagggggtcagaaccacttgtattcgatacatctatcttggtcccagctggtagatgacccactgccatctctgtctcggtggtcgaatctgacggaccttttgttgaacagagcgtacattggagatgagctcgtcttccaccatgggtggtttcctgccctcaaggagctatacataggagacatgcctcgcctgaaacggttggagattcagcaaggttccatggcaagcctgcagcaactatatctagtcaacctcagtagcatgatggaggtcccgcttggcatcgagttcctcatgtcaactctcaaatctttgggcttcgcagagatcacccggcaattcctcgctgcgttgcgccaatgctctagaattaattgcggtatccagtggtggtacacactacttggagaggataggactcaagaggcatcaatatag
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| Protein seq | MSEAVILLIVKKIGVALGNEAINQATSYFQKYVTQLTELQGSMGRIKRELRLMHEFLSRMDIRNRNNKIYEIWVEDVRMLAHQIEDIVDDYLHLVSHKDKHDDTVWTTYLKKGFKRMKGPNALLSLNRIAPSVKEAEANLVHLFQAKERWVRMVADETSGESSCYIVEASRHLASISCSLSEEDLVGVDENRKRLREWLAGDELEREVIVLHGMGGLGKTTLAANVYRNEREKFECHAWVSISQTYSMKNILKCLITELFRNAKQNPPVNLGDMKAEGLQDELKAFLRDRKYLVILDDVWAPEAISNLFGALVSNLRGSRVLVTTRIDEVTHLAFPNKRIRLEPLSQNDSWELFYKAAFPREKKLECPTEVTQLAYQIASKCKGVPLAIVSVGRLLFVRDKTEEEFRRIHNQLDWEVINNPSMEHVRNILYLSYIYLPTQLKSCFLYCSLFPDDYLFTRKKLVRWWIAEGFVEKRGGSTMEEVAEGYLKELVHMNMLQLVERNSFGRIKAFRMHDIVHELAVDLCRRECFGVSYSCENKRFEFLEENDERWMVIHRLDKDINQVISSECRLRSFIALDKAMPSSTLLPLLSEKCRYMSVLELSGLPIDNVPDAIGDLFNLRHLGLRDSNVKLLPNSIEKLSNLLTLDLCTSEIHELPRGIIKLKKLRHLFAEKANDRSGRQLQCRTGVCIPRGLENLRELQTLQALQAQDEPLSWLGELRQMRSIKIWDVKGSCCECLCASLRHMEFLSYLSIAASDENDILNLSSLNPLPPNLEKLRLRGRLAQANMLLGAAGGQNHLYSIHLSWSQLVDDPLPSLSRWSNLTDLLLNRAYIGDELVFHHGWFPALKELYIGDMPRLKRLEIQQGSMASLQQLYLVNLSSMMEVPLGIEFLMSTLKSLGFAEITRQFLAALRQCSRINCGIQWWYTLLGEDRTQEASI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0017130 | OsLiXu_11g0017130.01 | Chr11 | 23888842 | 23891864 | - | NAM | ||
| CDS seq | atgtctgaggctgtgattcttctaattgtgaagaagattggtgttgccctagggaatgaggcaatcaaccaagccacttcatattttcagaagtacgtcacacaactgacagagcttcaaggtagcatggggcgcatcaagagggagctcaggctgatgcacgagtttctgtcccgaatggatatccgcaatcgcaacaacaagatatatgaaatctgggtggaggatgtgagaatgttagcacatcagatcgaggacatcgtggatgactacttgcatcttgttagccacaaggacaaacatgatgacactgtatggactacctatctaaagaaaggattcaagagaatgaagggaccaaatgctctgctctctttaaacaggatagctccgtctgttaaggaagcagaggccaatctagtgcacctgtttcaagcaaaagagcgatgggttcggatggttgccgatgagactagtggtgaaagctcatgttacattgttgaggcgtcacgtcatctagctagcatttcatgctccctcagtgaagaagatcttgtaggggtggatgaaaacagaaaaagactccgcgagtggctggcaggtgatgaattggaacgtgaggtgatagtgctgcatgggatgggaggtctcggcaaaacaaccttggcagcaaatgtgtataggaacgagagagagaagtttgaatgccatgcctgggtctccatctctcaaacatattccatgaagaacattctgaaatgtctgatcactgaacttttcagaaatgccaaacaaaatcctccggtaaaccttggggacatgaaagctgaaggccttcaagatgaattgaaggcattcctaagggaccggaagtatttggtcatattagatgatgtttgggcaccagaagccatcagtaacttgttcggagcacttgtttctaatctcagggggagtagagtacttgtcacaacacgcattgatgaggtaactcaccttgctttcccaaacaagaggattaggctagaacctctatcacaaaacgactcatgggaactcttctataaggcggcttttccaagagagaagaaacttgagtgccccacagaagtaacacagctagcatatcaaatagcaagcaagtgcaaaggtgtacctcttgcaattgtctctgtcggcagactcctctttgtgcgtgacaagactgaagaggaattcaggcgcatacataaccaacttgactgggaggtcatcaacaacccgagcatggaacatgttaggaatatcctttacctgagctacatctaccttccaacacaactaaaaagttgcttcctctattgcagcttgtttccagacgactatctttttacaagaaagaagcttgtaaggtggtggatagcagaagggtttgtagagaagaggggtggaagcacaatggaggaagtggcagaagggtatctcaaggaattggttcacatgaacatgctacagcttgttgaaaggaactcatttggcaggataaaagcattcagaatgcatgatatcgtacacgagttggcagttgatttgtgccggagagaatgttttggtgtttcatacagttgtgagaataagcgtttcgagtttcttgaggagaatgatgaacgatggatggtaatacacagattagacaaggatattaatcaagtaatttcaagtgaatgccgccttcgatctttcatcgcattggataaagccatgccatcatccactctgctacctctgctatccgagaagtgtagatatatgtcagtacttgagttaagcgggctacccatcgacaatgttccagatgccataggtgatctattcaacctccgacatcttggcctgcgggattccaatgtgaagctcctcccaaattctatcgagaagctctccaacttgctaacactggacctctgtacatcggaaatacatgagctgccaagagggatcattaagctaaaaaagcttaggcacttgtttgctgagaaagcgaacgatcggtctgggcgacaactccagtgtcgcactggtgtatgcatccccaggggactagagaatctgagagagctacagacattgcaagcactgcaagctcaggatgagcctttgagctggttgggggagctgaggcagatgagaagcataaagatatgggacgtgaagggaagctgctgcgaatgcctctgcgcgtcattgcgtcacatggaatttctatcctacttaagcattgcagcaagtgatgagaatgatatcctcaatttgagtagtttgaacccactgcctccaaaccttgaaaagctaagattgcgcgggagattggcacaagcaaacatgctgttgggtgcagcagggggtcagaaccacttgtattcgatacatctatcttggtcccagctggtagatgacccactgccatctctgtctcggtggtcgaatctgacggaccttttgttgaacagagcgtacattggagatgagctcgtcttccaccatgggtggtttcctgccctcaaggagctatacataggagacatgcctcgcctgaaacggttggagattcagcaaggttccatggcaagcctgcagcaactatatctagtcaacctcagtagcatgatggaggtcccgcttggcatcgagttcctcatgtcaactctcaaatctttgggcttcgcagagatcacccggcaattcctcgctgcgttgcgccaatgctctagaattaattgcggtatccagtggtggtacacactacttggagaggataggactcaagaggcatcaatatag
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| Protein seq | MSEAVILLIVKKIGVALGNEAINQATSYFQKYVTQLTELQGSMGRIKRELRLMHEFLSRMDIRNRNNKIYEIWVEDVRMLAHQIEDIVDDYLHLVSHKDKHDDTVWTTYLKKGFKRMKGPNALLSLNRIAPSVKEAEANLVHLFQAKERWVRMVADETSGESSCYIVEASRHLASISCSLSEEDLVGVDENRKRLREWLAGDELEREVIVLHGMGGLGKTTLAANVYRNEREKFECHAWVSISQTYSMKNILKCLITELFRNAKQNPPVNLGDMKAEGLQDELKAFLRDRKYLVILDDVWAPEAISNLFGALVSNLRGSRVLVTTRIDEVTHLAFPNKRIRLEPLSQNDSWELFYKAAFPREKKLECPTEVTQLAYQIASKCKGVPLAIVSVGRLLFVRDKTEEEFRRIHNQLDWEVINNPSMEHVRNILYLSYIYLPTQLKSCFLYCSLFPDDYLFTRKKLVRWWIAEGFVEKRGGSTMEEVAEGYLKELVHMNMLQLVERNSFGRIKAFRMHDIVHELAVDLCRRECFGVSYSCENKRFEFLEENDERWMVIHRLDKDINQVISSECRLRSFIALDKAMPSSTLLPLLSEKCRYMSVLELSGLPIDNVPDAIGDLFNLRHLGLRDSNVKLLPNSIEKLSNLLTLDLCTSEIHELPRGIIKLKKLRHLFAEKANDRSGRQLQCRTGVCIPRGLENLRELQTLQALQAQDEPLSWLGELRQMRSIKIWDVKGSCCECLCASLRHMEFLSYLSIAASDENDILNLSSLNPLPPNLEKLRLRGRLAQANMLLGAAGGQNHLYSIHLSWSQLVDDPLPSLSRWSNLTDLLLNRAYIGDELVFHHGWFPALKELYIGDMPRLKRLEIQQGSMASLQQLYLVNLSSMMEVPLGIEFLMSTLKSLGFAEITRQFLAALRQCSRINCGIQWWYTLLGEDRTQEASI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0678400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0678400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017520 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0326600 | RBH | 0.004796 | 0.011663 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0337700 | RBH | 0.003955 | 0.0555 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0072230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023910 | SBH | 0.0 | 0.0 | 0.0 |
