Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0016020 | OGI:04041240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:22805335-22806676 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcccactggggcgaggtcatggctcgccgacttgcgtgtgcggttcggcggcggtgacggcgccagggaggagacggggctcaggatcctggtgttcgaggtggcgacggccatgtcgcggctcgtgtcgctctattgcttgctgtctgacgtggaggtcaggaggctccacgcggacgcgctgcgcgccgagggcgtcgcgcgcgtcacatccacgcatcagtcgctcctgctctggcttgcgtgtggcgatatcgtggcggacctcgaccacgcagccgacaccgctgcgcggttcgggacgcgttgctgcgcggcgcgccgttcctgcacgattttcgaccgcgtctacgccgagctaagcgggggaacggactcgcgcggctggacgcgacggttgggttctacggggccgcggcgaagcagtttaggaagatggagcggcacgtggccgcgacggcgaagctgtacgcggagatggacgcgctcagcgagctggagaaggcagcgagggagggggaggcgacggcgcttgatggggaggagacgccaggacaggcgacggaggcaaggatggaggggattggccgacgaaggagagggatggacgggaatggtgtcgatactaataaattatgaaaataccctacgcaaattattatctcttgaaaaatatacccctccacatttctactaccattaactctagtggtagtaaaactagatctcaatcgtactattaaatataatcaacggcttagattactttttactacaagtagagagcaccggagcagggctcttcctatcaacctcaacgcctctgacaacactttatgtattttttcaaaagctatgatcaggtgttcatttttttcctttcagaatttttatatgttttctgctaatttgagaaacatgccacatggcggcttaattatgagcactttataatgtttaaaagacatttagtatataaaaatagatttaatctaagagaataggcTAtatatatgtataataattggaaaagtttgataataatgctgaggtccaaagggatcatcacgagcggtctgggcagcgacgaggctgtagcaaacctgataaacaagatccgaaccaaaggagcaatattgagcctagacagcagtatacatgacgtgctacgggagataaatgcacattgcaagaagccatggaacaagtggcgagcgacccttatgcataggtacttcagcaacccatgggtattcatctcgctcctggcggcaatcatactgcttctcgcaaccgctatgcagaccatctacaccatcatacccttctacaagaaataa
More
|
||||||||||
| CDS seq | atgcccactggggcgaggtcatggctcgccgacttgcgtgtgcggttcggcggcggtgacggcgccagggaggagacggggctcaggatcctggtgttcgaggtggcgacggccatgtcgcggctcgtgtcgctctattgcttgctgtctgacgtggaggtcaggaggctccacgcggacgcgctgcgcgccgagggcgtcgcgcgcgtcacatccacgcatcagtcgctcctgctctggcttgcgtgtggcgatatcgtggcggacctcgaccacgcagccgacaccgctgcgcggttcgggacgcgttgctgcgcggcgcgccgttcctgcacgattttcgaccgcgtctacgccgagctaagcgggggaacggactcgcgcggctggacgcgacggtccaaagggatcatcacgagcggtctgggcagcgacgaggctgtagcaaacctgataaacaagatccgaaccaaaggagcaatattgagcctagacagcagtatacatgacgtgctacgggagataaatgcacattgcaagaagccatggaacaagtggcgagcgacccttatgcataggtacttcagcaacccatgggtattcatctcgctcctggcggcaatcatactgcttctcgcaaccgctatgcagaccatctacaccatcatacccttctacaagaaataa
More
|
||||||||||
| Protein seq | MPTGARSWLADLRVRFGGGDGAREETGLRILVFEVATAMSRLVSLYCLLSDVEVRRLHADALRAEGVARVTSTHQSLLLWLACGDIVADLDHAADTAARFGTRCCAARRSCTIFDRVYAELSGGTDSRGWTRRSKGIITSGLGSDEAVANLINKIRTKGAILSLDSSIHDVLREINAHCKKPWNKWRATLMHRYFSNPWVFISLLAAIILLLATAMQTIYTIIPFYKK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0016020 | OsLiXu_11g0016020.01 | Chr11 | 22805335 | 22806676 | + | NAM | ||
| CDS seq | atgcccactggggcgaggtcatggctcgccgacttgcgtgtgcggttcggcggcggtgacggcgccagggaggagacggggctcaggatcctggtgttcgaggtggcgacggccatgtcgcggctcgtgtcgctctattgcttgctgtctgacgtggaggtcaggaggctccacgcggacgcgctgcgcgccgagggcgtcgcgcgcgtcacatccacgcatcagtcgctcctgctctggcttgcgtgtggcgatatcgtggcggacctcgaccacgcagccgacaccgctgcgcggttcgggacgcgttgctgcgcggcgcgccgttcctgcacgattttcgaccgcgtctacgccgagctaagcgggggaacggactcgcgcggctggacgcgacggtccaaagggatcatcacgagcggtctgggcagcgacgaggctgtagcaaacctgataaacaagatccgaaccaaaggagcaatattgagcctagacagcagtatacatgacgtgctacgggagataaatgcacattgcaagaagccatggaacaagtggcgagcgacccttatgcataggtacttcagcaacccatgggtattcatctcgctcctggcggcaatcatactgcttctcgcaaccgctatgcagaccatctacaccatcatacccttctacaagaaataa
More
|
|||||||
| Protein seq | MPTGARSWLADLRVRFGGGDGAREETGLRILVFEVATAMSRLVSLYCLLSDVEVRRLHADALRAEGVARVTSTHQSLLLWLACGDIVADLDHAADTAARFGTRCCAARRSCTIFDRVYAELSGGTDSRGWTRRSKGIITSGLGSDEAVANLINKIRTKGAILSLDSSIHDVLREINAHCKKPWNKWRATLMHRYFSNPWVFISLLAAIILLLATAMQTIYTIIPFYKK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0540800 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33950 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0540800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016520 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016440 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015980 | SBH | 0.000000 | 0.102002 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0329500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018050 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0341800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016620 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016010 | SBH | 1.197444 | 0.0 | 0.080057 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016310 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016050 | SBH | 1.215185 | 0.0 | 0.347222 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016490 | SBH | 2.979164 | 0.0 | 2.221103 |
